메뉴 건너뛰기




Volumn 16, Issue 1, 2015, Pages

ChromContact: A web tool for analyzing spatial contact of chromosomes from Hi-C data

Author keywords

Enhancer; Hi C; Long range interaction

Indexed keywords

CHROMATIN IMMUNOPRECIPITATION; CHROMOSOME; DNA STRUCTURE; ENHANCER REGION; GENETIC MARKER; GENOME; PROMOTER REGION; ANIMAL; COMPUTER INTERFACE; GENETIC DATABASE; GENETICS; GENOMICS; HUMAN; PROCEDURES; WEB BROWSER;

EID: 84949666601     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/s12864-015-2282-x     Document Type: Article
Times cited : (4)

References (16)
  • 1
    • 70349873824 scopus 로고    scopus 로고
    • Comprehensive mapping of long-range interactions reveals folding principles of the human genome
    • Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T, Telling A, et al. Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science. 2009;326:289-93.
    • (2009) Science , vol.326 , pp. 289-293
    • Lieberman-Aiden, E.1    Berkum, N.L.2    Williams, L.3    Imakaev, M.4    Ragoczy, T.5    Telling, A.6
  • 2
    • 84861095603 scopus 로고    scopus 로고
    • Topological domains in mammalian genomes identified by analysis of chromatin interactions
    • Dixon JR, Selvaraj S, Yue F, Kim A, Li Y, Shen Y, et al. Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature. 2012;485:376-80.
    • (2012) Nature , vol.485 , pp. 376-380
    • Dixon, J.R.1    Selvaraj, S.2    Yue, F.3    Kim, A.4    Li, Y.5    Shen, Y.6
  • 3
    • 84887620842 scopus 로고    scopus 로고
    • A high-resolution map of the three-dimensional chromatin interactome in human cells
    • Jin F, Li Y, Dixon JR, Selvaraj S, Ye Z, Lee AY, et al. A high-resolution map of the three-dimensional chromatin interactome in human cells. Nature. 2013;503:290-4.
    • (2013) Nature , vol.503 , pp. 290-294
    • Jin, F.1    Li, Y.2    Dixon, J.R.3    Selvaraj, S.4    Ye, Z.5    Lee, A.Y.6
  • 4
    • 84919949716 scopus 로고    scopus 로고
    • A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping
    • Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, et al. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell. 2014;159:1665-80.
    • (2014) Cell , vol.159 , pp. 1665-1680
    • Rao, S.S.1    Huntley, M.H.2    Durand, N.C.3    Stamenova, E.K.4    Bochkov, I.D.5    Robinson, J.T.6
  • 7
    • 84891814834 scopus 로고    scopus 로고
    • Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser
    • Raney BJ, Dreszer TR, Barber GP, Clawson H, Fujita PA, Wang T, et al. Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser. Bioinformatics. 2014;30:1003-5.
    • (2014) Bioinformatics , vol.30 , pp. 1003-1005
    • Raney, B.J.1    Dreszer, T.R.2    Barber, G.P.3    Clawson, H.4    Fujita, P.A.5    Wang, T.6
  • 11
    • 68149180901 scopus 로고    scopus 로고
    • The 8q24 cancer risk variant rs6983267 shows long-range interaction with MYC in colorectal cancer
    • Pomerantz MM, Ahmadiyeh N, Jia L, Herman P, Verzi MP, Doddapaneni H, et al. The 8q24 cancer risk variant rs6983267 shows long-range interaction with MYC in colorectal cancer. Nat Genet. 2009;41:882-4.
    • (2009) Nat Genet , vol.41 , pp. 882-884
    • Pomerantz, M.M.1    Ahmadiyeh, N.2    Jia, L.3    Herman, P.4    Verzi, M.P.5    Doddapaneni, H.6
  • 12
    • 68149170044 scopus 로고    scopus 로고
    • The common colorectal cancer predisposition SNP rs6983267 at chromosome 8q24 confers potential to enhanced Wnt signaling
    • Tuupanen S, Turunen M, Lehtonen R, Hallikas O, Vanharanta S, Kivioja T, et al. The common colorectal cancer predisposition SNP rs6983267 at chromosome 8q24 confers potential to enhanced Wnt signaling. Nat Genet. 2009;41:885-90.
    • (2009) Nat Genet , vol.41 , pp. 885-890
    • Tuupanen, S.1    Turunen, M.2    Lehtonen, R.3    Hallikas, O.4    Vanharanta, S.5    Kivioja, T.6
  • 13
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature. 2012;489:57-74.
    • (2012) Nature , vol.489 , pp. 57-74
  • 14
    • 84870794209 scopus 로고    scopus 로고
    • A novel long-range enhancer regulates postnatal expression of Zeb2: Implications for Mowat-Wilson syndrome phenotypes
    • El-Kasti MM, Wells T, Carter DA. A novel long-range enhancer regulates postnatal expression of Zeb2: Implications for Mowat-Wilson syndrome phenotypes. Hum Mol Genet. 2012;21:5429-42.
    • (2012) Hum Mol Genet , vol.21 , pp. 5429-5442
    • El-Kasti, M.M.1    Wells, T.2    Carter, D.A.3
  • 15
    • 84896710720 scopus 로고    scopus 로고
    • A survey of ancient conserved non-coding elements in the PAX6 locus reveals a landscape of interdigitated cis-regulatory archipelagos
    • Bhatia S, Monahan J, Ravi V, Gautier P, Murdoch E, Brenner S, et al. A survey of ancient conserved non-coding elements in the PAX6 locus reveals a landscape of interdigitated cis-regulatory archipelagos. Dev Biol. 2014;387:214-28.
    • (2014) Dev Biol , vol.387 , pp. 214-228
    • Bhatia, S.1    Monahan, J.2    Ravi, V.3    Gautier, P.4    Murdoch, E.5    Brenner, S.6
  • 16
    • 84891353473 scopus 로고    scopus 로고
    • Enhancer mutations and phenotype modularity
    • Gordon CT, Lyonnet S. Enhancer mutations and phenotype modularity. Nat Genet. 2014;46:3-4.
    • (2014) Nat Genet , vol.46 , pp. 3-4
    • Gordon, C.T.1    Lyonnet, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.