Comparison of glomerular transcriptome profiles of adult-onset steroid sensitive focal segmental glomerulosclerosis and minimal change disease

PLoS ONE

Volumn 10, Issue 11, 2015, Pages

  Tong, Jun ^a   Xie, Jingyuan ^a   Ren, Hong ^a   Liu, Jian ^a   Zhang, Weijia ^b   Wei, Chengguo ^b   Xu, Jing ^a   Zhang, Wen ^a   Li, Xiao ^a   Wang, Weiming ^a   Lv, Danfeng ^c   He, John Cijiang ^a,b   Chen, Nan ^a  

^a SHANGHAI JIAO TONG UNIVERSITY SCHOOL OF MEDICINE   (China)

^b MOUNT SINAI SCHOOL OF MEDICINE   (United States)

^c INSTITUTE OF PLANT PHYSIOLOGY AND ECOLOGY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MARKER; MEMBRANE METALLOENDOPEPTIDASE; TRANSCRIPTOME;

ADULT; ARTICLE; CELL PROLIFERATION; CHINESE; CLINICAL ARTICLE; CONTROLLED STUDY; DOWN REGULATION; FEMALE; FOCAL GLOMERULOSCLEROSIS; GAMETOGENESIS; GENE EXPRESSION; GENE IDENTIFICATION; GENETIC TRANSCRIPTION; GLOMERULUS; HUMAN; HUMAN TISSUE; IMMUNOHISTOCHEMISTRY; INTRACELLULAR TRANSPORT; KIDNEY BIOPSY; KIDNEY DEVELOPMENT; MALE; METABOLIC REGULATION; MICROARRAY ANALYSIS; MINIMAL CHANGE GLOMERULONEPHRITIS; MUSCLE CONTRACTION; MUSCLE DEVELOPMENT; ONSET AGE; OXIDATION; PODOCYTE; PROSPECTIVE STUDY; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN UNFOLDING; REAL TIME POLYMERASE CHAIN REACTION; SPERMATOGENESIS; UPREGULATION; COMPARATIVE STUDY; CYTOLOGY; DIFFERENTIAL DIAGNOSIS; GENE EXPRESSION PROFILING; GENETICS; GLOMERULOSCLEROSIS, FOCAL SEGMENTAL; METABOLISM; NEPHROSIS, LIPOID; PATHOLOGY;

ADULT; BIOMARKERS; DIAGNOSIS, DIFFERENTIAL; FEMALE; GENE EXPRESSION PROFILING; GLOMERULOSCLEROSIS, FOCAL SEGMENTAL; HUMANS; KIDNEY GLOMERULUS; MALE; NEPHROSIS, LIPOID; REAL-TIME POLYMERASE CHAIN REACTION; TRANSCRIPTOME;

EID: 84951079821     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0140453     Document Type: Article

References (36)

