Using the PhenX toolkit to add standard measures to a study

Current Protocols in Human Genetics

Volumn 2015, Issue , 2015, Pages 1.21.1-1.21.17

  Hendershot, Tabitha ^a   Pan, Huaqin ^a   Haines, Jonathan ^b   Harlan, William R ^c   Marazita, Mary L ^d   McCarty, Catherine A ^e   Ramos, Erin M ^f   Hamilton, Carol M ^a  

^a RTI INTERNATIONAL   (United States)

^b CASE WESTERN RESERVE UNIVERSITY   (United States)

^c NATIONAL INSTITUTES OF HEALTH   (United States)

^d UNIVERSITY OF PITTSBURGH   (United States)

^e ESSENTIA INSTITUTE OF RURAL HEALTH   (United States)

^f NATIONAL HUMAN GENOME RESEARCH INSTITUTE   (United States)

Author keywords

Environmental exposures; Epidemiology; Genome wide association studies (GWAS); PhenX; phenotypes; Research; standard measures

Indexed keywords

ACCESS TO INFORMATION; ARTICLE; CLINICAL PROTOCOL; ENVIRONMENTAL EXPOSURE; GENETIC ANALYSIS; GENETIC ASSOCIATION; GENETIC DATABASE; GENOTYPE ENVIRONMENT INTERACTION; HUMAN; INFORMATION PROCESSING; ONLINE SYSTEM; PHENOTYPE; PRIORITY JOURNAL; TRANSLATIONAL RESEARCH; COMPUTER INTERFACE; INTERNET; SOFTWARE; WEB BROWSER;

ENVIRONMENTAL EXPOSURE; HUMANS; INTERNET; PHENOTYPE; SOFTWARE; USER-COMPUTER INTERFACE; WEB BROWSER;

EID: 84949229950     PISSN: 19348266     EISSN: 19348258     Source Type: Journal    
DOI: 10.1002/0471142905.hg0121s86     Document Type: Article

References (6)

1. Bennett, S.N., Caporaso, N., Fitzpatrick, A.L., Agrawal, A., Barnes, K., Boyd, H.A., Cornelis, M.C., Hansel, N.N., Heis, G., Heit, J.A., Kang, J.H., Kittner, S.J., Kraft, P., Lowe, W., Marazita, M.L., Monroe, K.R., Pasquale, L.R., Ramos, E.M., van Dam, R.M., Udren, J., and Williams, K.; for the GENEVA Consortium. 2011. Phenotype harmonization and cross-study collaboration in GWAS consortia: The GENEVA experience. Genet. Epidemiol. 35:159-173.
2. Conway, K.P., Vullo, G.C., Kennedy, A.P., Finger, M.S., Arpana, A., Bjork, J.M., Farrer, L.A., Hancock, D.B., Hussong, A., Wakim, P., Huggins, W., Hendershot, T., Nettles, D.S., Pratt, J., MaieseD., Junkins, H.A., Ramos, E.M., Strader, L.C., Hamilton, C.M., and Sher, K.J. 2014. Data compatibility in the addiction sciences: An examination of measure commonality. Drug Alcohol Depend. 141:153-158.
3. Maiese, D.R., Hendershot, T.P., Strader, L.C., Wagener, D.K., Hammond, J.A., Huggins, W., Kwok, R.K., Hancock, D.B., Whitehead, N.S., Nettles, D.S., Pratt, J.G., Scott, M.S., Conway, K.P., Junkins, H.A., Ramos, E.M., and Hamilton, C.M. 2013. PhenX-Establishing a Consensus Process to Select Common Measures for Collaborative Research. RTI Press publication no. MR-0027-1310. RTI Press, Research Triangle Park, N.C.
4. Mailman, M.D., Feolo, M., Jin, Y., Kimura, M., Tryka, K., Bagoutdinov, R., Hao, L., Kiang, A., Paschall, J., Phan, L., Popova, N., Pretel, S., Ziyabari, L., Lee, M., Shao, Y., Wang, Z.Y., Sirotkin, K., Ward, M., Kholodov, M., Zbicz, K., Beck, J., Kimelman, M., Shevelev, S., Preuss, D., Yaschenko, E., Graeff, A., Ostell, J., and Sherry, S.T. 2007. The NCBI dbGaP database of genotypes and phenotypes. Nat. Genet. 39:1181-1186.
5. McCarty, C.A., Huggins, W., Aiello, A.E., Bilder, R.M., Hariri, A., Jernigan, T.L., Newman, E., Sanghera, D.K., Strauman, T.J., Zeng, Y., Ramos, E.M., and Junkins, H.A. 2014. PhenX RISING: Real world implementation and sharing of PhenX measures. BMC Med. Genom. 7:16 (doi: 10.1186/1755-8794-7-16.
6. Stover, P.J., Harlan, W.R., Hammond, J.A., Hendershot, T., and Hamilton, C.M. 2010. PhenX: A toolkit for interdisciplinary genetics research. Curr. Opin. Lipidol. 21:136-140.