메뉴 건너뛰기




Volumn 31, Issue 23, 2015, Pages 3790-3798

PBAP: A pipeline for file processing and quality control of pedigree data with dense genetic markers

Author keywords

[No Author keywords available]

Indexed keywords

GENETIC MARKER;

EID: 84950256350     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btv444     Document Type: Article
Times cited : (5)

References (73)
  • 1
    • 0036338150 scopus 로고    scopus 로고
    • Merlin-rapid analysis of dense genetic maps using sparse gene flow trees
    • Abecasis, G.R. et al. (2002) Merlin-rapid analysis of dense genetic maps using sparse gene flow trees. Nat. Genet., 30, 97-101.
    • (2002) Nat. Genet. , vol.30 , pp. 97-101
    • Abecasis, G.R.1
  • 2
    • 77957150381 scopus 로고    scopus 로고
    • Genome-wide linkage in Utah autism pedigrees
    • Allen-Brady, K. et al. (2010) Genome-wide linkage in Utah autism pedigrees. Mol. Psychiatry, 15, 1006-1015.
    • (2010) Mol. Psychiatry , vol.15 , pp. 1006-1015
    • Allen-Brady, K.1
  • 3
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from populationscale sequencing
    • Altshuler, D. et al. (2010) A map of human genome variation from populationscale sequencing. Nature, 467, 1061-1073.
    • (2010) Nature , vol.467 , pp. 1061-1073
    • Altshuler, D.1
  • 4
    • 34548569318 scopus 로고    scopus 로고
    • A maximum-likelihood method for the estimation of pairwise relatedness in structured populations
    • Anderson, A.D. and Weir, B.S. (2007) A maximum-likelihood method for the estimation of pairwise relatedness in structured populations. Genetics, 176, 421-440.
    • (2007) Genetics , vol.176 , pp. 421-440
    • Anderson, A.D.1    Weir, B.S.2
  • 5
    • 67650739409 scopus 로고    scopus 로고
    • Generating linkage mapping files from Affymetrix SNP chip data
    • Bahlo, M. and Bromhead, C.J. (2009) Generating linkage mapping files from Affymetrix SNP chip data. Bioinformatics, 25, 1961-1962.
    • (2009) Bioinformatics , vol.25 , pp. 1961-1962
    • Bahlo, M.1    Bromhead, C.J.2
  • 6
    • 64149094545 scopus 로고    scopus 로고
    • Linkage analysis with dense SNP maps in isolated populations
    • Bellenguez, C. et al. (2009) Linkage analysis with dense SNP maps in isolated populations. Hum. Hered., 68, 87-97.
    • (2009) Hum. Hered. , vol.68 , pp. 87-97
    • Bellenguez, C.1
  • 7
    • 62649155943 scopus 로고    scopus 로고
    • A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals
    • Browning, B.L. and Browning, S.R. (2009) A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals. Am. J. Hum. Genet., 84, 210-223.
    • (2009) Am. J. Hum. Genet. , vol.84 , pp. 210-223
    • Browning, B.L.1    Browning, S.R.2
  • 8
    • 77956352770 scopus 로고    scopus 로고
    • Genome-wide linkage analyses of two repetitive behavior phenotypes in Utah pedigrees with autism spectrum disorders
    • Cannon, D.S. et al. (2010) Genome-wide linkage analyses of two repetitive behavior phenotypes in Utah pedigrees with autism spectrum disorders. Mol. Autism, 1, 3.
    • (2010) Mol. Autism , vol.1 , pp. 3
    • Cannon, D.S.1
  • 9
    • 84872380261 scopus 로고    scopus 로고
    • Sequence kernel association test for quantitative traits in family samples
    • Chen, H. et al. (2013) Sequence kernel association test for quantitative traits in family samples. Genet. Epidemiol., 37, 196-204.
    • (2013) Genet. Epidemiol. , vol.37 , pp. 196-204
    • Chen, H.1
  • 10
    • 84875922091 scopus 로고    scopus 로고
    • GIGI: An approach to effective imputation of dense genotypes on large pedigrees
    • Cheung, C.Y.K. et al. (2013) GIGI: an approach to effective imputation of dense genotypes on large pedigrees. Am. J. Hum. Genet., 92, 504-516.
