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Volumn 12, Issue 1, 2015, Pages

Performance of single and multi-atlas based automated landmarking methods compared to expert annotations in volumetric microCT datasets of mouse mandibles

Author keywords

Automated landmarking; Geometric morphometrics; Mandible; MicroCT; Multi atlas segmentation

Indexed keywords


EID: 84949212355     PISSN: None     EISSN: 17429994     Source Type: Journal    
DOI: 10.1186/s12983-015-0127-8     Document Type: Article
Times cited : (11)

References (44)
  • 2
    • 76749151467 scopus 로고    scopus 로고
    • Maternal Ethanol Consumption Alters the Epigenotype and the Phenotype of Offspring in a Mouse Model
    • Kaminen-Ahola N, Ahola A, Maga M, Mallitt K-A, Fahey P, Cox TC, et al. Maternal Ethanol Consumption Alters the Epigenotype and the Phenotype of Offspring in a Mouse Model. PLoS Genet. 2010;6:e1000811.
    • (2010) PLoS Genet , vol.6
    • Kaminen-Ahola, N.1    Ahola, A.2    Maga, M.3    Mallitt, K.-A.4    Fahey, P.5    Cox, T.C.6
  • 4
    • 84926479433 scopus 로고    scopus 로고
    • Quantitative trait loci affecting the 3D skull shape and size in mouse and prioritization of candidate genes in-silico
    • Maga AM, Navarro N, Cunningham ML, Cox TC. Quantitative trait loci affecting the 3D skull shape and size in mouse and prioritization of candidate genes in-silico. Craniofacial Biol. 2015;6:92.
    • (2015) Craniofacial Biol , vol.6 , pp. 92
    • Maga, A.M.1    Navarro, N.2    Cunningham, M.L.3    Cox, T.C.4
  • 5
    • 84857433906 scopus 로고    scopus 로고
    • FGF/FGFR Signaling Coordinates Skull Development by Modulating Magnitude of Morphological Integration: Evidence from Apert Syndrome Mouse Models
    • Martinez-Abadias N, Heuze Y, Wang Y, Jabs EW, Aldridge K, Richtsmeier JT. FGF/FGFR Signaling Coordinates Skull Development by Modulating Magnitude of Morphological Integration: Evidence from Apert Syndrome Mouse Models. PLoS One. 2011;6.
    • (2011) PLoS One. , vol.6
    • Martinez-Abadias, N.1    Heuze, Y.2    Wang, Y.3    Jabs, E.W.4    Aldridge, K.5    Richtsmeier, J.T.6
  • 8
    • 84897079554 scopus 로고    scopus 로고
    • Embryonic craniofacial bone volume and bone mineral density in Fgfr2+/P253R and nonmutant mice
    • Percival CJ, Huang Y, Jabs EW, Li R, Richtsmeier JT. Embryonic craniofacial bone volume and bone mineral density in Fgfr2+/P253R and nonmutant mice. Dev Dyn. 2014;243:541-51.
    • (2014) Dev Dyn , vol.243 , pp. 541-551
    • Percival, C.J.1    Huang, Y.2    Jabs, E.W.3    Li, R.4    Richtsmeier, J.T.5
  • 9
    • 84876693037 scopus 로고    scopus 로고
    • Hand in glove: brain and skull in development and dysmorphogenesis
    • Richtsmeier JT, Flaherty K. Hand in glove: brain and skull in development and dysmorphogenesis. Acta Neuropathol (Berl). 2013;125:469-89.
    • (2013) Acta Neuropathol (Berl) , vol.125 , pp. 469-489
    • Richtsmeier, J.T.1    Flaherty, K.2
  • 11
    • 0026050115 scopus 로고
    • Euclidean Distance Matrix Analysis-a Coordinate-Free Approach for Comparing Biological Shapes Using Landmark Data
    • Lele S, Richtsmeier J. Euclidean Distance Matrix Analysis-a Coordinate-Free Approach for Comparing Biological Shapes Using Landmark Data. Am J Phys Anthropol. 1991;86:415-27.
    • (1991) Am J Phys Anthropol , vol.86 , pp. 415-427
    • Lele, S.1    Richtsmeier, J.2
  • 12
    • 0035101784 scopus 로고    scopus 로고
    • Genetic Architecture of Mandible Shape in Mice: Effects of Quantitative Trait Loci Analyzed by Geometric Morphometrics
    • Klingenberg CP, Leamy LJ, Routman EJ, Cheverud JM. Genetic Architecture of Mandible Shape in Mice: Effects of Quantitative Trait Loci Analyzed by Geometric Morphometrics. Genetics. 2001;157:785-802.
    • (2001) Genetics , vol.157 , pp. 785-802
    • Klingenberg, C.P.1    Leamy, L.J.2    Routman, E.J.3    Cheverud, J.M.4
  • 13
    • 56549110640 scopus 로고    scopus 로고
    • A search for quantitative trait loci exhibiting imprinting effects on mouse mandible size and shape
    • Leamy LJ, Klingenberg CP, Sherratt E, Wolf JB, Cheverud JM. A search for quantitative trait loci exhibiting imprinting effects on mouse mandible size and shape. Heredity. 2008;101:518-26.
