Environmental surveillance of genogroup i and II noroviruses in Shandong Province, China in 2013

Scientific Reports

Volumn 5, Issue , 2015, Pages

  Tao, Zexin ^a,b   Xu, Minglei ^c   Lin, Xiaojuan ^a,b   Wang, Haiyan ^a,b   Song, Lizhi ^a,b   Wang, Suting ^a,b   Zhou, Nan ^a   Zhang, Dongfeng ^c   Xu, Aiqiang ^a,b  

^a SHANDONG UNIVERSITY   (China)

^b Jinan Prefecture Center for Disease Control and Prevention   (China)

^c QINGDAO UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

SEWAGE; VIRUS RNA;

CALICIVIRIDAE INFECTIONS; CHINA; CLASSIFICATION; DNA SEQUENCE; ENVIRONMENTAL MONITORING; GENETIC RECOMBINATION; GENETIC VARIATION; GENETICS; GENOTYPE; MICROBIOLOGY; MOLECULAR GENETICS; MOLECULAR TYPING; NOROVIRUS; NUCLEOTIDE SEQUENCE; PHYLOGENY; SEQUENCE ALIGNMENT; SEWAGE; VIROLOGY; VIRUS GENE;

BASE SEQUENCE; CALICIVIRIDAE INFECTIONS; CHINA; ENVIRONMENTAL MICROBIOLOGY; ENVIRONMENTAL MONITORING; GENES, VIRAL; GENETIC VARIATION; GENOTYPE; MOLECULAR SEQUENCE DATA; MOLECULAR TYPING; NOROVIRUS; PHYLOGENY; RECOMBINATION, GENETIC; RNA, VIRAL; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEWAGE;

EID: 84948706161     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep17444     Document Type: Article

References (40)