    • (2013) Am. J. Hum. Genet. , vol.92 , pp. 504-516
    • Cheung, C.Y.K.1
  • 11
    • 84899045235 scopus 로고    scopus 로고
    • Detection of Mendelian consistent genotyping errors in pedigrees
    • Cheung, C.Y.K. et al. (2014) Detection of Mendelian consistent genotyping errors in pedigrees. Genet. Epidemiol., 38, 291-299.
    • (2014) Genet. Epidemiol. , vol.38 , pp. 291-299
    • Cheung, C.Y.K.1
  • 12
    • 71249117865 scopus 로고    scopus 로고
    • Case-control association testing in the presence of unknown relationships
    • Choi, Y. et al. (2009) Case-control association testing in the presence of unknown relationships. Genet. Epidemiol., 35, 668-678.
    • (2009) Genet. Epidemiol. , vol.35 , pp. 668-678
    • Choi, Y.1
  • 13
    • 77956390384 scopus 로고    scopus 로고
    • Genome-wide linkage using the Social Responsiveness Scale in Utah autism pedigrees
    • Coon, H. et al. (2010) Genome-wide linkage using the Social Responsiveness Scale in Utah autism pedigrees. Mol Autism, 1, 8.
    • (2010) Mol Autism , vol.1 , pp. 8
    • Coon, H.1
  • 14
    • 0027366195 scopus 로고
    • Faster sequential genetic-linkage computations
    • Cottingham, R.W. et al. (1993) Faster sequential genetic-linkage computations. Am. J. Hum. Genet., 53, 252-263.
    • (1993) Am. J. Hum. Genet. , vol.53 , pp. 252-263
    • Cottingham, R.W.1
  • 15
    • 0033759689 scopus 로고    scopus 로고
    • Improved inference of relationship for pairs of individuals
    • Epstein, M.P. et al. (2000) Improved inference of relationship for pairs of individuals. Am. J. Hum. Genet., 67, 1219-1231.
    • (2000) Am. J. Hum. Genet. , vol.67 , pp. 1219-1231
    • Epstein, M.P.1
  • 16
    • 84861929664 scopus 로고    scopus 로고
    • IPGWAS: An integrated pipeline for rational quality control and association analysis of genome-wide genetic studies
    • Fan, Y.H. and Song, Y.Q. (2012) IPGWAS: an integrated pipeline for rational quality control and association analysis of genome-wide genetic studies. Biochem. Biophys. Res. Commun., 422, 363-368.
    • (2012) Biochem. Biophys. Res. Commun. , vol.422 , pp. 363-368
    • Fan, Y.H.1    Song, Y.Q.2
  • 17
    • 35348983887 scopus 로고    scopus 로고
    • A second generation human haplotype map of over 3.1 million SNPs
    • Frazer, K.A. et al. (2007) A second generation human haplotype map of over 3.1 million SNPs. Nature, 449, 851-856.
    • (2007) Nature , vol.449 , pp. 851-856
    • Frazer, K.A.1
  • 18
    • 77956197018 scopus 로고    scopus 로고
    • Utilizing genotype imputation for the augmentation of sequence data
    • Fridley, B.L. et al. (2010) Utilizing genotype imputation for the augmentation of sequence data. PLoS One, 5, e11018.
    • (2010) PLoS One , vol.5 , pp. e11018
    • Fridley, B.L.1
  • 19
    • 84856587415 scopus 로고    scopus 로고
    • GWAtoolbox: An R package for fast quality control and handling of genome-wide association studies meta-analysis data
    • Fuchsberger, C. et al. (2012) GWAtoolbox: an R package for fast quality control and handling of genome-wide association studies meta-analysis data. Bioinformatics, 28, 444-445.
    • (2012) Bioinformatics , vol.28 , pp. 444-445
    • Fuchsberger, C.1
  • 20
    • 84870844464 scopus 로고    scopus 로고
    • GWASTools: An R/Bioconductor package for quality control and analysis of genome-wide association studies
    • Gogarten, S.M. et al. (2012) GWASTools: an R/Bioconductor package for quality control and analysis of genome-wide association studies. Bioinformatics, 28, 3329-3331.
    • (2012) Bioinformatics , vol.28 , pp. 3329-3331
    • Gogarten, S.M.1
  • 21
    • 0034098774 scopus 로고    scopus 로고
    • Allegro, a new computer program for multipoint linkage analysis
    • Gudbjartsson, D.F. et al. (2000) Allegro, a new computer program for multipoint linkage analysis. Nat. Genet., 25, 12-13.
