ASSIsT: An automatic SNP scoring tool for in- and outbreeding species

Bioinformatics

Volumn 31, Issue 23, 2015, Pages 3873-3874

  Di Guardo, Mario ^a,b   Micheletti, Diego ^b,c   Bianco, Luca ^b   Koehorst Van Putten, Herma J J ^a   Longhi, Sara ^a   Costa, Fabrizio ^b   Aranzana, Maria J ^c   Velasco, Riccardo ^b   Arús, Pere ^c   Troggio, Michela ^b   Van De Weg, Eric W ^a  

^a WAGENINGEN UNIVERSITY   (Netherlands)

^b RESEARCH AND INNOVATION CENTRE   (Italy)

^c CSIC   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

ALLELE; ANIMAL; GENOTYPING TECHNIQUE; HUMAN; PROCEDURES; SINGLE NUCLEOTIDE POLYMORPHISM; SOFTWARE;

ALLELES; ANIMALS; GENOTYPING TECHNIQUES; HUMANS; POLYMORPHISM, SINGLE NUCLEOTIDE; SOFTWARE;

EID: 84950286847     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btv446     Document Type: Article

References (6)

1. Bassil, N.V. et al. (2015). Development and preliminary evaluation of a 90K Axiom® SNP array in the allo-octoploid cultivated strawberry Fragaria × ananassa. BMC Genomics, 16, 155.
2. Bianco, L. et al. (2014). Development and validation of a 20K single nucleotide polymorphism (SNP) whole genome genotyping array for apple (Malus × domestica Borkh). PLoS One, 9, e110377.
3. Gardner, K.M. et al. (2014). Fast and cost-effective genetic mapping in apple using next-generation sequencing. G3, 4, 1681-1687.
4. Kermani, B.G. (2006). Artificial intelligence and global normalization methods for genotyping. US Patent 20 060 22-529.
5. Pikunova, A. et al. (2014). 'Schmidt's Antonovka' is identical to 'Common Antonovka', an apple cultivar widely used in Russia in the breeding for biotic and abiotic stresses. Tree Genet. Genom., 10, 261-271.
6. Troggio, M. et al. (2013). Evaluation of SNP data from the Malus infinium array identifies challenges for genetic analysis of complex genomes of polyploid origin. PLoS One, 8, e67407.