Transcriptome analysis in Haematococcus pluvialis: Astaxanthin induction by salicylic acid (SA) and jasmonic acid (JA)

PLoS ONE

Volumn 10, Issue 10, 2015, Pages

  Gao, Zhengquan ^a   Li, Yan ^c,d   Wu, Guanxun ^a   Li, Guoqiang ^a   Sun, Haifeng ^a   Deng, Suzhen ^a   Shen, Yicheng ^a   Chen, Guoqiang ^a   Zhang, Ruihao ^a   Meng, Chunxiao ^a   Zhang, Xiaowen ^b  

^a SHANDONG UNIVERSITY OF TECHNOLOGY   (China)

^b YELLOW SEA FISHERIES RESEARCH INSTITUTE   (China)

^c JAMES COOK UNIVERSITY   (Australia)

^d UNIVERSITY OF QUEENSLAND   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ASTAXANTHIN; B3 PROTEIN; BASIC LEUCINE ZIPPER TRANSCRIPTION FACTOR; BHLH PROTEIN; C2H2 PROTEIN; C3H PROTEIN; CCAAT ENHANCER BINDING PROTEIN; E2F DP PROTEIN; ETHYLENE RESPONSE FACTOR; HSF PROTEIN; JASMONIC ACID; JUMONJI PROTEIN; MADS DOMAIN PROTEIN; MBF1 PROTEIN; NF X1 PROTEIN; NF YB PROTEIN; NF YC PROTEIN; PROTEIN MYB; SALICYLIC ACID; SET PROTEIN; SNF2 PROTEIN; TALE PROTEIN; TATA BINDING PROTEIN; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR AP 2; TRANSCRIPTION FACTOR GATA; UNCLASSIFIED DRUG; WRKY PROTEIN; ZINC FINGER PROTEIN; CYCLOPENTANE DERIVATIVE; OXYLIPIN; TRANSCRIPTOME; XANTHOPHYLL;

BIOSYNTHESIS; COMPARATIVE STUDY; CONTROLLED STUDY; CRTR B GENE; CRTZ GENE; GENE; GENE EXPRESSION; GENETIC IDENTIFICATION; GENETIC REGULATION; GENETIC TRANSCRIPTION; HAEMATOCOCCUS PLUVIALIS; MICROALGA; NONHUMAN; PDS GENE; PSY GENE; REVIEW; RNA SEQUENCE; STRESS; UPREGULATION; VITAMIN METABOLISM; ZDS GENE; ZEP GENE; DRUG EFFECTS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; GREEN ALGA;

CHLOROPHYTA; CYCLOPENTANES; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; MICROALGAE; OXYLIPINS; SALICYLIC ACID; TRANSCRIPTOME; UP-REGULATION; XANTHOPHYLLS;

EID: 84949256897     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0140609     Document Type: Review

References (39)