    • (2000) Nat. Genet. , vol.25 , pp. 12-13
    • Gudbjartsson, D.F.1
  • 22
    • 0030833349 scopus 로고    scopus 로고
    • Markov chain Monte Carlo segregation and linkage analysis for oligogenic models
    • Heath, S.C. (1997) Markov chain Monte Carlo segregation and linkage analysis for oligogenic models. Am. J. Hum. Genet., 61, 748-760.
    • (1997) Am. J. Hum. Genet. , vol.61 , pp. 748-760
    • Heath, S.C.1
  • 23
    • 82455175493 scopus 로고    scopus 로고
    • Incorporating linkage information into a common disease/rare variant framework
    • Hinrichs, A.L. and Suarez, B.K. (2011) Incorporating linkage information into a common disease/rare variant framework. Genet. Epidemiol., 35, S74-S79.
    • (2011) Genet. Epidemiol. , vol.35 , pp. S74-S79
    • Hinrichs, A.L.1    Suarez, B.K.2
  • 24
    • 8844250042 scopus 로고    scopus 로고
    • Ignoring linkage disequilibrium among tightly linked markers induces false-positive evidence of linkage for affected sib pair analysis
    • Huang, Q.Q. et al. (2004) Ignoring linkage disequilibrium among tightly linked markers induces false-positive evidence of linkage for affected sib pair analysis. Am. J. Hum. Genet., 75, 1106-1112.
    • (2004) Am. J. Hum. Genet. , vol.75 , pp. 1106-1112
    • Huang, Q.Q.1
  • 25
    • 77950301214 scopus 로고    scopus 로고
    • Variance component model to account for sample structure in genome-wide association studies
    • Kang, H.M. et al. (2010) Variance component model to account for sample structure in genome-wide association studies. Nat. Genet., 42, 348-U110.
    • (2010) Nat. Genet. , vol.42 , pp. U110-348
    • Kang, H.M.1
  • 26
    • 0019415412 scopus 로고
    • A recursive algorithm for the calculation of identity coefficients
    • Karigl, G. (1981) A recursive algorithm for the calculation of identity coefficients. Ann. Hum. Genet., 45, 299-305.
    • (1981) Ann. Hum. Genet. , vol.45 , pp. 299-305
    • Karigl, G.1
  • 27
    • 84900328675 scopus 로고    scopus 로고
    • A form of the metabolic syndrome associated with mutations in DYRK1B
    • Keramati, A.R. et al. (2014) A form of the metabolic syndrome associated with mutations in DYRK1B. N. Engl. J. Med., 370, 1909-1919.
    • (2014) N. Engl. J. Med. , vol.370 , pp. 1909-1919
    • Keramati, A.R.1
  • 28
    • 84881151806 scopus 로고    scopus 로고
    • Efficient identification of equivalences in dynamic graphs and pedigree structures
    • Koepke, H. and Thompson, E. (2013) Efficient identification of equivalences in dynamic graphs and pedigree structures. J. Comput. Biol., 20, 551-570.
    • (2013) J. Comput. Biol. , vol.20 , pp. 551-570
    • Koepke, H.1    Thompson, E.2
  • 29
    • 0029886532 scopus 로고    scopus 로고
    • Parametric and nonparametric linkage analysis: A unified multipoint approach
    • Kruglyak, L. et al. (1996) Parametric and nonparametric linkage analysis: a unified multipoint approach. Am. J. Hum. Genet., 58, 1347-1363.
    • (1996) Am. J. Hum. Genet. , vol.58 , pp. 1347-1363
    • Kruglyak, L.1
  • 30
    • 84896320699 scopus 로고    scopus 로고
    • Single nucleotide polymorphism genotyping using BeadChip microarrays
    • Chapter 2, Unit 2-9
    • Lambert, G. et al. (2013) Single nucleotide polymorphism genotyping using BeadChip microarrays. Curr. Protoc. Hum. Genet., Chapter 2, Unit 2-9.
    • (2013) Curr. Protoc. Hum. Genet.
    • Lambert, G.1
  • 31
    • 0000803318 scopus 로고
    • Construction of multilocus genetic maps in humans
    • Lander, E.S. and Green, P.J. (1987) Construction of multilocus genetic maps in humans. Proc. Natl. Acad. Sci. USA, 84, 2363-2367.
