Genotyping of Acinetobacter baumannii strains isolated at a Japanese hospital over five years using targeted next-generation sequencing

Journal of Infection and Chemotherapy

Volumn 21, Issue 7, 2015, Pages 512-515

  Alshahni, Mohamed Mahdi ^a   Asahara, Miwa ^b   Kawakami, Sayoko ^b   Fujisaki, Ryuichi ^a   Matsunaga, Naohisa ^a,b   Furukawa, Taiji ^a   Teramoto, Tamio ^a   Makimura, Koichi ^a  

^a TEIKYO UNIVERSITY   (Japan)

^b TEIKYO UNIVERSITY HOSPITAL   (Japan)

Author keywords

Acinetobacter baumannii; Bacteria; Carbapenem resistant; Next generation sequencing; Outbreak

Indexed keywords

ACINETOBACTER BAUMANNII; ARTICLE; BACTERIUM ISOLATION; GENOTYPE; JAPAN; MULTILOCUS SEQUENCE TYPING; NEXT GENERATION SEQUENCING; NONHUMAN; PHYLOGENY; RETROSPECTIVE STUDY; UNIVERSITY HOSPITAL; ACINETOBACTER INFECTION; ANTIBIOTIC RESISTANCE; CLASSIFICATION; CROSS INFECTION; DNA SEQUENCE; EPIDEMIC; GENETICS; GENOTYPING TECHNIQUE; HUMAN; MICROBIOLOGY; MOLECULAR TYPING; PROCEDURES;

BACTERIAL DNA;

ACINETOBACTER BAUMANNII; ACINETOBACTER INFECTIONS; CROSS INFECTION; DISEASE OUTBREAKS; DNA, BACTERIAL; DRUG RESISTANCE, BACTERIAL; GENOTYPE; GENOTYPING TECHNIQUES; HUMANS; MOLECULAR TYPING; RETROSPECTIVE STUDIES; SEQUENCE ANALYSIS, DNA; TOKYO;

EID: 84952628494     PISSN: 1341321X     EISSN: 14377780     Source Type: Journal    
DOI: 10.1016/j.jiac.2015.03.009     Document Type: Article

References (10)

1. Peleg A.Y., Seifert H., Paterson D.L. Acinetobacter baumannii: emergence of a successful pathogen. Clin Microbiol Rev 2008, 21:538-582.
2. Lambiase A., Piazza O., Rossano F., Del Pezzo M.A., Tufano R., Catania M.R. Persistence of carbapenem-resistant Acinetobacter baumannii strains in Italian intensive care unit during a forty-six month study period. New Microbiol 2012, 35:199-206.
3. Villalón P., Valdezate S., Medina-Pascual M.J., Rubio V., Vindel A., Saez-Nieto J.A. Clonal diversity of nosocomial epidemic Acinetobacter baumannii strains isolated in Spain. J Clin Microbiol 2011, 49:875-882.
4. Diancourt L., Passet V., Verhoef J., Grimont P.A.D., Brisse S. Multilocus sequence typing of Klebsiella pneumoniae nosocomial isolates. J Clin Microbiol 2005, 43:4178-4182.
5. Arena F., Rolfe A.P., Doran G., Conte V., Gruszka S., Clarke T., et al. Rapid resistome fingerprinting and clonal lineage profiling of carbapenem-resistant Klebsiella pneumoniae isolates by targeted next-generation sequencing. J Clin Microbiol 2014, 52:987-990.
6. Leonard JT, Adesokan A, Bruso S, Clarke IV T, Doran G, Gruszka S, et al. Broad active surveillance enabled by Pathogenica's HAI biodetection kit. (n.d.). Retrieved February 23, 2015, from. http://www.bioinnova.ch/uploads/3/0/5/6/30561055/active_surveillance:2013.pdf.
7. Yuji K., Oiso G., Matsumura T., Murashige N., Kami M. Police investigation into multidrug-resistant Acinetobacter baumannii outbreak in Japan. Clin Infect Dis 2011, 52:422.
8. Bartual S.G., Seifert H., Hippler C., Luzon M.A., Wisplinghoff H., Rodríguez-Valera F. Development of a multilocus sequence typing scheme for characterization of clinical isolates of Acinetobacter baumannii. J Clin Microbiol 2005, 43:4382-4390.
9. Acinetobacter baumannii MLST databases. (n.d.). Retrieved February 23, 2015, from. http://pubmlst.org/abaumannii/.
10. Tamura K., Stecher G., Peterson D., Filipski A., Kumar S. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 2013, 30:2725-2729.