1. Xie J, Wu X, Ren H, Wang W, Wang Z, Pan X, et al. COL4A3 mutations cause focal segmental glomerulosclerosis. J Mol Cell Biol. 2014; 6(6):498-505. doi: 10.1093/jmcb/mju040 PMID: 25596306
2. Conlon PJ, Butterly D, Albers F, Rodby R, Gunnells JC, Howell DN. Clinical and pathologic features of familial focal segmental glomerulosclerosis. Am J Kidney Dis. 1995; 26(1):34-40. PMID: 7611265
3. Mak SK, Short CD, Mallick NP. Long-term outcome of adult-onset minimal-change nephropathy. Nephrol Dial Transplant. 1996; 11(11):2192-201. PMID: 8941578
4. Rood IM, Deegens JK, Wetzels JF. Genetic causes of focal segmental glomerulosclerosis: implications for clinical practice. Nephrol Dial Transplant. 2012; 27(3):882-90. doi: 10.1093/ndt/gfr771 PMID: 22334613
5. Baelde HJ, Eikmans M, Doran PP, Lappin DW, de Heer E, Bruijn JA. Gene expression profiling in glomeruli from human kidneys with diabetic nephropathy. Am J Kidney Dis. 2004; 43(4):636-50. PMID: 15042541
6. Peterson KS, Huang JF, Zhu J, D'Agati V, Liu X, Miller N, et al. Characterization of heterogeneity in the molecular pathogenesis of lupus nephritis from transcriptional profiles of laser-captured glomeruli. J Clin Invest. 2004; 113(12):1722-33. PMID: 15199407
7. Wu Y, Liu Z, Xiang Z, Zeng C, Chen Z, Ma X, et al. Obesity-related glomerulopathy: insights from gene expression profiles of the glomeruli derived from renal biopsy samples. Endocrinology. 2006; 147 (1):44-50. PMID: 16210374
8. Schwab K, Witte DP, Aronow BJ, Devarajan P, Potter SS, Patterson LT. Microarray analysis of focal segmental glomerulosclerosis. Am J Nephrol. 2004; 24(4):438-47. PMID: 15308877
9. Hodgin JB, Borczuk AC, Nasr SH, Markowitz GS, Nair V, Martini S, et al. A molecular profile of focal segmental glomerulosclerosis from formalin-fixed, paraffin-embedded tissue. Am J Pathol. 2010; 177 (4):1674-86. doi: 10.2353/ajpath.2010.090746 PMID: 20847290
10. Chen LI, Guh JY, Wu KD, Chen YM, Kuo MC, Hwang SJ, et al. Modification of diet in renal disease (MDRD) study and CKD epidemiology collaboration (CKD-EPI) equations for Taiwanese adults. PLoS One. 2014; 9(6):e99645. doi: 10.1371/journal.pone.0099645 PMID: 24927124
11. Working Group of the International Ig ANN, the Renal Pathology S, Cattran DC, Coppo R, Cook HT, Feehally J, et al. The Oxford classification of IgA nephropathy: rationale, clinicopathological correlations, and classification. Kidney Int. 2009; 76(5):534-45. doi: 10.1038/ki.2009.243 PMID: 19571791
12. Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics. 2003; 19(2):185-93. PMID: 12538238
13. Yoshida R, Imoto S, Higuchi T. Estimating time-dependent gene networks from time series microarray data by dynamic linear models with Markov switching. Proc IEEE Comput Syst Bioinform Conf. 2005:289-98. PMID: 16447986
14. Chen EY, Tan CM, Kou Y, Duan Q, Wang Z, Meirelles GV, et al. Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool. BMC Bioinformatics. 2013; 14:128. doi: 10.1186/1471-2105-14-128 PMID: 23586463
15. Pfaffl MW. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 2001; 29(9):e45. PMID: 11328886
16. Fan Y, Wei C, Xiao W, Zhang W, Wang N, Chuang PY, et al. Temporal Profile of the Renal Transcriptome of HIV-1 Transgenic Mice during Disease Progression. PLoS One. 2014; 9(3):e93019. doi: 10.1371/journal.pone.0093019 PMID: 24667548
17. Schmid H, Henger A, Cohen CD, Frach K, Grone HJ, Schlondorff D, et al. Gene expression profiles of podocyte-associated molecules as diagnostic markers in acquired proteinuric diseases. J Am Soc Nephrol. 2003; 14(11):2958-66. PMID: 14569107
18. Zhang D, Gu T, Forsberg E, Efendic S, Brismar K, Gu HF. Genetic and functional effects of membrane metalloendopeptidase on diabetic nephropathy development. Am J Nephrol. 2011; 34(5):483-90. doi: 10.1159/000333006 PMID: 22024547
19. Bennett MR, Czech KA, Arend LJ, Witte DP, Devarajan P, Potter SS. Laser capture microdissectionmicroarray analysis of focal segmental glomerulosclerosis glomeruli. Nephron Exp Nephrol. 2007; 107 (1):e30-40. PMID: 17684420