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 2363-2367
    • Lander, E.S.1    Green, P.J.2
  • 32
    • 0026329112 scopus 로고
    • A random walk method for computing genetic location scores
    • Lange, K. and Sobel, E. (1991) A random walk method for computing genetic location scores. Am. J. Hum. Genet., 49, 1320-1334.
    • (1991) Am. J. Hum. Genet. , vol.49 , pp. 1320-1334
    • Lange, K.1    Sobel, E.2
  • 33
    • 0342499587 scopus 로고
    • Strategies for multilocus linkage analysis in humans
    • Lathrop, G.M. et al. (1984) Strategies for multilocus linkage analysis in humans. Proc. Natl. Acad. Sci. USA, 81, 3443-3446.
    • (1984) Proc. Natl. Acad. Sci. USA , vol.81 , pp. 3443-3446
    • Lathrop, G.M.1
  • 34
    • 77956242566 scopus 로고    scopus 로고
    • Quality control and quality assurance in genotypic data for genome-wide association studies
    • Laurie, C.C. et al. (2010) Quality control and quality assurance in genotypic data for genome-wide association studies. Genet. Epidemiol., 34, 591-602.
    • (2010) Genet. Epidemiol. , vol.34 , pp. 591-602
    • Laurie, C.C.1
  • 35
    • 84876459502 scopus 로고    scopus 로고
    • Identification of rare variants from exome sequence in a large pedigree with autism
    • Marchani, E.E. et al. (2012) Identification of rare variants from exome sequence in a large pedigree with autism. Hum. Hered., 74, 153-164.
    • (2012) Hum. Hered. , vol.74 , pp. 153-164
    • Marchani, E.E.1
  • 36
    • 34347344976 scopus 로고    scopus 로고
    • A new multipoint method for genome-wide association studies by imputation of genotypes
    • Marchini, J. et al. (2007) A new multipoint method for genome-wide association studies by imputation of genotypes. Nat. Genet., 39, 906-913.
    • (2007) Nat. Genet. , vol.39 , pp. 906-913
    • Marchini, J.1
  • 37
    • 52949096084 scopus 로고    scopus 로고
    • Next-generation DNA sequencing methods
    • Mardis, E.R. (2008) Next-generation DNA sequencing methods. Annu. Rev. Genomics Hum. Genet., 9, 387-402.
    • (2008) Annu. Rev. Genomics Hum. Genet. , vol.9 , pp. 387-402
    • Mardis, E.R.1
  • 38
    • 79951475133 scopus 로고    scopus 로고
    • A decade's perspective on DNA sequencing technology
    • Mardis, E.R. (2011) A decade's perspective on DNA sequencing technology. Nature, 470, 198-203.
    • (2011) Nature , vol.470 , pp. 198-203
    • Mardis, E.R.1
  • 39
    • 38849084666 scopus 로고    scopus 로고
    • A second-generation combined linkage-physical map of the human genome
    • Matise, T.C. et al. (2007) A second-generation combined linkage-physical map of the human genome. Genome Res., 17, 1783-1786.
    • (2007) Genome Res. , vol.17 , pp. 1783-1786
    • Matise, T.C.1
  • 40
    • 80053206058 scopus 로고    scopus 로고
    • The next PAGE in understanding complex traits: Design for the analysis of population architecture using genetics and epidemiology (PAGE) study
    • Matise, T.C. et al. (2011) The next PAGE in understanding complex traits: design for the analysis of population architecture using genetics and epidemiology (PAGE) study. Am. J. Epidemiol., 174, 849-859.
    • (2011) Am. J. Epidemiol. , vol.174 , pp. 849-859
    • Matise, T.C.1
  • 41
    • 0033912689 scopus 로고    scopus 로고
    • Statistical tests for detection of misspecified relationships by use of genome-screen data
    • McPeek, M.S. and Sun, L. (2000) Statistical tests for detection of misspecified relationships by use of genome-screen data. Am. J. Hum. Genet., 66, 1076-1094.
    • (2000) Am. J. Hum. Genet. , vol.66 , pp. 1076-1094
    • McPeek, M.S.1    Sun, L.2
  • 42
    • 72849144434 scopus 로고    scopus 로고
    • Sequencing technologies-The next generation
    • Metzker, M.L. (2010) Sequencing technologies-The next generation. Nat. Rev. Genet., 11, 31-46.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 31-46
    • Metzker, M.L.1
  • 43
    • 0037357345 scopus 로고    scopus 로고
    • Maximum-likelihood estimation of relatedness
    • Milligan, B.G. (2003) Maximum-likelihood estimation of relatedness. Genetics, 163, 1153-1167.