    • (2008) Heredity , vol.101 , pp. 518-526
    • Leamy, L.J.1    Klingenberg, C.P.2    Sherratt, E.3    Wolf, J.B.4    Cheverud, J.M.5
  • 14
    • 84912531541 scopus 로고    scopus 로고
    • Use of a natural hybrid zone for genomewide association mapping of craniofacial traits in the house mouse
    • Pallares LF, Harr B, Turner LM, Tautz D. Use of a natural hybrid zone for genomewide association mapping of craniofacial traits in the house mouse. Mol Ecol. 2014;23:5756-70.
    • (2014) Mol Ecol , vol.23 , pp. 5756-5770
    • Pallares, L.F.1    Harr, B.2    Turner, L.M.3    Tautz, D.4
  • 19
    • 84944188557 scopus 로고    scopus 로고
    • Automated Detection of 3D Landmarks for the Elimination of Non-Biological Variation in Geometric Morphometric Analyses
    • Aneja D, Vora SR, Camci E, Shapiro L, Cox T. Automated Detection of 3D Landmarks for the Elimination of Non-Biological Variation in Geometric Morphometric Analyses. Proc IEEE Int Symp Comput Based MedSyst 2015. 2015:78-83.
    • (2015) Proc IEEE Int Symp Comput Based MedSyst , vol.2015 , pp. 78-83
    • Aneja, D.1    Vora, S.R.2    Camci, E.3    Shapiro, L.4    Cox, T.5
  • 22
    • 84055184779 scopus 로고    scopus 로고
    • A Landmark-free Framework for the Detection and Description of Shape Differences in Embryos
    • Rolfe S, Shapiro L, Cox T, Maga A, Cox L. A Landmark-free Framework for the Detection and Description of Shape Differences in Embryos. Conf Proc. 2011;2011:5153-6.
    • (2011) Conf Proc , vol.2011 , pp. 5153-5156
    • Rolfe, S.1    Shapiro, L.2    Cox, T.3    Maga, A.4    Cox, L.5
  • 23
    • 34447135106 scopus 로고    scopus 로고
    • Computational mouse atlases and their application to automatic assessment of craniofacial dysmorphology caused by the Crouzon mutation Fgfr2C342Y
    • Olafsdottir H, Darvann TA, Hermann NV, Oubel E, BK E l, Frangi AF, et al. Computational mouse atlases and their application to automatic assessment of craniofacial dysmorphology caused by the Crouzon mutation Fgfr2C342Y. J Anat. 2007;211:37-52.
    • (2007) J Anat , vol.211 , pp. 37-52
    • Olafsdottir, H.1    Darvann, T.A.2    Hermann, N.V.3    Oubel, E.4    Frangi, A.F.5
  • 26
    • 84864009009 scopus 로고    scopus 로고
    • Validation of DRAMMS among 12 Popular Methods in Cross-Subject Cardiac MRI Registration
    • WBIR. Springer
    • Ou Y, Ye DH, Pohl KM, Davatzikos C. Validation of DRAMMS among 12 Popular Methods in Cross-Subject Cardiac MRI Registration. In: WBIR. Springer. 2012. p. 209-19.
    • (2012) , pp. 209-219
    • Ou, Y.1    Ye, D.H.2    Pohl, K.M.3    Davatzikos, C.4
  • 27
    • 84907749690 scopus 로고    scopus 로고
    • Comparative evaluation of registration algorithms in different brain databases with varying difficulty: results and insights
    • Ou Y, Akbari H, Bilello M, Da X, Davatzikos C. Comparative evaluation of registration algorithms in different brain databases with varying difficulty: results and insights. Med Imaging IEEE Trans On. 2014;33:2039-65.
    • (2014) Med Imaging IEEE Trans On , vol.33 , pp. 2039-2065
    • Ou, Y.1    Akbari, H.2    Bilello, M.3    Da, X.4    Davatzikos, C.5
  • 28
    • 84929653305 scopus 로고    scopus 로고
    • Deformable registration for quantifying longitudinal tumor changes during neoadjuvant chemotherapy
    • Ou Y, Weinstein SP, Conant EF, Englander S, Da X, Gaonkar B, et al. Deformable registration for quantifying longitudinal tumor changes during neoadjuvant chemotherapy. Magn Reson Med. 2015;73:2343-56.
    • (2015) Magn Reson Med , vol.73 , pp. 2343-2356
    • Ou, Y.1    Weinstein, S.P.2    Conant, E.F.3    Englander, S.4    Da, X.5    Gaonkar, B.6
  • 29
    • 84861852759 scopus 로고    scopus 로고
    • Formulating spatially varying performance in the statistical fusion framework
    • Asman AJ, Landman BA. Formulating spatially varying performance in the statistical fusion framework. IEEE Trans Med Imaging. 2012;31:1326-36.
    • (2012) IEEE Trans Med Imaging , vol.31 , pp. 1326-1336
    • Asman, A.J.1    Landman, B.A.2
  • 30
    • 80053499342 scopus 로고    scopus 로고
    • Robust statistical label fusion through COnsensus Level, Labeler Accuracy, and Truth Estimation (COLLATE)
