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Volumn 31, Issue 11, 2015, Pages 971-978

The lung microbiome in 2015: A window on chronic lung diseases;Le microbiome pulmonaire en 2015 : Une fenêtre ouverte sur les pathologies pulmonaires chroniques

Author keywords

[No Author keywords available]

Indexed keywords

ASTHMA; CHRONIC DISEASE; CHRONIC OBSTRUCTIVE LUNG DISEASE; CYSTIC FIBROSIS; GENETICS; HIGH THROUGHPUT SEQUENCING; HUMAN; LUNG; LUNG DISEASE; MICROBIAL GENOME; MICROBIOLOGY; MICROFLORA; PHYSIOLOGY;

EID: 84947934983     PISSN: 07670974     EISSN: 19585381     Source Type: Journal    
DOI: 10.1051/medsci/20153111011     Document Type: Review
Times cited : (10)

References (48)
  • 1
    • 79952063902 scopus 로고    scopus 로고
    • Analysis of the lung microbiome in the healthy smoker and in COPD
    • Erb-Downward JR, Thompson DL, Han MK, et al. Analysis of the lung microbiome in the healthy smoker and in COPD. PLoS One 2011; 6: e16384.
    • (2011) PLoS One , vol.6 , pp. e16384
    • Erb-Downward, J.R.1    Thompson, D.L.2    Han, M.K.3
  • 3
    • 84922479758 scopus 로고    scopus 로고
    • Host-microorganism interactions in lung diseases
    • Marsland BJ, Gollwitzer ES. Host-microorganism interactions in lung diseases. Nat Rev Immunol 2014; 14: 827-835.
    • (2014) Nat Rev Immunol , vol.14 , pp. 827-835
    • Marsland, B.J.1    Gollwitzer, E.S.2
  • 4
    • 80053122563 scopus 로고    scopus 로고
    • Topographical continuity of bacterial populations in the healthy human respiratory tract
    • Charlson ES, Bittinger K, Haas AR, et al. Topographical continuity of bacterial populations in the healthy human respiratory tract. Am J Respir Crit Care Med 2011; 184: 957-963.
    • (2011) Am J Respir Crit Care Med , vol.184 , pp. 957-963
    • Charlson, E.S.1    Bittinger, K.2    Haas, A.R.3
  • 5
    • 84877899252 scopus 로고    scopus 로고
    • Comparison of the respiratory microbiome in healthy nonsmokers and smokers
    • Morris A, Beck JM, Schloss PD, et al. Comparison of the respiratory microbiome in healthy nonsmokers and smokers. Am J Respir Crit Care Med 2013; 187: 1067-1075.
    • (2013) Am J Respir Crit Care Med , vol.187 , pp. 1067-1075
    • Morris, A.1    Beck, J.M.2    Schloss, P.D.3
  • 6
  • 8
    • 77649119443 scopus 로고    scopus 로고
    • Disordered microbial communities in asthmatic airways
    • Hilty M, Burke C, Pedro H, et al. Disordered microbial communities in asthmatic airways. PLoS One 2010; 5: e8578.
    • (2010) PLoS One , vol.5 , pp. e8578
    • Hilty, M.1    Burke, C.2    Pedro, H.3
  • 9
    • 84876999613 scopus 로고    scopus 로고
    • Inflammation and airway microbiota during cystic fibrosis pulmonary exacerbations
    • Zemanick ET, Harris JK, Wagner BD, et al. Inflammation and airway microbiota during cystic fibrosis pulmonary exacerbations. PLoS One 2013; 8: e62917.
    • (2013) PLoS One , vol.8 , pp. e62917
    • Zemanick, E.T.1    Harris, J.K.2    Wagner, B.D.3
  • 10
    • 84877918651 scopus 로고    scopus 로고
    • Lung microbiota and bacterial abundance in patients with bronchiectasis when clinically stable and during exacerbation
    • Tunney MM, Einarsson GG, Wei L, et al. Lung microbiota and bacterial abundance in patients with bronchiectasis when clinically stable and during exacerbation. Am J Respir Crit Care Med 2013; 187: 1118-1126.
    • (2013) Am J Respir Crit Care Med , vol.187 , pp. 1118-1126
    • Tunney, M.M.1    Einarsson, G.G.2    Wei, L.3
  • 11
    • 84860484915 scopus 로고    scopus 로고
    • The airway microbiota in cystic fibrosis: A complex fungal and bacterial community implications for therapeutic management
    • Delhaes L, Monchy S, Fréalle E, et al. The airway microbiota in cystic fibrosis: A complex fungal and bacterial community. Implications for therapeutic management. PLoS One 2012; 7: e36313.