    • (2003) Genetics , vol.163 , pp. 1153-1167
    • Milligan, B.G.1
  • 44
    • 19544389523 scopus 로고    scopus 로고
    • Mega2: Data-handling for facilitating genetic linkage and association analyses
    • Mukhopadhyay, N. et al. (2005) Mega2: data-handling for facilitating genetic linkage and association analyses. Bioinformatics, 21, 2556-2557.
    • (2005) Bioinformatics , vol.21 , pp. 2556-2557
    • Mukhopadhyay, N.1
  • 45
    • 78649755576 scopus 로고    scopus 로고
    • Exome sequencing, ANGPTL3 mutations, and familial combined hypolipidemia
    • Musunuru, K. et al. (2010) Exome sequencing, ANGPTL3 mutations, and familial combined hypolipidemia. N. Engl. J. Med., 363, 2220-2227.
    • (2010) N. Engl. J. Med. , vol.363 , pp. 2220-2227
    • Musunuru, K.1
  • 46
    • 0032231941 scopus 로고    scopus 로고
    • PedCheck: A program for identification of genotype incompatibilities in linkage analysis
    • O'Connell, J.R. and Weeks, D.E. (1998) PedCheck: a program for identification of genotype incompatibilities in linkage analysis. Am. J. Hum. Genet., 63, 259-266.
    • (1998) Am. J. Hum. Genet. , vol.63 , pp. 259-266
    • O'Connell, J.R.1    Weeks, D.E.2
  • 47
    • 84856468953 scopus 로고    scopus 로고
    • NGS QC toolkit: A toolkit for quality control of next generation sequencing data
    • Patel, R.K. and Jain, M. (2012) NGS QC toolkit: a toolkit for quality control of next generation sequencing data. PLoS One, 7, e30619.
    • (2012) PLoS One , vol.7 , pp. e30619
    • Patel, R.K.1    Jain, M.2
  • 48
    • 77954531945 scopus 로고    scopus 로고
    • A quality control algorithm for filtering SNPs in genome-wide association studies
    • Pongpanich, M. et al. (2010) A quality control algorithm for filtering SNPs in genome-wide association studies. Bioinformatics, 26, 1731-1737.
    • (2010) Bioinformatics , vol.26 , pp. 1731-1737
    • Pongpanich, M.1
  • 49
    • 34548292504 scopus 로고    scopus 로고
    • PLINK: A tool set for whole-genome association and population-based linkage analyses
    • Purcell, S. et al. (2007) PLINK: a tool set for whole-genome association and population-based linkage analyses. Am. J. Hum. Genet., 81, 559-575.
    • (2007) Am. J. Hum. Genet. , vol.81 , pp. 559-575
    • Purcell, S.1
  • 50
    • 70350220595 scopus 로고    scopus 로고
    • Genotyping technologies for genetic research
    • Ragoussis, J. (2009) Genotyping technologies for genetic research. Annu. Rev. Genomics Hum. Genet., 10, 117-133.
    • (2009) Annu. Rev. Genomics Hum. Genet. , vol.10 , pp. 117-133
    • Ragoussis, J.1
  • 51
    • 85023610457 scopus 로고    scopus 로고
    • Quality control pipeline for genome-wide association studies in the eMERGE network: Comparing single site QC to a merged QC approach
    • Ritchie, M. et al. (2010) Quality control pipeline for genome-wide association studies in the eMERGE network: comparing single site QC to a merged QC approach. Genet. Epidemiol., 34, 957-957.
    • (2010) Genet. Epidemiol. , vol.34 , pp. 957-957
    • Ritchie, M.1
  • 52
    • 80053202844 scopus 로고    scopus 로고
    • Linkage and association of phospholipid transfer protein activity to LASS4
    • Rosenthal, E.A. et al. (2011) Linkage and association of phospholipid transfer protein activity to LASS4. J. Lipid Res., 52, 1837-1846.
    • (2011) J. Lipid Res. , vol.52 , pp. 1837-1846
    • Rosenthal, E.A.1
  • 53
    • 84890160000 scopus 로고    scopus 로고
    • Power of family-based association designs to detect rare variants in large pedigrees using imputed genotypes
    • Saad, M. and Wijsman, E.M. (2014) Power of family-based association designs to detect rare variants in large pedigrees using imputed genotypes. Genet. Epidemiol., 38, 1-9.
