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Volumn 43, Issue 20, 2015, Pages

Utilizing mapping targets of sequences underrepresented in the reference assembly to reduce false positive alignments

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONTROLLED STUDY; GENE MAPPING; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC DATABASE; GENOME ASSEMBLY; HUMAN; INVERTED REPEAT; NUCLEOTIDE REPEAT; PRIORITY JOURNAL; PROTEIN ASSEMBLY; REFERENCE VALUE; SEQUENCE ALIGNMENT; ARTIFACT; CHEMISTRY; EVALUATION STUDY; GENOMICS; HUMAN GENOME; NUCLEIC ACID DATABASE; PROCEDURES;

EID: 84950124321     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkv671     Document Type: Article
Times cited : (26)

References (21)
  • 1
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • Encode Project Consortium
    • Encode Project Consortium. (2012) An integrated encyclopedia of DNA elements in the human genome. Nature, 489, 57-74.
    • (2012) Nature , vol.489 , pp. 57-74
  • 2
    • 78651447845 scopus 로고    scopus 로고
    • The uniqueome: A mappability resource for short-tag sequencing
    • Koehler, R. , Issac, H. , Cloonan, N. and Grimmond, S. M. (2011) The uniqueome: a mappability resource for short-tag sequencing. Bioinformatics, 27, 272-274.
    • (2011) Bioinformatics , Issue.27 , pp. 272-274
    • Koehler, R.1    Issac, H.2    Cloonan, N.3    Grimmond, S.M.4
  • 4
    • 84864326252 scopus 로고    scopus 로고
    • Genomic dark matter: The reliability of short read mapping illustrated by the genome mappability score
    • Lee, H. and Schatz, M. C. (2012) Genomic dark matter: the reliability of short read mapping illustrated by the genome mappability score. Bioinformatics, 28, 2097-2105.
    • (2012) Bioinformatics , vol.28 , pp. 2097-2105
    • Lee, H.1    Schatz, M.C.2
  • 5
    • 1942499458 scopus 로고    scopus 로고
    • An assessment of the sequence gaps: Unfinished business in a finished human genome
    • Eichler, E. E. , Clark, R. A. and She, X. (2004) An assessment of the sequence gaps: unfinished business in a finished human genome. Nat. Rev. Genet. , 5, 345-354.
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 345-354
    • Eichler, E.E.1    Clark, R.A.2    She, X.3
  • 6
    • 84913546864 scopus 로고    scopus 로고
    • Towards better understanding of artifacts in variant calling from high-coverage samples
    • Li, H. (2014) Towards better understanding of artifacts in variant calling from high-coverage samples. Bioinformatics, 30, 2843-2851.
    • (2014) Bioinformatics , vol.30 , pp. 2843-2851
    • Li, H.1
  • 9
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: A program to analyze DNA sequences
    • Benson, G. (1999) Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. , 27, 573-580.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 573-580
    • Benson, G.1
  • 11
    • 84898762051 scopus 로고    scopus 로고
    • Centromere reference models for human chromosomes X and y satellite arrays
    • Miga, K. H. , Newton, Y. , Jain, M. , Altemose, N. , Willard, H. F. and Kent, W. J. (2014) Centromere reference models for human chromosomes X and Y satellite arrays. Genome Res. , 24, 697-707.
    • (2014) Genome Res. , vol.24 , pp. 697-707
    • Miga, K.H.1    Newton, Y.2    Jain, M.3    Altemose, N.4    Willard, H.F.5    Kent, W.J.6
  • 12
    • 84901684467 scopus 로고    scopus 로고
    • Genomic characterization of large heterochromatic gaps in the human genome assembly
    • Altemose, N. , Miga, K. H. , Maggioni, M. and Willard, H. F. (2014) Genomic characterization of large heterochromatic gaps in the human genome assembly. PLoS Comput. Biol. , 10, e1003628.
    • (2014) PLoS Comput. Biol. , vol.10 , pp. e1003628
    • Altemose, N.1    Miga, K.H.2    Maggioni, M.3    Willard, H.F.4
  • 13
    • 33846880495 scopus 로고    scopus 로고
    • Highly efficient concerted evolution in the ribosomal DNA repeats: Total rDNA repeat variation revealed by whole-genome shotgun sequence data
    • Ganley, A. R. and Kobayashi, T. (2007) Highly efficient concerted evolution in the ribosomal DNA repeats: total rDNA repeat variation revealed by whole-genome shotgun sequence data. Genome Res. , 17, 184-191.
    • (2007) Genome Res. , vol.17 , pp. 184-191
    • Ganley, A.R.1    Kobayashi, T.2
  • 14
    • 0029067907 scopus 로고
    • Complete sequence of the 43-kb human ribosomal DNA repeat: Analysis of the intergenic spacer
    • Gonzalez, I. L. and Sylvester, J. E. (1995) Complete sequence of the 43-kb human ribosomal DNA repeat: analysis of the intergenic spacer. Genomics, 27, 320-328.
    • (1995) Genomics , vol.27 , pp. 320-328
    • Gonzalez, I.L.1    Sylvester, J.E.2
  • 15
    • 33644875533 scopus 로고    scopus 로고
    • MtDB: Human Mitochondrial Genome Database, a resource for population genetics and medical sciences
    • Ingman, M. and Gyllensten, U. (2006) mtDB: Human Mitochondrial Genome Database, a resource for population genetics and medical sciences. Nucleic Acids Res. , 34, D749-D751.
    • (2006) Nucleic Acids Res. , vol.34 , pp. D749-D751
    • Ingman, M.1    Gyllensten, U.2
  • 16
    • 0023762872 scopus 로고
    • Mitochondrial DNA molecules and virtual number of mitochondria per cell in mammalian cells
    • Robin, E. D. and Wong, R. (1988) Mitochondrial DNA molecules and virtual number of mitochondria per cell in mammalian cells. J. Cell. Physiol. , 136, 507-513.
    • (1988) J Cell. Physiol. , vol.136 , pp. 507-513
    • Robin, E.D.1    Wong, R.2
  • 18
    • 33846057724 scopus 로고    scopus 로고
    • NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
    • Pruitt, K. D. , Tatusova, T. and Maglott, D. R. (2007) NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res. , 35, D61-D65.
    • (2007) Nucleic Acids Res. , vol.35 , pp. D61-D65
    • Pruitt, K.D.1    Tatusova, T.2    Maglott, D.R.3
  • 19
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • Quinlan, A. R. and Hall, I. M. (2010) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics, 26, 841-842.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.