1. Green, K. Y. In Fields virology, 6th edn, Vol. 2 (eds Knipe, D. M. et al.) Ch. 20, 582-604 (Lippincott Williams & Wilkins, 2013).
2. Zheng, D. P. et al. Norovirus classification and proposed strain nomenclature. Virology 346, 312-323 (2006).
3. Bok, K. et al. Evolutionary dynamics of GII.4 noroviruses over a 34-year period. J. Virol. 83, 11890-11901 (2009).
4. Siebenga, J. J. et al. Phylodynamic reconstruction reveals norovirus GII.4 epidemic expansions and their molecular determinants. PLoS Pathogens 6, e1000884 (2010)
5. Siebenga, J. J. et al. Norovirus illness is a global problem: emergence and spread of norovirus GII.4 variants, 2001-2007. J. Infect. Dis. 200, 802-812 (2009).
6. Lodder, W. J. et al. Molecular detection of Norwalk-like caliciviruses in sewage. Appl. Environ. Microbiol. 65, 5624-5627 (1999).
7. Iwai, M. et al. Continuous presence of noroviruses and sapoviruses in raw sewage reflects infections among inhabitants of Toyama, Japan (2006 to 2008). Appl. Environ. Microbiol. 75, 1264-1270 (2009).
8. Tan, D. et al. High prevalence and genetic diversity of noroviruses among children with sporadic acute gastroenteritis in Nanning City, China, 2010-2011. J. Med. Virol. 87, 498-503 (2015)
9. Lu, Q. B. et al. An increasing prevalence of recombinant GII norovirus in pediatric patients with diarrhea during 2010-2013 in China. Infect. Genet. Evol. 16, 48-52 (2015).
10. Yu, Y., Yan, S., Li, B., Pan, Y. & Wang, Y. Genetic diversity and distribution of human norovirus in China (1999-2011). Biomed. Res. Int. 2014, 196169 (2014).
11. He, X. Q. et al. One-year monthly survey of rotavirus, astrovirus and norovirus in three sewage treatment plants (STPs) in Beijing, China and associated health risk assessment. Water Sci. Technol. 64, 1202-1210 (2011).
12. Skraber, S. et al. Concentration and diversity of noroviruses detected in Luxembourg wastewaters in 2008-2009. Appl. Environ. Microbiol. 77, 5566-5568 (2011).
13. Grøndahl-Rosado, R. C., Yarovitsyna, E., Trettenes, E., Myrmel, M. & Robertson, L. J. A one year study on the concentrations of norovirus and enteric adenoviruses in wastewater and a surface drinking water source in Norway. Food Environ. Virol. 6, 232-245 (2014).
14. Tao, Z. et al. Cocirculation of two transmission lineages of echovirus 6 in Jinan, China, as revealed by environmental surveillance and sequence analysis. Appl. Environ. Microbiol. 77, 3786-3792 (2011).
15. Tao, Z. et al. Intercity spread of echovirus 6 in Shandong Province, China: application of environmental surveillance in tracing circulating enteroviruses. Appl Environ Microbiol. 78, 6946-6953 (2012).
16. Wang, H. et al. Environmental surveillance of human enteroviruses in Shandong Province, China, 2008-2012: serotypes, temporal fluctuation and molecular epidemiology. Appl Environ Microbiol. 80, 4683-4691 (2014).
17. WHO. Guidelines for environmental surveillance of poliovirus circulation. (World Health Organization, Geneva, 2003).
18. Hovi, T. et al. Role of environmental poliovirus surveillance in global polio eradication and beyond. Epidemiol. Infect. 140, 1-13 (2012).
19. Bruggink, L. D., Oluwatoyin, O., Sameer, R., Witlox, K. J. & Marshall, J. A. Molecular and epidemiological features of gastroenteritis outbreaks involving genogroup I norovirus in Victoria, Australia, 2002-2010. J. Med. Virol. 84, 1437-1448 (2012).
20. Leshem, E. et al. Genotype GI.6 norovirus, United States, 2010-2012. Emerg. Infect. Dis. 19, 1317-1320 (2013).
21. Lodder, W. J. & de Roda Husman, A. M. Presence of noroviruses and other enteric viruses in sewage and surface waters in The Netherlands. Appl. Environ. Microbiol. 71, 1453-1461 (2005).
22. Skraber, S. et al. Concentration and diversity of noroviruses detected in Luxembourg wastewaters in 2008-2009. Appl. Environ. Microbiol. 77, 5566-5568 (2011).
23. La Rosa, G. et al. Molecular identification and genetic analysis of Norovirus genogroups I and II in water environments: comparative analysis of different reverse transcription-PCR assays. Appl. Environ. Microbiol. 73, 4152-4161 (2007).
24. Huhti, L. et al. Genetic analyses of norovirus GII.4 variants in Finnish children from 1998 to 2013. Infect. Genet. Evol. 26, 65-71 (2014).
25. Lee, C. & Kim, S. J. The genetic diversity of human noroviruses detected in river water in Korea. Water Res. 42, 4477-4484 (2008).
26. Nenonen, N. P., Hannoun, C., Larsson, C. U. & Bergström, T. Marked genomic diversity of norovirus genogroup I strains in a waterborne outbreak. Appl. Environ. Microbiol. 78, 1846-1852 (2012).
27. Oluwatoyin, J. M., Adeyemi, A. O., Famurewa, O., Svensson, L. & Nordgren, J. Molecular epidemiology of rotavirus and norovirus in Ile-Ife, Nigeria: high prevalence of G12P[8] rotavirus strains and detection of a rare norovirus genotype. J. Med. Virol. 84, 1489-1496 (2012).
28. Kiulia, N. M., Mans, J., Mwenda, J. M. & Taylor, M. B. Norovirus GII.17 predominates in selected surface water sources in Kenya. Food Environ. Virol. 6, 221-231 (2014).
29. Ngaosuwankul, N. et al. Detection and characterization of enteric viruses in flood water from the 2011 Thai flood. Jpn. J. Infect. Dis. 66, 398-403 (2013).
30. Aw, T. G. & Gin, K. Y. Environmental surveillance and molecular characterization of human enteric viruses in tropical urban wastewaters. J. Appl. Microbiol. 109, 716-730 (2010).
31. Murray, T. Y., Mans, J. & Taylor, M. B. Human calicivirus diversity in wastewater in South Africa. J. Appl. Microbiol. 114, 1843-1853 (2013).
32. Kaplan, N. M. et al. Detection and molecular characterisation of rotavirus and norovirus infections in Jordanian children with acute gastroenteritis. Arch. Virol. 156, 1477-1480 (2011).
33. Kamel, A. H. et al. Evidence of the co-circulation of enteric viruses in sewage and in the population of Greater Cairo. J. Appl. Microbiol. 108, 1620-1629 (2010).
34. Vidal, R. et al. Novel recombinant norovirus causing outbreaks of gastroenteritis in Santiago, Chile. J. Clin. Microbiol. 44, 2271-2275 (2006).
35. Bull, R. A. et al. Norovirus recombination in ORF1/ORF2 overlap. Emerg. Infect. Dis. 11, 1079-1085 (2005).
36. Fajardo, Á. et al. Phylogenetic analyses of Norovirus strains detected in Uruguay reveal the circulation of the novel GII.P7/GII.6 recombinant variant. Infect. Genet. Evol. 28, 328-332 (2014).
37. Kojima, S. et al. Genogroup-specific PCR primers for detection of Norwalk-like viruses. J. Virol. Methods 100, 107-114 (2002).
38. Kroneman, A. et al. An automated genotyping tool for enteroviruses and noroviruses. J. Clin. Virol. 51, 121-125 (2011).
39. Hall, T. A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids. Symp. Ser. 41, 95-98 (1999).
40. Tamura, K., Dudley, J., Nei, M. & Kumar, S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24, 1596-1599 (2007).