    • (2014) Genet. Epidemiol. , vol.38 , pp. 1-9
    • Saad, M.1    Wijsman, E.M.2
  • 54
    • 84902926519 scopus 로고    scopus 로고
    • SNP-based linkage analysis in extended pedigrees: Comparison between two alternative approaches
    • Saint-Pierre, A. et al. (2014) SNP-based linkage analysis in extended pedigrees: comparison between two alternative approaches. Hum. Hered., 78, 27-37.
    • (2014) Hum. Hered. , vol.78 , pp. 27-37
    • Saint-Pierre, A.1
  • 55
    • 84905675495 scopus 로고    scopus 로고
    • Challenges of linkage analysis in the era of whole-genome sequencing
    • Santorico, S.A. and Edwards, K.L. (2014) Challenges of linkage analysis in the era of whole-genome sequencing. Genet. Epidemiol., 38, S92-S96.
    • (2014) Genet. Epidemiol. , vol.38 , pp. S92-S96
    • Santorico, S.A.1    Edwards, K.L.2
  • 56
    • 78650868150 scopus 로고    scopus 로고
    • A window into third-generation sequencing
    • Schadt, E.E. et al. (2010) A window into third-generation sequencing. Hum. Mol. Genet., 19, R227-R240.
    • (2010) Hum. Mol. Genet. , vol.19 , pp. R227-R240
    • Schadt, E.E.1
  • 57
    • 0036782136 scopus 로고    scopus 로고
    • Caution on pedigree haplotype inference with software that assumes linkage equilibrium
    • Schaid, D.J. et al. (2002) Caution on pedigree haplotype inference with software that assumes linkage equilibrium. Am. J. Hum. Genet., 71, 992-995.
    • (2002) Am. J. Hum. Genet. , vol.71 , pp. 992-995
    • Schaid, D.J.1
  • 58
    • 53649106195 scopus 로고    scopus 로고
    • Next-generation DNA sequencing
    • Shendure, J. and Ji, H.L. (2008) Next-generation DNA sequencing. Nat. Biotechnol., 26, 1135-1145.
    • (2008) Nat. Biotechnol. , vol.26 , pp. 1135-1145
    • Shendure, J.1    Ji, H.L.2
  • 59
    • 30344457465 scopus 로고    scopus 로고
    • Comparison of marker types and map assumptions using Markov chain Monte Carlo-based analysis of COGA data
    • Sieh, W. et al. (2005) Comparison of marker types and map assumptions using Markov chain Monte Carlo-based analysis of COGA data. BMC Genet., 6(Suppl. 1), S-11.
    • (2005) BMC Genet. , vol.6 , pp. S-11
    • Sieh, W.1
  • 60
    • 84872561782 scopus 로고    scopus 로고
    • A system for exact and approximate genetic linkage analysis of SNP data in large pedigrees
    • Silberstein, M. et al. (2013) A system for exact and approximate genetic linkage analysis of SNP data in large pedigrees. Bioinformatics, 29, 197-205.
    • (2013) Bioinformatics , vol.29 , pp. 197-205
    • Silberstein, M.1
  • 61
    • 0029945706 scopus 로고    scopus 로고
    • Descent graphs in pedigree analysis: Applications to haplotyping, location scores, and marker-sharing statistics
    • Sobel, E. and Lange, K. (1996) Descent graphs in pedigree analysis: applications to haplotyping, location scores, and marker-sharing statistics. Am. J. Hum. Genet., 58, 1323-1337.
    • (1996) Am. J. Hum. Genet. , vol.58 , pp. 1323-1337
    • Sobel, E.1    Lange, K.2
  • 62
    • 0036948344 scopus 로고    scopus 로고
    • Enhanced pedigree error detection
    • Sun, L. et al. (2002) Enhanced pedigree error detection. Hum. Hered., 54, 99-110.
    • (2002) Hum. Hered. , vol.54 , pp. 99-110
    • Sun, L.1
  • 63
    • 0028782110 scopus 로고
    • Monte Carlo likelihood in the genetic mapping of complex traits
    • Thompson, E.A. (1994) Monte Carlo likelihood in the genetic mapping of complex traits. Philos. Trans. R. Soc. Lond. Ser. B, 344, 345-351.