    • (2012) PLoS One , vol.7 , pp. e36313
    • Delhaes, L.1    Monchy, S.2    Fréalle, E.3
  • 12
    • 84901610176 scopus 로고    scopus 로고
    • The role of second-generation sequencing in describing the fungal microbiota in the adult cystic fibrosis (cf) airway and its correlation with clinical phenotype
    • Harrison MJ, Twomey KB, McCarthy Y, et al. The role of second-generation sequencing in describing the fungal microbiota in the adult cystic fibrosis (CF) airway and its correlation with clinical phenotype. J Cyst Fibros 2013; 12: S16.
    • (2013) J Cyst Fibros , vol.12 , pp. S16
    • Harrison, M.J.1    Twomey, K.B.2    McCarthy, Y.3
  • 13
    • 84865726240 scopus 로고    scopus 로고
    • Serial analysis of the gut and respiratory microbiome in cystic fibrosis in infancy: Interaction between intestinal and respiratory tracts and impact of nutritional exposures
    • Madan JC, Koestler DC, Stanton BA, et al. Serial analysis of the gut and respiratory microbiome in cystic fibrosis in infancy: interaction between intestinal and respiratory tracts and impact of nutritional exposures. MBio 2012; 3: e00251-e00212.
    • (2012) MBio , vol.3 , pp. e00251-e00252
    • Madan, J.C.1    Koestler, D.C.2    Stanton, B.A.3
  • 14
    • 84893041172 scopus 로고    scopus 로고
    • Clinical insights from metagenomic analysis of cystic fibrosis sputum
    • Lim YW, Evangelista JS 3rd, Schmieder R, et al. Clinical insights from metagenomic analysis of cystic fibrosis sputum. J Clin Microbiol 2014; 52: 425-437.
    • (2014) J Clin Microbiol , vol.52 , pp. 425-437
    • Lim, Y.W.1    Evangelista, J.S.2    Schmieder, R.3
  • 15
    • 84859576702 scopus 로고    scopus 로고
    • Decade-long bacterial community dynamics in cystic fibrosis airways
    • Zhao J, Schloss PD, Kalikin LM, et al. Decade-long bacterial community dynamics in cystic fibrosis airways. Proc Natl Acad Sci USA 2012; 109: 5809-5814.
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. 5809-5814
    • Zhao, J.1    Schloss, P.D.2    Kalikin, L.M.3
  • 16
    • 79955064481 scopus 로고    scopus 로고
    • Partitioning core and satellite taxa from within cystic fibrosis lung bacterial communities
    • Van der Gast CJ, Walker AW, Stressmann FA, et al. Partitioning core and satellite taxa from within cystic fibrosis lung bacterial communities. ISME J 2011; 5: 780-791.
    • (2011) ISME J , vol.5 , pp. 780-791
    • Van Der Gast, C.J.1    Walker, A.W.2    Stressmann, F.A.3
  • 17
    • 77955292433 scopus 로고    scopus 로고
    • Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients
    • Cox MJ, Allgaier M, Taylor B, et al. Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients. PLoS One 2010; 5: e11044.
    • (2010) PLoS One , vol.5 , pp. e11044
    • Cox, M.J.1    Allgaier, M.2    Taylor, B.3
  • 18
    • 84865285995 scopus 로고    scopus 로고
    • Direct sampling of cystic fibrosis lungs indicates that DNA-based analyses of upper-Airway specimens can misrepresent lung microbiota
    • Goddard AF, Staudinger BJ, Dowd SE, et al. Direct sampling of cystic fibrosis lungs indicates that DNA-based analyses of upper-Airway specimens can misrepresent lung microbiota. Proc Natl Acad Sci USA 2012; 109: 13769-13774.
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. 13769-13774
    • Goddard, A.F.1    Staudinger, B.J.2    Dowd, S.E.3
  • 19
    • 84866841728 scopus 로고    scopus 로고
    • The adult cystic fibrosis airway microbiota is stable over time and infection type, and highly resilient to antibiotic treatment of exacerbations
    • Fodor AA, Klem ER, Gilpin DF, et al. The adult cystic fibrosis airway microbiota is stable over time and infection type, and highly resilient to antibiotic treatment of exacerbations. PLoS One 2012; 7: e45001.