1. Guerin M, Huntley ME, OlaizolaM (2003) Haematococcus astaxanthin: applications for human health and nutrition. Trends Biotec 21: 210-216.
2. Gwak Y, Hwang YS, Wang BB, Kim M, Jeong J, Lee CG, et al. (2014) Comparative analyses of lipi-domes and transcriptomes reveal a concerted action of multiple defensive systems against photooxida-tive stress in Haematococcuspluvialis. J Exp Bot 65: 4317-4334. doi: 10.1093/jxb/eru206 PMID: 24821952
3. Boussiba S, Vonshak A (1991) Astaxanthin accumulation in the green alga Haematococcus pluvialis. Plant Cell Physiol 32:1077-1082.
4. Borowitzka M A, Huisman JM, Osborn A. (1991) Culture of the astaxanthin-producing green alga Haematococcus pluvialis. J Appl Phycol 3: 295-304.
5. Raman V and Ravi S (2011) Effect of salicylic acid and methyl jasmonate on antioxidant systems of Haematococcus pluvialis. Acta Physiol Plant 33:1043-1049.
6. Gao ZQ, Meng CX, Zhang XW, Xu D, Zhao YF, Wang YT, et al. (2012) Differential expression of carote-nogenic genes, associated changes on astaxanthin production and photosynthesis features induced by JA in H. pluvialis. PLoS ONE 7: e42243. doi: 10.1371/journal.pone.0042243 PMID: 22870309
7. Gao ZQ, Meng CX, Zhang XW, Xu D, Miao XX, Wang YT, et al. (2012) Induction of salicylic acid (SA) on transcriptional expression of eight carotenoid genes and astaxanthin accumulation in Haematococcus pluvialis. Enzyme Micro Technol 51: 225-230.
8. Zhu Q, Zhang JT, Gao XS, Tong JH, Xiao LT, Li WB, et al. (2010)TheArabidopsisAP2/ERFtranscription factor RAP2.6 participates in ABA, salt and osmotic stress responses. Gene 457:1-12. doi: 10. 1016/j.gene.2010.02.011 PMID: 20193749
9. Li JB, Luan YS (2014) Molecular cloning and characterization of a pathogen-induced WRKY transcription factor gene from late blight resistant tomato varieties Solanum pimpinellifolium L3708. Physiol Mol Plant Pathol 87:25-31.
10. Rismani-Yazdi H, Haznedaroglu BZ, Bibby K, Peccia J (2011) Transcriptome sequencing and annotation of the microalgae Dunaliella tertiolecta: Pathway description and gene discovery for production of next-generation biofuels. BMC Genom 12:148-164.
11. Kim S, Kim MJ, Jung MG, Lee S, Baek YS, Kang SH, et al. (2013) De novo transcriptome analysis of an Arctic microalga, Chlamydomonas sp. Genes Genom 35: 215-223.
12. Zheng MG, Tian JH, Yang GP, Zheng L, Chen GG, Chen JL, et al. (2013) Transcriptome sequencing, annotation and expression analysis of Nannochloropsis sp. at different growth phases. Gene 523: 117-121. doi: 10.1016/j.gene.2013.04.005 PMID: 23603020
13. Yang SH, Guarnieri MT, Smolinski S, Ghirardi M, Pienkos PT(2013) De novo transcriptomic analysis of hydrogen production in the green alga Chlamydomonas moewusiithrough RNA-Seq. Biotech for Bio-fuel 6:118-134.
14. Wang L, Feng Z, Wang X, Zhang X (2010) DEGseq: an R package for identifying differentially expressed genes from RNA-seq data. Bioinform 26:136-138.
15. Gao ZQ, Meng CX, Chen YC, Ahmed F, Mangott A, Schenk PM, et al. (2015) Comparing of astaxanthin accumulation and biosynthesis gene expression of three Haematococcus strains upon salinity stress. J App phycol 27:1853-1860.
16. Courchesne NMD, Parisien A, Wang B, Lan CQ(2009) Enhancement of lipid production using biochemical, genetic and transcription factor engineering approaches. J Biotech 141: 31-41.
17. Ciftci-Yilmaz S, Mittler R (2008) The zinc finger network of plants. Cell Mol Life Sci. 65, 1150-1160 doi: 10.1007/s00018-007-7473-4 PMID: 18193167
18. Gutterson N, ReuberTL (2004) Regulation of disease resistance pathways by AP2/ERF transcription factors. Curr Opin Plant Bio 7: 465-471.
19. Mizoi J, Shinozaki K, Yamaguchi-Shinozaki K (2012) AP2/ERF family transcription factors in plant abiotic stress responses. Biochimica et Biophysica Acta (BBA)-Gene Regul Mech, 1819: 86-96.
20. Zhu ZG, Shi JL, Xu WR, Li HE, He MY, Xu Y, et al. (2013) Three ERF transcription factors from Chinese wild grapevine Vitispseudoreticulata participate in different biotic and abiotic stress-responsive pathways. J Plant Physiol 170: 923-933. doi: 10.1016/j.jplph.2013.01.017 PMID: 23541511