    • Asman AJ, Landman BA. Robust statistical label fusion through COnsensus Level, Labeler Accuracy, and Truth Estimation (COLLATE). IEEE Trans Med Imaging. 2011;30:1779-94.
    • (2011) IEEE Trans Med Imaging , vol.30 , pp. 1779-1794
    • Asman, A.J.1    Landman, B.A.2
  • 31
    • 1942438249 scopus 로고    scopus 로고
    • Simultaneous truth and performance level estimation (STAPLE): an algorithm for the validation of image segmentation
    • Warfield SK, Zou KH, Wells WM. Simultaneous truth and performance level estimation (STAPLE): an algorithm for the validation of image segmentation. Med Imaging IEEE Trans On. 2004;23:903-21.
    • (2004) Med Imaging IEEE Trans On , vol.23 , pp. 903-921
    • Warfield, S.K.1    Zou, K.H.2    Wells, W.M.3
  • 33
    • 84871199133 scopus 로고    scopus 로고
    • Development of the mouse mandible: a model system for complex morphological structures
    • Macholán M, Baird SJE, Munclinger P, Piálek J, editors. Evolution of the House Mouse. Cambridge: Cambridge University Press
    • Klingenberg CP, Navarro N. Development of the mouse mandible: a model system for complex morphological structures. In: Macholán M, Baird SJE, Munclinger P, Piálek J, editors. Evolution of the House Mouse. Cambridge: Cambridge University Press; 2012. p. 135-49.
    • (2012) , pp. 135-149
    • Klingenberg, C.P.1    Navarro, N.2
  • 35
    • 78951494198 scopus 로고    scopus 로고
    • DRAMMS: Deformable registration via attribute matching and mutual-saliency weighting
    • Ou Y, Sotiras A, Paragios N, Davatzikos C. DRAMMS: Deformable registration via attribute matching and mutual-saliency weighting. Med Image Anal. 2011;15:622-39.
    • (2011) Med Image Anal , vol.15 , pp. 622-639
    • Ou, Y.1    Sotiras, A.2    Paragios, N.3    Davatzikos, C.4
  • 36
    • 84930001875 scopus 로고    scopus 로고
    • Ensemble-based medical image labeling via sampling morphological appearance manifolds
    • Theory and Applications. Nagoya, Japan
    • Doshi JJ, Erus G, Ou Y, Davatzikos C. Ensemble-based medical image labeling via sampling morphological appearance manifolds. In: MICCAI Challenge Workshop on Segmentation: Algorithms, Theory and Applications. Nagoya, Japan. 2013.
    • (2013) MICCAI Challenge Workshop on Segmentation: Algorithms
    • Doshi, J.J.1    Erus, G.2    Ou, Y.3    Davatzikos, C.4
  • 37
    • 84937215853 scopus 로고    scopus 로고
    • Multi-atlas segmentation of biomedical images: A survey
    • Iglesias JE, Sabuncu MR. Multi-atlas segmentation of biomedical images: A survey. Med Image Anal. 2015;24:205-19.
    • (2015) Med Image Anal , vol.24 , pp. 205-219
    • Iglesias, J.E.1    Sabuncu, M.R.2
  • 40
    • 0029091295 scopus 로고
    • Euclidean distance matrix analysis: confidence intervals for form and growth differences
    • Lele S, Richtsmeier JT. Euclidean distance matrix analysis: confidence intervals for form and growth differences. Am J Phys Anthropol. 1995;98:73-86.
    • (1995) Am J Phys Anthropol , vol.98 , pp. 73-86
    • Lele, S.1    Richtsmeier, J.T.2
  • 41
    • 0000142472 scopus 로고
    • Procrustes Methods in the Statistical Analysis of Shape
    • Goodall C. Procrustes Methods in the Statistical Analysis of Shape. J R Stat Soc Ser B Methodol. 1991;53:285-339.
    • (1991) J R Stat Soc Ser B Methodol , vol.53 , pp. 285-339
    • Goodall, C.1
  • 42
    • 84914179053 scopus 로고    scopus 로고
    • R: A Language and Environment for Statistical Computing
    • Vienna, Austria: R Foundation for Statistical Computing
    • R Core Team. R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing; 2014.
    • (2014)
  • 43
    • 84949283603 scopus 로고    scopus 로고
    • Shapes: Statistical Shape Analysis. R Package Version 1.1-10
    • Dryden IL. Shapes: Statistical Shape Analysis. R Package Version 1.1-10. 2014.
    • (2014)
    • Dryden, I.L.1
  • 44
    • 84879978609 scopus 로고    scopus 로고
    • Morpho: Calculations and Visualisations Related to Geometric Morphometrics.
    • Schlager S. Morpho: Calculations and Visualisations Related to Geometric Morphometrics. 2014.
    • (2014)
    • Schlager, S.1


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