    • (2012) PLoS One , vol.7 , pp. e45001
    • Fodor, A.A.1    Klem, E.R.2    Gilpin, D.F.3
  • 20
    • 84867026341 scopus 로고    scopus 로고
    • Analysis of the cystic fibrosis lung microbiota via serial illumina sequencing of bacterial 16s rrna hypervariable regions
    • Maughan H, Wang PW, Diaz Caballero J, et al. Analysis of the cystic fibrosis lung microbiota via serial Illumina sequencing of bacterial 16S rRNA hypervariable regions. PLoS One 2012; 7: e45791.
    • (2012) PLoS One , vol.7 , pp. e45791
    • Maughan, H.1    Wang, P.W.2    Diaz Caballero, J.3
  • 21
    • 77950682572 scopus 로고    scopus 로고
    • The changing microbial epidemiology in cystic fibrosis
    • LiPuma JJ. The changing microbial epidemiology in cystic fibrosis. Clin Microbiol Rev 2010; 23: 299-323.
    • (2010) Clin Microbiol Rev , vol.23 , pp. 299-323
    • LiPuma, J.J.1
  • 22
    • 84879973355 scopus 로고    scopus 로고
    • Analysis of the airway microbiota of healthy individuals and patients with chronic obstructive pulmonary disease by t-rflp and clone sequencing
    • Zakharkina T, Heinzel E, Koczulla RA, et al. Analysis of the airway microbiota of healthy individuals and patients with chronic obstructive pulmonary disease by T-RFLP and clone sequencing. PLoS One 2013; 8: E68302.
    • (2013) PLoS One , vol.8 , pp. E68302
    • Zakharkina, T.1    Heinzel, E.2    Koczulla, R.A.3
  • 23
    • 84887923275 scopus 로고    scopus 로고
    • The effects of airway microbiome on corticosteroid responsiveness in asthma
    • Goleva E, Jackson LP, Harris JK, et al. The effects of airway microbiome on corticosteroid responsiveness in asthma. Am J Respir Crit Care Med 2013; 188: 1193-1201.
    • (2013) Am J Respir Crit Care Med , vol.188 , pp. 1193-1201
    • Goleva, E.1    Jackson, L.P.2    Harris, J.K.3
  • 24
    • 84905217349 scopus 로고    scopus 로고
    • Airway microbiome dynamics in exacerbations of chronic obstructive pulmonary disease
    • Huang JY, Sethi S, Murphy T, et al. Airway microbiome dynamics in exacerbations of chronic obstructive pulmonary disease. J Clin Microbiol 2014; 52: 2813-2823.
    • (2014) J Clin Microbiol , vol.52 , pp. 2813-2823
    • Huang, J.Y.1    Sethi, S.2    Murphy, T.3
  • 25
    • 71049176975 scopus 로고    scopus 로고
    • Bacterial colonisation of lower airways in health and chronic lung disease
    • Weinreich UM, Korsgaard J. Bacterial colonisation of lower airways in health and chronic lung disease. Clin Respir J 2008; 2: 116-122.
    • (2008) Clin Respir J , vol.2 , pp. 116-122
    • Weinreich, U.M.1    Korsgaard, J.2
  • 26
    • 84923930953 scopus 로고    scopus 로고
    • Early respiratory infection is associated with reduced spirometry in children with cystic fibrosis
    • Ramsey KA, Ranganathan S, Park J, et al. Early respiratory infection is associated with reduced spirometry in children with cystic fibrosis. Am J Respir Crit Care Med 2014; 190: 1111-1116.
    • (2014) Am J Respir Crit Care Med , vol.190 , pp. 1111-1116
    • Ramsey, K.A.1    Ranganathan, S.2    Park, J.3
  • 27
    • 84873405282 scopus 로고    scopus 로고
    • Asthma-Associated differences in microbial composition of induced sputum
    • Marri PR, Stern DA, Wright AL, et al. Asthma-Associated differences in microbial composition of induced sputum. J Allergy Clin Immunol 2013; 131: 346-352.
    • (2013) J Allergy Clin Immunol , vol.131 , pp. 346-352
    • Marri, P.R.1    Stern, D.A.2    Wright, A.L.3
  • 28
    • 84878450664 scopus 로고    scopus 로고
    • Interpreting infective microbiota: The importance of an ecological perspective
    • Rogers GB, Hoffman LR, Carroll MP, Bruce KD. Interpreting infective microbiota: The importance of an ecological perspective. Trends Microbiol 2013; 21: 271-276.
    • (2013) Trends Microbiol , vol.21 , pp. 271-276
    • Rogers, G.B.1    Hoffman, L.R.2    Carroll, M.P.3    Bruce, K.D.4
  • 29
    • 77953519935 scopus 로고    scopus 로고
    • Infection as comorbidity of COPD
    • Sethi S. Infection as comorbidity of COPD. Eur Respir J 2010; 35: 1209-1215.