20. Luo H, Sawashita J, Tian G, Liu Y, Li L, Ding X, et al. Extracellular deposition of mouse senile AApoAII amyloid fibrils induced different unfolded protein responses in the liver, kidney, and heart. Lab Invest. 2015; 95(3):320-33. doi: 10.1038/labinvest.2014.158 PMID: 25545477
21. Xie J, Hao X, Azeloglu EU, Ren H, Wang Z, Ma J, et al. Novel mutations in the inverted formin 2 gene of Chinese families contribute to focal segmental glomerulosclerosis. Kidney Int. 2015; 88(3):593-604. doi: 10.1038/ki.2015.106 PMID: 26039629
22. Noordmans GA, Caputo CR, Huang Y, Sheehan SM, Bulthuis M, Heeringa P, et al. Genetic analysis of mesangial matrix expansion in aging mice and identification of Far2 as a candidate gene. J Am Soc Nephrol. 2013; 24(12):1995-2001. doi: 10.1681/ASN.2012080838 PMID: 24009241
23. Pereira NL, Aksoy P, Moon I, Peng Y, Redfield MM, Burnett JC Jr., et al. Natriuretic peptide pharmacogenetics: membrane metallo-endopeptidase (MME): common gene sequence variation, functional characterization and degradation. J Mol Cell Cardiol. 2010; 49(5):864-74. doi: 10.1016/j.yjmcc.2010.07.020 PMID: 20692264
24. Cohen CD, Lindenmeyer MT, Eichinger F, Hahn A, Seifert M, Moll AG, et al. Improved elucidation of biological processes linked to diabetic nephropathy by single probe-based microarray data analysis. PLoS One. 2008; 3(8):e2937. doi: 10.1371/journal.pone.0002937 PMID: 18698414
25. Muangman P, Spenny ML, Tamura RN, Gibran NS. Fatty acids and glucose increase neutral endopeptidase activity in human microvascular endothelial cells. Shock. 2003; 19(6):508-12. PMID: 12785004
26. Maric C, Zheng W, Walther T. Interactions between angiotensin ll and atrial natriuretic peptide in renomedullary interstitial cells: the role of neutral endopeptidase. Nephron Physiol. 2006; 103(3):p149-56. PMID: 16582578
27. Debiec H, Nauta J, Coulet F, van der Burg M, Guigonis V, Schurmans T, et al. Role of truncating mutations in MME gene in fetomaternal alloimmunisation and antenatal glomerulopathies. Lancet. 2004; 364(9441):1252-9. PMID: 15464186
28. Ronco P, Debiec H, Guigonis V. Mechanisms of disease: Alloimmunization in renal diseases. Nat Clin Pract Nephrol. 2006; 2(7):388-97. PMID: 16932467
29. Kiss T, Fayet-Lebaron E, Jady BE. Box H/ACA small ribonucleoproteins. Mol Cell. 2010; 37(5):597-606. doi: 10.1016/j.molcel.2010.01.032 PMID: 20227365
30. Valach M, Burger G, Gray MW, Lang BF. Widespread occurrence of organelle genome-encoded 5S rRNAs including permuted molecules. Nucleic Acids Res. 2014; 42(22):13764-77. doi: 10.1093/nar/gku1266 PMID: 25429974
31. Bozaykut P, Sozen E, Kaga E, Ece A, Ozaltin E, Ek B, et al. The role of heat stress on the age related protein carbonylation. J Proteomics. 2013; 89:238-54. doi: 10.1016/j.jprot.2013.06.025 PMID: 23811050
32. Liu L, Dunn ST, Christakos S, Hanson-Painton O, Bourdeau JE. Calbindin-D28k gene expression in the developing mouse kidney. Kidney Int. 1993; 44(2):322-30. PMID: 8377376
33. Suvakov S, Damjanovic T, Stefanovic A, Pekmezovic T, Savic-Radojevic A, Pljesa-Ercegovac M, et al. Glutathione S-transferase A1, M1, P1 and T1 null or low-activity genotypes are associated with enhanced oxidative damage among haemodialysis patients. Nephrol Dial Transplant. 2013; 28 (1):202-12. doi: 10.1093/ndt/gfs369 PMID: 23034843
34. Li X, Tao H, Xie K, Ni Z, Yan Y, Wei K, et al. cAMP signaling prevents podocyte apoptosis via activation of protein kinase A and mitochondrial fusion. PLoS One. 2014; 9(3):e92003. doi: 10.1371/journal.pone. 0092003 PMID: 24642777
35. Miyoshi K, Akazawa Y, Horiguchi T, Noma T. Localization of adenylate kinase 4 in mouse tissues. Acta Histochem Cytochem. 2009; 42(2):55-64. doi: 10.1267/ahc.08012 PMID: 19492028
36. Liu J, Gao X, Zhai Y, Shen Q, Sun L, Feng C, et al. A novel role of angiopoietin-like-3 associated with podocyte injury. Pediatr Res. 2015.