A paper and plastic device for the combined isothermal amplification and lateral flow detection of Plasmodium DNA

Malaria Journal

Volumn 14, Issue 1, 2015, Pages

  Cordray, Michael S ^a   Richards Kortum, Rebecca R ^a  

^a Rice University   (United States)

Author keywords

Nucleic acid test; Paper microfluidics; Recombinase polymerase amplification

Indexed keywords

DNA; PLASTIC; PROTOZOAL DNA; RIBOSOME DNA; RNA 18S;

AMPLICON; ARTICLE; CONTROLLED STUDY; COST; DNA SEQUENCE; GEL ELECTROPHORESIS; LATERAL FLOW DETECTION; MOLECULAR DIAGNOSTICS; NONHUMAN; NUCLEIC ACID AMPLIFICATION; PAPER; PLASMODIUM; RECOMBINASE POLYMERASE AMPLIFICATION; DEVICES; ECONOMICS; EVALUATION STUDY; GENETICS; HUMAN; MALARIA; MOLECULAR DIAGNOSIS; PROCEDURES; TIME FACTOR;

COSTS AND COST ANALYSIS; DNA, PROTOZOAN; DNA, RIBOSOMAL; EQUIPMENT AND SUPPLIES; HUMANS; MALARIA; MOLECULAR DIAGNOSTIC TECHNIQUES; NUCLEIC ACID AMPLIFICATION TECHNIQUES; PAPER; PLASMODIUM; PLASTICS; RNA, RIBOSOMAL, 18S; TIME FACTORS;

EID: 84948413042     PISSN: None     EISSN: 14752875     Source Type: Journal    
DOI: 10.1186/s12936-015-0995-6     Document Type: Article

References (35)