    • (1994) Philos. Trans. R. Soc. Lond. Ser. B , vol.344 , pp. 345-351
    • Thompson, E.A.1
  • 64
    • 79960140574 scopus 로고    scopus 로고
    • The structure of genetic linkage data: From LIPED to 1MSNPs
    • Thompson, E.A. (2011) The structure of genetic linkage data: from LIPED to 1MSNPs. Hum. Hered., 71, 86-96.
    • (2011) Hum. Hered. , vol.71 , pp. 86-96
    • Thompson, E.A.1
  • 66
    • 37149037924 scopus 로고    scopus 로고
    • Multilocus lod scores in large pedigrees: Combination of exact and approximate calculations
    • Tong, L.P. and Thompson, E. (2008) Multilocus lod scores in large pedigrees: combination of exact and approximate calculations. Hum. Hered., 65, 142-153.
    • (2008) Hum. Hered. , vol.65 , pp. 142-153
    • Tong, L.P.1    Thompson, E.2
  • 67
    • 84891855440 scopus 로고    scopus 로고
    • The role and challenges of exome sequencing in studies of human diseases
    • Wang, Z. et al. (2013) The role and challenges of exome sequencing in studies of human diseases. Front. Genet., 4, 160.
    • (2013) Front. Genet. , vol.4 , pp. 160
    • Wang, Z.1
  • 68
    • 21444450506 scopus 로고    scopus 로고
    • SNPLINK: Multipoint linkage analysis of densely distributed SNP data incorporating automated linkage disequilibrium removal
    • Webb, E.L. et al. (2005) SNPLINK: multipoint linkage analysis of densely distributed SNP data incorporating automated linkage disequilibrium removal. Bioinformatics, 21, 3060-3061.
    • (2005) Bioinformatics , vol.21 , pp. 3060-3061
    • Webb, E.L.1
  • 69
    • 84866730927 scopus 로고    scopus 로고
    • The role of large pedigrees in an era of high-throughput sequencing
    • Wijsman, E.M. (2012) The role of large pedigrees in an era of high-throughput sequencing. Hum. Genet., 131, 1555-1563.
    • (2012) Hum. Genet. , vol.131 , pp. 1555-1563
    • Wijsman, E.M.1
  • 70
    • 33751103455 scopus 로고    scopus 로고
    • Multipoint linkage analysis with many multiallelic or dense diallelic markers: MCMC provides practical approaches 'for genome scans on general pedigrees
    • Wijsman, E.M. et al. (2006) Multipoint linkage analysis with many multiallelic or dense diallelic markers: MCMC provides practical approaches 'for genome scans on general pedigrees. Am. J. Hum. Genet., 79, 846-858.
    • (2006) Am. J. Hum. Genet. , vol.79 , pp. 846-858
    • Wijsman, E.M.1
  • 71
    • 30344437918 scopus 로고    scopus 로고
    • Comparison of single-nucleotide polymorphisms and microsatellite markers for linkage analysis in the COGA and simulated data sets for Genetic Analysis Workshop 14: Presentation groups 1, 2, and 3
    • Wilcox, M.A. et al. (2005) Comparison of single-nucleotide polymorphisms and microsatellite markers for linkage analysis in the COGA and simulated data sets for Genetic Analysis Workshop 14: presentation groups 1, 2, and 3. Genet. Epidemiol., 29(Suppl. 1), S7-S28.
    • (2005) Genet. Epidemiol. , vol.29 , pp. S7-S28
    • Wilcox, M.A.1
  • 72
    • 84880811225 scopus 로고    scopus 로고
    • Exome sequencing and linkage analysis identified tenascin-C (TNC) as a novel causative gene in nonsyndromic hearing loss
    • Zhao, Y. et al. (2013) Exome sequencing and linkage analysis identified tenascin-C (TNC) as a novel causative gene in nonsyndromic hearing loss. PLoS One, 8, e69549.
    • (2013) PLoS One , vol.8 , pp. e69549
    • Zhao, Y.1
  • 73
    • 84875647144 scopus 로고    scopus 로고
    • QC-chain: Fast and holistic quality control method for next-generation sequencing data
    • Zhou, Q. et al. (2013) QC-Chain: fast and holistic quality control method for next-generation sequencing data. PLoS One, 8, e60234.
    • (2013) PLoS One , vol.8 , pp. e60234
    • Zhou, Q.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.