-
1
-
-
84868310579
-
Addressing statistical biases in nucleotide-derived protein databases for proteogenomic search strategies
-
Blakeley, P. et al. (2012) Addressing statistical biases in nucleotide-derived protein databases for proteogenomic search strategies. J. Proteome Res., 11, 5221-5234.
-
(2012)
J. Proteome Res.
, vol.11
, pp. 5221-5234
-
-
Blakeley, P.1
-
2
-
-
77952980794
-
Proteogenomics of Pristionchus pacificus reveals distinct proteome structure of nematode models
-
Borchert, N. et al. (2010) Proteogenomics of Pristionchus pacificus reveals distinct proteome structure of nematode models. Genome Res., 20, 837-846.
-
(2010)
Genome Res.
, vol.20
, pp. 837-846
-
-
Borchert, N.1
-
3
-
-
84894619287
-
HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics
-
Branca, R.M. et al. (2014) HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics. Nat. Methods, 11, 59-62.
-
(2014)
Nat. Methods
, vol.11
, pp. 59-62
-
-
Branca, R.M.1
-
4
-
-
79955555530
-
Shotgun proteomics AIDS discovery of novel proteincoding genes, alternative splicing, and "resurrected" pseudogenes in the mouse genome
-
Brosch, M. et al. (2011) Shotgun proteomics aids discovery of novel proteincoding genes, alternative splicing, and "resurrected" pseudogenes in the mouse genome. Genome Res., 21, 756-767.
-
(2011)
Genome Res.
, vol.21
, pp. 756-767
-
-
Brosch, M.1
-
5
-
-
80555142954
-
A proteogenomic analysis of anopheles gambiae using high-resolution fourier transform mass spectrometry
-
Chaerkady, R. et al. (2011) A proteogenomic analysis of anopheles gambiae using high-resolution fourier transform mass spectrometry. Genome Res., 21, 1872-1881.
-
(2011)
Genome Res.
, vol.21
, pp. 1872-1881
-
-
Chaerkady, R.1
-
6
-
-
48249147316
-
High accuracy mass spectrometry analysis as a tool to verify and improve gene annotation using Mycobacterium tuberculosis as an example
-
de Souza, G.A. et al. (2008) High accuracy mass spectrometry analysis as a tool to verify and improve gene annotation using Mycobacterium tuberculosis as an example. BMC Genomics, 9, 316.
-
(2008)
BMC Genomics
, vol.9
, pp. 316
-
-
De Souza, G.A.1
-
7
-
-
33847630405
-
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
-
Elias, J.E., Gygi, S.P. (2007) Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat. Methods, 4, 207-214.
-
(2007)
Nat. Methods
, vol.4
, pp. 207-214
-
-
Elias, J.E.1
Gygi, S.P.2
-
8
-
-
84864383786
-
Bayesian false discovery rates for post-translational modification proteomics
-
Fu, Y. (2012) Bayesian false discovery rates for post-translational modification proteomics. Stat. Interface, 5, 47-59.
-
(2012)
Stat. Interface
, vol.5
, pp. 47-59
-
-
Fu, Y.1
-
9
-
-
84899714889
-
Transferred subgroup false discovery rate for rare post-translational modifications detected by mass spectrometry
-
Fu, Y., Qian, X. (2014) Transferred subgroup false discovery rate for rare post-translational modifications detected by mass spectrometry. Mol. Cell. Proteomics, 13, 1359-1368.
-
(2014)
Mol. Cell. Proteomics
, vol.13
, pp. 1359-1368
-
-
Fu, Y.1
Qian, X.2
-
10
-
-
0942287072
-
Proteogenomic mapping as a complementary method to perform genome annotation
-
Jaffe, J.D. et al. (2004) Proteogenomic mapping as a complementary method to perform genome annotation. Proteomics, 4, 59-77.
-
(2004)
Proteomics
, vol.4
, pp. 59-77
-
-
Jaffe, J.D.1
-
11
-
-
35748972060
-
Semi-supervised learning for peptide identification from shotgun proteomics datasets
-
Kall, L. et al. (2007) Semi-supervised learning for peptide identification from shotgun proteomics datasets. Nat. Methods, 4, 923-925.
-
(2007)
Nat. Methods
, vol.4
, pp. 923-925
-
-
Kall, L.1
-
12
-
-
83055173265
-
Proteogenomic analysis of Mycobacterium tuberculosis by high resolutionmass spectrometry
-
Kelkar, D.S. et al. (2011) Proteogenomic analysis of Mycobacterium tuberculosis by high resolutionmass spectrometry. Mol. Cell. Proteomics, 10, M111 011627.
-
(2011)
Mol. Cell. Proteomics
, vol.10
, Issue.M111
, pp. 011627
-
-
Kelkar, D.S.1
-
13
-
-
84901599553
-
A draft map of the human proteome
-
Kim, M.S. et al. (2014) A draft map of the human proteome. Nature, 509, 575-581.
-
(2014)
Nature
, vol.509
, pp. 575-581
-
-
Kim, M.S.1
-
14
-
-
84887111113
-
Deep coverage of the Escherichia coli proteome enables the assessment of false discovery rates in simple proteogenomic experiments
-
Krug, K. et al. (2013) Deep coverage of the Escherichia coli proteome enables the assessment of false discovery rates in simple proteogenomic experiments. Mol. Cell. Proteomics, 12, 3420-3430.
-
(2013)
Mol. Cell. Proteomics
, vol.12
, pp. 3420-3430
-
-
Krug, K.1
-
15
-
-
53549100731
-
Use of shotgun proteomics for the identification, confirmation, and correction of C. Elegans gene annotations
-
Merrihew, G.E. et al. (2008) Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations. Genome Res., 18, 1660-1669.
-
(2008)
Genome Res.
, vol.18
, pp. 1660-1669
-
-
Merrihew, G.E.1
-
16
-
-
84908540871
-
Proteogenomics: Concepts, applications and computational strategies
-
Nesvizhskii, A.I. (2014) Proteogenomics: concepts, applications and computational strategies. Nat. Methods, 11, 1114-1125.
-
(2014)
Nat. Methods
, vol.11
, pp. 1114-1125
-
-
Nesvizhskii, A.I.1
-
17
-
-
79551475673
-
Proteogenomics
-
Renuse, S. et al. (2011) Proteogenomics. Proteomics, 11, 620-630.
-
(2011)
Proteomics
, vol.11
, pp. 620-630
-
-
Renuse, S.1
-
18
-
-
84907269780
-
Proteogenomic characterization of human colon and rectal cancer
-
Zhang, B. et al. (2014) Proteogenomic characterization of human colon and rectal cancer. Nature, 513, 382-387.
-
(2014)
Nature
, vol.513
, pp. 382-387
-
-
Zhang, B.1
|