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Volumn 64, Issue 5, 2015, Pages 768-777

Which phylogenetic networks are merely trees with additional arcs?

Author keywords

2 SAT; Algorithm; Antichain; Phylogenetic network; Phylogenetic tree; Reticulate evolution

Indexed keywords

ALGORITHM; CLASSIFICATION; COMPUTER SIMULATION; PHYLOGENY; STANDARDS;

EID: 84949290159     PISSN: 10635157     EISSN: 1076836X     Source Type: Journal    
DOI: 10.1093/sysbio/syv037     Document Type: Article
Times cited : (148)

References (27)
  • 1
    • 0001548856 scopus 로고
    • A linear-time algorithm for testing the truth of certain quantified Boolean formulas
    • Aspvall B., Plass M.F., Tarjan R.E. 1979. A linear-time algorithm for testing the truth of certain quantified Boolean formulas. Informa. Process. Lett. 8: 121-123.
    • (1979) Informa. Process. Lett. , vol.8 , pp. 121-123
    • Aspvall, B.1    Plass, M.F.2    Tarjan, R.E.3
  • 3
    • 84874708873 scopus 로고    scopus 로고
    • Systematic inference of highways of horizontal gene transfer in prokaryotes
    • Bansal M.S., Banay G., Harlow T.J., Gogarten J.P., Shamir R. 2013. Systematic inference of highways of horizontal gene transfer in prokaryotes. Bioinformatics 29: 571-579.
    • (2013) Bioinformatics , vol.29 , pp. 571-579
    • Bansal, M.S.1    Banay, G.2    Harlow, T.J.3    Gogarten, J.P.4    Shamir, R.5
  • 5
    • 84927714664 scopus 로고    scopus 로고
    • Improvedgene tree error correction in thepresence of horizontal gene transfer
    • Bansal M.S.,WuY.-C.,AlmE.J.,Kellis M. 2014. Improvedgene tree error correction in thepresence of horizontal gene transfer. Bioinformatics 31: 1211-1218.
    • (2014) Bioinformatics , vol.31 , pp. 1211-1218
    • Bansal, M.S.1    Wu, Y.-C.2    Alm, E.J.3    Kellis, M.4
  • 6
    • 1542347067 scopus 로고    scopus 로고
    • Neighbor-net, an agglomerative method for the construction of phylogenetic networks
    • Bryant D., Moulton V. 2003. Neighbor-net, an agglomerative method for the construction of phylogenetic networks. Mol. Biol. Evol. 21: 255-265.
    • (2003) Mol. Biol. Evol. , vol.21 , pp. 255-265
    • Bryant, D.1    Moulton, V.2
  • 7
    • 84919389879 scopus 로고    scopus 로고
    • Phylogenetic networks that display a tree twice
    • Cordue P., Linz S., Semple C. 2014. Phylogenetic networks that display a tree twice. Bull. Math. Biol. 76: 2664-2679.
    • (2014) Bull. Math. Biol. , vol.76 , pp. 2664-2679
    • Cordue, P.1    Linz, S.2    Semple, C.3
  • 8
    • 33750810896 scopus 로고    scopus 로고
    • The tree of one percent
    • Dagan T., Martin W.F. 2006. The tree of one percent. Genome Biol. 7: 118.
    • (2006) Genome Biol. , vol.7 , pp. 118
    • Dagan, T.1    Martin, W.F.2
  • 9
    • 33847790997 scopus 로고    scopus 로고
    • Pattern pluralism and the tree of life hypothesis
    • Doolittle W.F., Bapteste E. 2007. Pattern pluralism and the tree of life hypothesis. Proc. Natl Acad. Sci. USA 104: 2043-2049.
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 2043-2049
    • Doolittle, W.F.1    Bapteste, E.2
  • 10
    • 67651064681 scopus 로고    scopus 로고
    • Horizontal gene transfer from extinct and extant lineages: Biological innovation and the coral of life
    • Fournier G.P., Huang J., Gogarten J.P. 2009. Horizontal gene transfer from extinct and extant lineages: Biological innovation and the coral of life. Phil. Trans. R. Soc. B. 364.1527: 2229-2239.
    • (2009) Phil. Trans. R. Soc. B. , vol.364 , Issue.1527 , pp. 2229-2239
    • Fournier, G.P.1    Huang, J.2    Gogarten, J.P.3
  • 11
    • 84920590604 scopus 로고    scopus 로고
    • Tree-like reticulation networks - when do tree-like distances also support reticulate evolution? Math