    • (2010) Eur Respir J , vol.35 , pp. 1209-1215
    • Sethi, S.1
  • 30
    • 83655190177 scopus 로고    scopus 로고
    • Cigarette smoke impairs airway epithelial barrier function and cell-cell contact recovery
    • Heijink IH, Brandenurg SM, Postma DS, van Oosterhout AJ. Cigarette smoke impairs airway epithelial barrier function and cell-cell contact recovery. Eur Respir J 2012; 39: 419-428.
    • (2012) Eur Respir J , vol.39 , pp. 419-428
    • Heijink, I.H.1    Brandenurg, S.M.2    Postma, D.S.3    Van Oosterhout, A.J.4
  • 31
    • 80052650692 scopus 로고    scopus 로고
    • Cigarette smoke, bacteria, mold, microbial toxins, and chronic lung inflammation
    • Pauly JL, Paszkiewicz G. Cigarette smoke, bacteria, mold, microbial toxins, and chronic lung inflammation. J Oncol 2011; 2011: 81929.
    • (2011) J Oncol , vol.2011 , pp. 81929
    • Pauly, J.L.1    Paszkiewicz, G.2
  • 32
    • 77049098120 scopus 로고    scopus 로고
    • A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbation
    • Huang YJ, Kim E, Cox MJ, et al A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbation. OMICS 2010; 14: 9-59.
    • (2010) OMICS , vol.14 , pp. 9-59
    • Huang, Y.J.1    Kim, E.2    Cox, M.J.3
  • 33
    • 84861399683 scopus 로고    scopus 로고
    • The lung tissue microbiome in chronic obstructive pulmonary disease
    • Sze MA, Dimitriu PA, Hayashi S, et al. The lung tissue microbiome in chronic obstructive pulmonary disease. Am J Respir Crit Care Med 2012; 185: 1073-1080.
    • (2012) Am J Respir Crit Care Med , vol.185 , pp. 1073-1080
    • Sze, M.A.1    Dimitriu, P.A.2    Hayashi, S.3
  • 34
    • 84887874141 scopus 로고    scopus 로고
    • Outgrowth of the bacterial airway microbiome after rhinovirus exacerbation of chronic obstuctrive pulmonary disease
    • Molyneaux PL, Mallia P, Cox MJ, et al. Outgrowth of the bacterial airway microbiome after rhinovirus exacerbation of chronic obstuctrive pulmonary disease. Am J Respir Crit Care Med 2013; 188: 1224-1231.
    • (2013) Am J Respir Crit Care Med , vol.188 , pp. 1224-1231
    • Molyneaux, P.L.1    Mallia, P.2    Cox, M.J.3
  • 35
    • 0037136585 scopus 로고    scopus 로고
    • Environmental exposure to endotoxin and its relation to asthma in school-Age children
    • Braun-Fahrlander C, Riedler J, Herz U, et al. Environmental exposure to endotoxin and its relation to asthma in school-Age children. N Engl J Med 2002; 347: 869-877.
    • (2002) N Engl J Med , vol.347 , pp. 869-877
    • Braun-Fahrlander, C.1    Riedler, J.2    Herz, U.3
  • 36
    • 84919643695 scopus 로고    scopus 로고
    • Acinetobacter species in the skin microbiota protects against allergic sensitization and inflammation
    • Fyhrquist N, Ruokolainen L, Suomalainen A, et al. Acinetobacter species in the skin microbiota protects against allergic sensitization and inflammation. J Allergy Clin Immunol 2014; 134: 1301-1309.
    • (2014) J Allergy Clin Immunol , vol.134 , pp. 1301-1309
    • Fyhrquist, N.1    Ruokolainen, L.2    Suomalainen, A.3
  • 37
    • 84893704050 scopus 로고    scopus 로고
    • Gut microbiota metabolism of dietary fiber influences allergic airway disease and hematopoiesis
    • Trompette A, Gollwitzer ES, Yadava K, et al. Gut microbiota metabolism of dietary fiber influences allergic airway disease and hematopoiesis. Nat Med 2014; 20: 159-166.
    • (2014) Nat Med , vol.20 , pp. 159-166
    • Trompette, A.1    Gollwitzer, E.S.2    Yadava, K.3
  • 38
    • 33644845011 scopus 로고    scopus 로고
    • Bacterial and fungal agents in house dust and wheeze in children: The parsifal study
    • Schram-Bijkerk D, Doekes G, Douwes J, et al. Bacterial and fungal agents in house dust and wheeze in children: The PARSIFAL study. Clin Exp Allergy 2005; 35: 1272-1278.
