-
1
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
Encode Project Consortium
-
Encode Project Consortium. (2012) An integrated encyclopedia of DNA elements in the human genome. Nature, 489, 57-74.
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
-
2
-
-
78651447845
-
The uniqueome: A mappability resource for short-tag sequencing
-
Koehler, R. , Issac, H. , Cloonan, N. and Grimmond, S. M. (2011) The uniqueome: a mappability resource for short-tag sequencing. Bioinformatics, 27, 272-274.
-
(2011)
Bioinformatics
, Issue.27
, pp. 272-274
-
-
Koehler, R.1
Issac, H.2
Cloonan, N.3
Grimmond, S.M.4
-
3
-
-
84855989774
-
Fast computation and applications of genome mappability
-
Derrien, T. , Estelle, J. , Marco Sola, S. , Knowles, D. G. , Raineri, E. , Guigo, R. and Ribeca, P. (2012) Fast computation and applications of genome mappability. PLoS One, 7, e30377.
-
(2012)
PLoS One
, vol.7
, pp. e30377
-
-
Derrien, T.1
Estelle, J.2
Marco Sola, S.3
Knowles, D.G.4
Raineri, E.5
Guigo, R.6
Ribeca, P.7
-
4
-
-
84864326252
-
Genomic dark matter: The reliability of short read mapping illustrated by the genome mappability score
-
Lee, H. and Schatz, M. C. (2012) Genomic dark matter: the reliability of short read mapping illustrated by the genome mappability score. Bioinformatics, 28, 2097-2105.
-
(2012)
Bioinformatics
, vol.28
, pp. 2097-2105
-
-
Lee, H.1
Schatz, M.C.2
-
5
-
-
1942499458
-
An assessment of the sequence gaps: Unfinished business in a finished human genome
-
Eichler, E. E. , Clark, R. A. and She, X. (2004) An assessment of the sequence gaps: unfinished business in a finished human genome. Nat. Rev. Genet. , 5, 345-354.
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 345-354
-
-
Eichler, E.E.1
Clark, R.A.2
She, X.3
-
6
-
-
84913546864
-
Towards better understanding of artifacts in variant calling from high-coverage samples
-
Li, H. (2014) Towards better understanding of artifacts in variant calling from high-coverage samples. Bioinformatics, 30, 2843-2851.
-
(2014)
Bioinformatics
, vol.30
, pp. 2843-2851
-
-
Li, H.1
-
7
-
-
35648976118
-
The diploid genome sequence of an individual human
-
Levy, S. , Sutton, G. , Ng, P. C. , Feuk, L. , Halpern, A. L. , Walenz, B. P. , Axelrod, N. , Huang, J. , Kirkness, E. F. , Denisov, G. et al. (2007) The diploid genome sequence of an individual human. PLoS Biol. , 5, e254.
-
(2007)
PLoS Biol.
, vol.5
, pp. e254
-
-
Levy, S.1
Sutton, G.2
Ng, P.C.3
Feuk, L.4
Halpern, A.L.5
Walenz, B.P.6
Axelrod, N.7
Huang, J.8
Kirkness, E.F.9
Denisov, G.10
-
8
-
-
23844525077
-
Repbase Update, a database of eukaryotic repetitive elements
-
Jurka, J. , Kapitonov, V. V. , Pavlicek, A. , Klonowski, P. , Kohany, O. and Walichiewicz, J. (2005) Repbase Update, a database of eukaryotic repetitive elements. Cytogenet. Genome Res. , 110, 462-467.
-
(2005)
Cytogenet. Genome Res.
, vol.110
, pp. 462-467
-
-
Jurka, J.1
Kapitonov, V.V.2
Pavlicek, A.3
Klonowski, P.4
Kohany, O.5
Walichiewicz, J.6
-
9
-
-
0033555906
-
Tandem repeats finder: A program to analyze DNA sequences
-
Benson, G. (1999) Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. , 27, 573-580.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 573-580
-
-
Benson, G.1
-
10
-
-
84873805996
-
Sequences associated with centromere competency in the human genome
-
Hayden, K. E. , Strome, E. D. , Merrett, S. L. , Lee, H. R. , Rudd, M. K. and Willard, H. F. (2013) Sequences associated with centromere competency in the human genome. Mol. Cell Biol. , 33, 763-772.
-
(2013)
Mol. Cell Biol.
, vol.33
, pp. 763-772
-
-
Hayden, K.E.1
Strome, E.D.2
Merrett, S.L.3
Lee, H.R.4
Rudd, M.K.5
Willard, H.F.6
-
11
-
-
84898762051
-
Centromere reference models for human chromosomes X and y satellite arrays
-
Miga, K. H. , Newton, Y. , Jain, M. , Altemose, N. , Willard, H. F. and Kent, W. J. (2014) Centromere reference models for human chromosomes X and Y satellite arrays. Genome Res. , 24, 697-707.
-
(2014)
Genome Res.