    • Francis A.R., Steel M. 2015. Tree-like reticulation networks - when do tree-like distances also support reticulate evolution? Math. Biosci. 259: 12-19.
    • (2015) Biosci. , vol.259 , pp. 12-19
    • Francis, A.R.1    Steel, M.2
  • 12
    • 84926309521 scopus 로고    scopus 로고
    • Locating a tree in a phylogenetic network in quadratic time
    • In: Przytycka T., editor LectureNotes inComputer Science, Springer, Switzerland
    • Gambette P., Gunawan A.D.M., Labarre A., Vialette S., Zhang L. 2015. Locating a tree in a phylogenetic network in quadratic time. In: Przytycka T., editor. Research in Computational Molecular Biology, LectureNotes inComputer Science, Springer, Switzerland, vol. 9029, p. 96-107.
    • (2015) Research in Computational Molecular Biology , vol.9029 , pp. 96-107
    • Gambette, P.1    Gunawan, A.D.M.2    Labarre, A.3    Vialette, S.4    Zhang, L.5
  • 13
    • 85006688090 scopus 로고    scopus 로고
    • The power of supernetworks to distinguish hybridisation from lineagesorting via collections of gene trees
    • Holland B., Bentham S., Lockhart P., Moulton V., Huber K. 2008. The power of supernetworks to distinguish hybridisation from lineagesorting via collections of gene trees. BMC Evol. Biol. 1108: 202.
    • (2008) BMC Evol. Biol. , vol.1108 , pp. 202
    • Holland, B.1    Bentham, S.2    Lockhart, P.3    Moulton, V.4    Huber, K.5
  • 16
    • 9744227793 scopus 로고
    • The decision problem for a class of first-order formulas in which all disjunctions are binary
    • KromM.R. 1967. The decision problem for a class of first-order formulas in which all disjunctions are binary. Zeitschrift fur Mathematische Logik und Grundlagen der Mathematik 13: 15-20.
    • (1967) Zeitschrift fur Mathematische Logik und Grundlagen der Mathematik , vol.13 , pp. 15-20
    • Krom, M.R.1
  • 18
    • 85006677530 scopus 로고    scopus 로고
    • Early evolution without a tree of life
    • MartinW.F. 2011. Early evolution without a tree of life. Biol. Direct 36: 6.
    • (2011) Biol. Direct , vol.36 , pp. 6
    • Martin, W.F.1
  • 19
    • 84873603321 scopus 로고    scopus 로고
    • Recovering the treelike trend of evolution despite extensive lateral genetic transfer: A probabilistic analysis
    • Roch S. 2013. Recovering the treelike trend of evolution despite extensive lateral genetic transfer: A probabilistic analysis. J. Comput. Biol. 20: 93-112.
    • (2013) J. Comput. Biol. , vol.20 , pp. 93-112
    • Roch, S.1
  • 21
    • 84874438887 scopus 로고    scopus 로고
    • Identifying a species tree subject to random lateral gene transfer
    • Steel M., Linz S., Huson D., Sanderson M. 2013. Identifying a species tree subject to random lateral gene transfer. J. Theor. Biol. 332: 81-93.
    • (2013) J. Theor. Biol. , vol.332 , pp. 81-93
    • Steel, M.1    Linz, S.2    Huson, D.3    Sanderson, M.4
  • 24
    • 0000142982 scopus 로고
    • The complexity of enumeration and reliability problems
    • Valiant L. 1979. The complexity of enumeration and reliability problems. SICOMP 8: 410-421.
    • (1979) SICOMP , vol.8 , pp. 410-421
    • Valiant, L.1
  • 25
    • 84976529603 scopus 로고    scopus 로고
    • Different topological restrictions of rooted phylogenetic networks
    • Available from
    • van Iersel L. 2013. Different topological restrictions of rooted phylogenetic networks. Which make biological sense? Available from: Http://phylonetworks.blogspot.nl/2013/03/differenttopological- restrictions-of.html.
    • (2013) Which make Biological Sense?
    • Van Iersel, L.1
  • 27
    • 77951237526 scopus 로고    scopus 로고
    • Properties of normal phylogenetic networks
    • Willson, S. 2010. Properties of normal phylogenetic networks. Bull. Math. Biol. 72: 340-358.
    • (2010) Bull. Math. Biol. , vol.72 , pp. 340-358
    • Willson, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.