1. Niemz A, Ferguson TM, Boyle DS. Point-of-care nucleic acid testing for infectious diseases. Trends Biotechnol. 2011;29:240-50.
2. Weigl B, Domingo G, LaBarre P, Gerlach J. Towards non-and minimally instrumented, microfluidics-based diagnostic devices. Lab Chip. 2008;8:1999-2014.
3. Khairnar K, Martin D, Lau R, Ralevski F, Pillai DR. Multiplex real-time quantitative PCR, microscopy and rapid diagnostic immuno-chromatographic tests for the detection of Plasmodium spp: performance, limit of detection analysis and quality assurance. Malar J. 2009;8:284.
4. Johnston SP, Pieniazek NJ, Xayavong MV, Slemenda SB, Wilkins PP, da Silva AJ. PCR as a confirmatory technique for laboratory diagnosis of malaria. J Clin Microbiol. 2006;44:1087-9.
5. Hänscheid T, Grobusch MP. How useful is PCR in the diagnosis of malaria? Trends Parasitol. 2002;18:395-8.
6. Kuhn H, Demidov VV, Frank-Kamenetskii MD. Rolling-circle amplification under topological constraints. Nucleic Acids Res. 2002;30:574-80.
7. Schweitzer B, Kingsmore S. Combining nucleic acid amplification and detection. Curr Opin Biotechnol. 2001;12:21-7.
8. Notomi T, Okayama H, Masubuchi H, Yonekawa T, Watanabe K, Amino N, et al. Loop-mediated isothermal amplification of DNA. Nucleic Acids Res. 2000;28:E63.
9. Compton J. Nucleic acid sequence-based amplification. Nature. 1991;350:91-2.
10. Euler M, Wang Y, Otto P, Tomaso H, Escudero R, Anda P, et al. Recombinase polymerase amplification assay for rapid detection of Francisella tularensis. J Clin Microbiol. 2012;50:2234-8.
11. Piepenburg O, Williams CH, Stemple DL, Armes NA. DNA detection using recombination proteins. PLoS Biol. 2006;4:e204.
12. Jaroenram W, Owens L. Recombinase polymerase amplification combined with a lateral flow dipstick for discriminating between infectious Penaeus stylirostris densovirus and virus-related sequences in shrimp genome. J Virol Methods. 2014;208:144-51.
13. Mao X, Huang TJ. Microfluidic diagnostics for the developing world. Lab Chip. 2012;12:1412-6.
14. Fu E, Ramsey SA, Kauffman P, Lutz B, Yager P. Transport in two-dimensional paper networks. Microfluid Nanofluidics. 2011;10:29-35.
15. Rohrman BA, Richards-Kortum RR. A paper and plastic device for performing recombinase polymerase amplification of HIV DNA. Lab Chip. 2012;12:3082-8.
16. Cordray MS, Richards-Kortum RR. Emerging nucleic acid-based tests for point-of-care detection of malaria. Am J Trop Med Hyg. 2012;87:223-30.
17. Okell LC, Bousema T, Griffin JT, Ouédraogo AL, Ghani AC, Drakeley CJ. Factors determining the occurrence of submicroscopic malaria infections and their relevance for control. Nat Commun. 2012;3:1237.
18. Okell LC, Ghani AC, Lyons E, Drakeley CJ. Submicroscopic infection in Plasmodium falciparum-endemic populations: a systematic review and meta-analysis. J Infect Dis. 2009;200:1509-17.
19. Cotter C, Sturrock HJ, Hsiang MS, Liu J, Phillips AA, Hwang J, et al. The changing epidemiology of malaria elimination: new strategies for new challenges. Lancet. 2013;382:900-11.
20. Kersting S, Rausch V, Bier FF, von Nickisch-Rosenegk M. Rapid detection of Plasmodium falciparum with isothermal recombinase polymerase amplification and lateral flow analysis. Malar J. 2014;13:99.
21. LaBarre P, Gerlach J, Wilmoth J, Beddoe A, Singleton J, Weigl B. Non-instrumented nucleic acid amplification (NINA): instrument-free molecular malaria diagnostics for low-resource settings. In: Engineering in Medicine and Biology Society (EMBC), 2010 annual international conference of the IEEE; 2010. p. 1097-9.
22. Marangi M, Di Tullio R, Mens P, Martinelli D, Fazio V, Angarano G, et al. Prevalence of Plasmodium spp. in malaria asymptomatic African migrants assessed by nucleic acid sequence based amplification. Malar J. 2009;8:12.
23. Paris DH, Imwong M, Faiz AM, Hasan M, Yunus EB, Silamut K, et al. Loop-mediated isothermal PCR (LAMP) for the diagnosis of falciparum malaria. Am J Trop Med Hyg. 2007;77:972-6.
24. Han ET, Watanabe R, Sattabongkot J, Khuntirat B, Sirichaisinthop J, Iriko H, et al. Detection of four Plasmodium species by genus- and species-specific loop-mediated isothermal amplification for clinical diagnosis. J Clin Microbiol. 2007;45:2521-8.
25. Hsiang MS, Greenhouse B, Rosenthal PJ. Point of care testing for malaria using LAMP, loop mediated isothermal amplification. J Infect Dis. 2014;210:1167-9.
26. Polley SD, González IJ, Mohamed D, Daly R, Bowers K, Watson J, Mewse E, Armstrong M, Gray C, Perkins MD. Clinical evaluation of a loop-mediated amplification kit for diagnosis of imported malaria. J Infect Dis. 2013;208:637-44.
27. Hopkins H, González IJ, Polley SD, Angutoko P, Ategeka J, Asiimwe C, Agaba B, Kyabayinze DJ, Sutherland CJ, Perkins MD. Highly sensitive detection of malaria parasitemia in a malaria-endemic setting: performance of a new loop-mediated isothermal amplification kit in a remote clinic in Uganda. J Infect Dis. 2013;208:645-52.
28. Tahar R, Basco LK. Detection of Plasmodium ovale malaria parasites by species-specific 18S rRNA gene amplification. Mol Cell Probes. 1997;11:389-95.
29. Das A, Holloway B, Collins WE, Shama VP, Ghosh SK, Sinha S, et al. Species-specific 18S rRNA gene amplification for the detection of P. falciparum and P. vivax malaria parasites. Mol Cell Probes. 1995;9:161-5.
30. Green MR, Sambrook J. Molecular cloning: a laboratory manual. New York: Cold Spring Harbor Laboratory Press; 2012.
31. Rohrman BA, Leautaud V, Molyneux E, Richards-Kortum RR. A lateral flow assay for quantitative detection of amplified HIV-1 RNA. PLoS One. 2012;7:e45611.
32. Wongsrichanalai C, Barcus MJ, Muth S, Sutamihardja A, Wernsdorfer WH. A review of malaria diagnostic tools: microscopy and rapid diagnostic test (RDT). Am J Trop Med Hyg. 2007;77:119-27.
33. Taylor BJ, Howell A, Martin KA, Manage DP, Gordy W, Campbell SD, et al. A lab-on-chip for malaria diagnosis and surveillance. Malar J. 2014;13:179.
34. Taylor BJ, Martin KA, Arango E, Agudelo OM, Maestre A, Yanow SK. Real-time PCR detection of Plasmodium directly from whole blood and filter paper samples. Malar J. 2011;10:244.
35. Port JR, Nguetse C, Adukpo S, Velavan TP. A reliable and rapid method for molecular detection of malarial parasites using microwave irradiation and loop mediated isothermal amplification. Malar J. 2014;13:454.