    • (2005) Clin Exp Allergy , vol.35 , pp. 1272-1278
    • Schram-Bijkerk, D.1    Doekes, G.2    Douwes, J.3
  • 39
    • 79951972586 scopus 로고    scopus 로고
    • Exposure to environmental microorganisms and childhood asthma
    • Ege MJ, Mayer M, Normand AC, et al. Exposure to environmental microorganisms and childhood asthma. N Engl J Med 2011; 364: 701-709.
    • (2011) N Engl J Med , vol.364 , pp. 701-709
    • Ege, M.J.1    Mayer, M.2    Normand, A.C.3
  • 40
    • 77955269976 scopus 로고    scopus 로고
    • Les virus des bronchiolites aiguës
    • Freymuth F, Vabret A, Dina J, et al. Les virus des bronchiolites aiguës. Arch Pediatr 2010; 17: 1192-1201.
    • (2010) Arch Pediatr , vol.17 , pp. 1192-1201
    • Freymuth, F.1    Vabret, A.2    Dina, J.3
  • 41
    • 77958471150 scopus 로고    scopus 로고
    • Asthma and allergy patterns over 18 years after severe rsv bronchiolitis in the first year of life
    • Sigurs N, Aljassim F, Kjellman B, et al. Asthma and allergy patterns over 18 years after severe RSV bronchiolitis in the first year of life. Thorax 2010; 65: 1045-1052.
    • (2010) Thorax , vol.65 , pp. 1045-1052
    • Sigurs, N.1    Aljassim, F.2    Kjellman, B.3
  • 42
    • 84862883755 scopus 로고    scopus 로고
    • Determinants of asthma after severe respiratory syncytial virus bronchiolitis
    • Bacharier LB, Cohen R, Schweiger T, et al. Determinants of asthma after severe respiratory syncytial virus bronchiolitis. J Allergy Clin Immunol 2012; 130: 91-100.
    • (2012) J Allergy Clin Immunol , vol.130 , pp. 91-100
    • Bacharier, L.B.1    Cohen, R.2    Schweiger, T.3
  • 43
    • 33847376444 scopus 로고    scopus 로고
    • Bacterial colonization in respiratory secretions from acute and recurrent wheezing infants and children
    • Nagayama Y, Tsubaki T, Nakayama S, et al. Bacterial colonization in respiratory secretions from acute and recurrent wheezing infants and children. Pediatr Allergy Immunol 2007; 18: 110-117.
    • (2007) Pediatr Allergy Immunol , vol.18 , pp. 110-117
    • Nagayama, Y.1    Tsubaki, T.2    Nakayama, S.3
  • 44
    • 84859793554 scopus 로고    scopus 로고
    • Bacteria in sputum of stable severe asthma and increased airway wall thickness
    • Zhang Q, Illing R, Hui CK, et al. Bacteria in sputum of stable severe asthma and increased airway wall thickness. Respir Res 2012; 13: 35.
    • (2012) Respir Res , vol.13 , pp. 35
    • Zhang, Q.1    Illing, R.2    Hui, C.K.3
  • 45
    • 35248851540 scopus 로고    scopus 로고
    • Childhood asthma after bacterial colonization of the airway in neonates
    • Bisgaard H, Hermansen MN, Buchvald F, et al. Childhood asthma after bacterial colonization of the airway in neonates. N Engl J Med 2007; 357: 1487-1495.
    • (2007) N Engl J Med , vol.357 , pp. 1487-1495
    • Bisgaard, H.1    Hermansen, M.N.2    Buchvald, F.3
  • 46
    • 84901760493 scopus 로고    scopus 로고
    • The upper respiratory tract as a microbial source for pulmonary infections in cystic fibrosis. Parallels from island biogeography
    • Whiteson KL, Bailey B, Bergkessel M, et al. The upper respiratory tract as a microbial source for pulmonary infections in cystic fibrosis. Parallels from island biogeography. Am J Respir Crit Care Med 2014; 189: 1309-1315.
    • (2014) Am J Respir Crit Care Med , vol.189 , pp. 1309-1315
    • Whiteson, K.L.1    Bailey, B.2    Bergkessel, M.3
  • 47
    • 84947924502 scopus 로고    scopus 로고
    • Un nouveau concept: Le mycobiome pulmonaire
    • Nguyen L, Delhaes L. Un nouveau concept: le mycobiome pulmonaire. Med Sci (Paris) 2015; 31: 945-947.
    • (2015) Med Sci (Paris , vol.31 , pp. 945-947
    • Nguyen, L.1    Delhaes, L.2


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