21. Li HL, Zhang LB, Guo D, Li CZ, Peng SQ (2012) Identification and expression profiles of the WRKY transcription factorfamily in Ricinus communis. Gene 503: 248-253. doi: 10.1016/j.gene.2012.04.069 PMID: 22579867
22. Riano-Pachon DM, Correa LGG, Trejos-Espinosa R, Mueller-Roeber B (2008) Green transcription factors: a Chlamydomonas overview. Genet 179: 31-39.
23. Aoyagi LN, Lopes-Caitar VS, de Carvalho MCCG, Darben LM, Polizel-Podanosqui A, Kuwahara MK, et al. (2014) Genomic and transcriptomic characterization of the transcription factor family R2R3-MYB in soybean and its involvement in the resistance responses to Phakopsora pachyrhizi. Plant Sci 229: 32-42. doi: 10.1016/j.plantsci.2014.08.005 PMID: 25443831
24. Courchesne NMD, Parisien A, Wang B, Lan CQ. (2009) Enhancement of lipid production using biochemical, genetic and transcription factor engineering approaches. Journal of Biotechnology 141:31-41. doi: 10.1016/j.jbiotec.2009.02.018 PMID: 19428728
25. Collén J, Hervé C, Guisle-Marsollier I, Léger JJ, Boyen C (2006) Expression profiling of Chondrus cris-pus (Rhodophyta) after exposure to methyl jasmonate. J Exp Bot, 57: 3869-3881. PMID: 17043086
26. Lemoine Y, Schoefs B (2010) Secondary ketocarotenoidastaxanthin biosynthesis in algae: a multifunctional response to stress. Photosynth Res 106:155-177. doi: 10.1007/s11120-010-9583-3 PMID: 20706789
27. Nowicka B, Strzalka W, Strzalka K(2009) New transgenic line of Arabidopsis thaliana with partly disabled zeaxanthin epoxidase activity displays changed carotenoid composition, xanthophyll cycle activity and non-photochemical quenching kinetics. J Plant Physiol 166:1045-1056. doi: 10.1016/j.jplph. 2008.12.010 PMID: 19278749
28. Sandmann G (2009) Evolution of carotene desaturation: The complication of a simple pathway. Arch Biochem Biophys 483:169-174. doi: 10.1016/j.abb.2008.10.004 PMID: 18948076
29. Ohmiya A (2013) Qualitative and quantitative control of carotenoid accumulation in flower petals. Scia Horticul 163:10-19.
30. Galpaz N, Burger Y, Lavee T, Tzuri G, Sherman A, Melamed T, et al. (2013) Genetic and chemical characterization of an EMS induced mutation in Cucumis melo CRTISO gene. Arch Biochem Bioph, 539:117-125.
31. Sun Z, Cunningham FX, Gantt E (1998) Differential expression of two isopentenyl pyrophosphate isom-erases and enhanced carotenoid accumulation in a unicellular chlorophyte. Proc Natl Acad Sci USA 95:11482-11488. PMID: 9736763
32. Steinbrenner J, Linden H (2003) Light induction of carotenoid biosynthesis genes in the green alga Haematococcus pluvialis: regulation by photosynthetic redox control. Plant Mol Biol 52: 343-356. PMID: 12856941
33. Steinbrenner J, Sandmann G (2006) Transformation of the Green Alga Haematococcus pluvialis with a Phytoene Desaturase for Accelerated Astaxanthin Biosynthesis. Appl Environ Microb 72: 7477-7484
34. Vidhyavathi R, Venkatachalam L, Sarada R, Ravishankar GA (2008) Regulation of carotenoid biosyn-thetic genes expression and carotenoid accumulation in the green alga Haematococcus pluvialis under nutrient stress conditions. J Exp Bot 59:1409-1418. doi: 10.1093/jxb/ern048 PMID: 18343887
35. Ng P, Wei CL, Sung WK, Chiu KP, Lipovich L, Ang CC, et al. (2005) Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation. Nat Meth 2:105-111.
36. Rice P, Longdon I and Bleasby A (2000) EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet 16:276-277. PMID: 10827456
37. Chen Z, Xue CH, Zhu S, Zhou FF, Xue FBL, Liu GP, et al. (2005) GoPipe: streamlined gene ontology annotation for batch anonymous sequences with statistics. Prog Biochem and Biophy, 32:187-191.
38. Kanehisa M, Goto S, Furumichi M, Tanabe M, Hirakawa M (2010) KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res 38: 355-360.
39. Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B (2008) Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Meth 5: 621-628.