, vol.24
, pp. 697-707
-
-
Miga, K.H.1
Newton, Y.2
Jain, M.3
Altemose, N.4
Willard, H.F.5
Kent, W.J.6
-
12
-
-
84901684467
-
Genomic characterization of large heterochromatic gaps in the human genome assembly
-
Altemose, N. , Miga, K. H. , Maggioni, M. and Willard, H. F. (2014) Genomic characterization of large heterochromatic gaps in the human genome assembly. PLoS Comput. Biol. , 10, e1003628.
-
(2014)
PLoS Comput. Biol.
, vol.10
, pp. e1003628
-
-
Altemose, N.1
Miga, K.H.2
Maggioni, M.3
Willard, H.F.4
-
13
-
-
33846880495
-
Highly efficient concerted evolution in the ribosomal DNA repeats: Total rDNA repeat variation revealed by whole-genome shotgun sequence data
-
Ganley, A. R. and Kobayashi, T. (2007) Highly efficient concerted evolution in the ribosomal DNA repeats: total rDNA repeat variation revealed by whole-genome shotgun sequence data. Genome Res. , 17, 184-191.
-
(2007)
Genome Res.
, vol.17
, pp. 184-191
-
-
Ganley, A.R.1
Kobayashi, T.2
-
14
-
-
0029067907
-
Complete sequence of the 43-kb human ribosomal DNA repeat: Analysis of the intergenic spacer
-
Gonzalez, I. L. and Sylvester, J. E. (1995) Complete sequence of the 43-kb human ribosomal DNA repeat: analysis of the intergenic spacer. Genomics, 27, 320-328.
-
(1995)
Genomics
, vol.27
, pp. 320-328
-
-
Gonzalez, I.L.1
Sylvester, J.E.2
-
15
-
-
33644875533
-
MtDB: Human Mitochondrial Genome Database, a resource for population genetics and medical sciences
-
Ingman, M. and Gyllensten, U. (2006) mtDB: Human Mitochondrial Genome Database, a resource for population genetics and medical sciences. Nucleic Acids Res. , 34, D749-D751.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. D749-D751
-
-
Ingman, M.1
Gyllensten, U.2
-
16
-
-
0023762872
-
Mitochondrial DNA molecules and virtual number of mitochondria per cell in mammalian cells
-
Robin, E. D. and Wong, R. (1988) Mitochondrial DNA molecules and virtual number of mitochondria per cell in mammalian cells. J. Cell. Physiol. , 136, 507-513.
-
(1988)
J Cell. Physiol.
, vol.136
, pp. 507-513
-
-
Robin, E.D.1
Wong, R.2
-
17
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS
-
Zhang, Y. , Liu, T. , Meyer, C. A. , Eeckhoute, J. , Johnson, D. S. , Bernstein, B. E. , Nusbaum, C. , Myers, R. M. , Brown, M. , Li, W. et al. (2008) Model-based analysis of ChIP-Seq (MACS). Genome Biol. , 9, R137.
-
(2008)
Genome Biol.
, vol.9
, pp. R137
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nusbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
-
18
-
-
33846057724
-
NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
-
Pruitt, K. D. , Tatusova, T. and Maglott, D. R. (2007) NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res. , 35, D61-D65.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. D61-D65
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
19
-
-
77951770756
-
BEDTools: A flexible suite of utilities for comparing genomic features
-
Quinlan, A. R. and Hall, I. M. (2010) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics, 26, 841-842.
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
20
-
-
84882766972
-
Developmental fate and cellular maturity encoded in human regulatory DNA landscapes
-
Stergachis, A. B. , Neph, S. , Reynolds, A. , Humbert, R. , Miller, B. , Paige, S. L. , Vernot, B. , Cheng, J. B. , Thurman, R. E. , Sandstrom, R. et al. (2013) Developmental fate and cellular maturity encoded in human regulatory DNA landscapes. Cell, 154, 888-903.
-
(2013)
Cell
, vol.154
, pp. 888-903
-
-
Stergachis, A.B.1
Neph, S.2
Reynolds, A.3
Humbert, R.4
Miller, B.5
Paige, S.L.6
Vernot, B.7
Cheng, J.B.8
Thurman, R.E.9
Sandstrom, R.10
-
21
-
-
84860860685
-
Evolution of human-specific neural SRGAP2 genes by incomplete segmental duplication
-
Dennis, M. Y. , Nuttle, X. , Sudmant, P. H. , Antonacci, F. , Graves, T. A. , Nefedov, M. , Rosenfeld, J. A. , Sajjadian, S. , Malig, M. , Kotkiewicz, H. et al. (2012) Evolution of human-specific neural SRGAP2 genes by incomplete segmental duplication. Cell, 149, 912-922.
-
(2012)
Cell
, vol.149
, pp. 912-922
-
-
Dennis, M.Y.1
Nuttle, X.2
Sudmant, P.H.3
Antonacci, F.4
Graves, T.A.5
Nefedov, M.6
Rosenfeld, J.A.7
Sajjadian, S.8
Malig, M.9
Kotkiewicz, H.10
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