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Volumn 5, Issue 11, 2015, Pages 2323-2327

bz-rates: A web tool to estimate mutation rates from fluctuation analysis

Author keywords

Fluctuation assay; Luria Delbr ck; Mutation rate

Indexed keywords

ANALYTICAL PARAMETERS; ARTICLE; BIOSYNTHESIS; CELL DIVISION; CELL MUTANT; FLUCTUATION ANALYSIS; GROWTH; GROWTH CURVE; GROWTH RATE; HOMOLOGOUS RECOMBINATION; MUTATION RATE; NONHUMAN; WEB BROWSER; WILD TYPE; BACTERIAL GENOME; SOFTWARE;

EID: 84947461524     PISSN: None     EISSN: 21601836     Source Type: Journal    
DOI: 10.1534/g3.115.019836     Document Type: Article
Times cited : (43)

References (22)
  • 1
    • 0028238179 scopus 로고
    • Fluctuation analysis of mutations to nalidixic acid resistance in Escherichia coli
    • Boe, L., T. Tolker-Nielsen, K. M. Eegholm, H. Spliid, and A. Vrang, 1994 Fluctuation analysis of mutations to nalidixic acid resistance in Escherichia coli. J. Bacteriol. 176: 2781-2787.
    • (1994) J. Bacteriol. , vol.176 , pp. 2781-2787
    • Boe, L.1    Tolker-Nielsen, T.2    Eegholm, K.M.3    Spliid, H.4    Vrang, A.5
  • 2
    • 33745211644 scopus 로고    scopus 로고
    • Methods for determining spontaneous mutation rates
    • Foster, P. L., 2006 Methods for determining spontaneous mutation rates. Methods Enzymol. 409: 195-213.
    • (2006) Methods Enzymol. , vol.409 , pp. 195-213
    • Foster, P.L.1
  • 3
    • 59449104244 scopus 로고    scopus 로고
    • A simple formula for obtaining markedly improved mutation rate estimates
    • Gerrish, P. J., 2008 A simple formula for obtaining markedly improved mutation rate estimates. Genetics 180: 1773-1778.
    • (2008) Genetics , vol.180 , pp. 1773-1778
    • Gerrish, P.J.1
  • 4
    • 66349117823 scopus 로고    scopus 로고
    • Fluctuation analysis CalculatOR: a web tool for the determination of mutation rate using Luria-Delbruck fluctuation analysis
    • Hall, B. M., C.-X. Ma, P. Liang, and K. K. Singh, 2009 Fluctuation analysis CalculatOR: a web tool for the determination of mutation rate using Luria-Delbruck fluctuation analysis. Bioinformatics 25: 1564-1565.
    • (2009) Bioinformatics , vol.25 , pp. 1564-1565
    • Hall, B.M.1    Ma, C.-X.2    Liang, P.3    Singh, K.K.4
  • 5
    • 84875403848 scopus 로고    scopus 로고
    • Statistics for the Luria-Delbrück distribution
    • Hamon, A., and B. Ycart, 2012 Statistics for the Luria-Delbrück distribution. Electron. J. Stat. 6: 1251-1272.
    • (2012) Electron. J. Stat. , vol.6 , pp. 1251-1272
    • Hamon, A.1    Ycart, B.2
  • 6
    • 13344258035 scopus 로고
    • On the distribution of bacterial mutants: the effects of differential fitness of mutants and non-mutants
    • Jaeger, G., and S. Sarkar, 1995 On the distribution of bacterial mutants: the effects of differential fitness of mutants and non-mutants. Genetica 96: 217-223.
    • (1995) Genetica , vol.96 , pp. 217-223
    • Jaeger, G.1    Sarkar, S.2
  • 7
    • 0027165722 scopus 로고
    • Accounting for plating efficiency when estimating spontaneous mutation rates
    • Jones, M. E., 1993 Accounting for plating efficiency when estimating spontaneous mutation rates. Mutat. Res. 292: 187-189.
    • (1993) Mutat. Res. , vol.292 , pp. 187-189
    • Jones, M.E.1
  • 8
    • 0028183298 scopus 로고
    • LB fluctuation experiments; accounting simultaneously for plating efficiency and differential growth rate
    • Jones, M. E., 1994 LB fluctuation experiments; accounting simultaneously for plating efficiency and differential growth rate. J. Theor. Biol. 166: 355-363.
    • (1994) J. Theor. Biol. , vol.166 , pp. 355-363
    • Jones, M.E.1
  • 9
    • 0019972442 scopus 로고
    • Mutation and growth rates from Luria-Delbrtick fluctuation tests
    • Koch, A. L., 1982 Mutation and growth rates from Luria-Delbrtick fluctuation tests. Mutat. Res. 95: 129-143.
    • (1982) Mutat. Res. , vol.95 , pp. 129-143
    • Koch, A.L.1
  • 10
    • 40849138236 scopus 로고    scopus 로고
    • Estimating the per-base-pair mutation rate in the yeast Saccharomyces cerevisiae
    • Lang, G. I., and A. W. Murray, 2008 Estimating the per-base-pair mutation rate in the yeast Saccharomyces cerevisiae. Genetics 178: 67-82.
    • (2008) Genetics , vol.178 , pp. 67-82
    • Lang, G.I.1    Murray, A.W.2
  • 11
    • 0001313535 scopus 로고
    • The distribution of the numbers of mutants in bacterial populations
    • Lea, D., and C. A. Coulson, 1949 The distribution of the numbers of mutants in bacterial populations. J. Genet. 49: 264-285.
    • (1949) J. Genet. , vol.49 , pp. 264-285
    • Lea, D.1    Coulson, C.A.2
  • 12
    • 0001641514 scopus 로고
    • Mutations of bacteria from virus sensitivity to virus resistance'-'
    • Luria, E., and M. Delbrück, 1943 Mutations of bacteria from virus sensitivity to virus resistance'-'. Genetics 28: 491-511.
    • (1943) Genetics , vol.28 , pp. 491-511
    • Luria, E.1    Delbrück, M.2
  • 13
    • 0026470403 scopus 로고
    • On fluctuation analysis: a new, simple and efficient method for computing the expected number of mutants
    • Sarkar, S., W. T. Ma, and G. H. Sandri, 1992 On fluctuation analysis: a new, simple and efficient method for computing the expected number of mutants. Genetica 85: 173-179.
    • (1992) Genetica , vol.85 , pp. 173-179
    • Sarkar, S.1    Ma, W.T.2    Sandri, G.H.3
  • 14
    • 0025988968 scopus 로고
    • Fluctuation analysis: the effect of plating efficiency
    • Stewart, F. M., 1991 Fluctuation analysis: the effect of plating efficiency. Genetica 84: 51-55.
    • (1991) Genetica , vol.84 , pp. 51-55
    • Stewart, F.M.1
  • 15
    • 0027968460 scopus 로고
    • Tests: how reliable are the estimates of mutation rates?
    • Stewart, F. M., 1994 Tests: how reliable are the estimates of mutation rates? Genetics 1146: 1139-1146.
    • (1994) Genetics , vol.1146 , pp. 1139-1146
    • Stewart, F.M.1
  • 16
    • 0025175014 scopus 로고
    • Fluctuation analysis: the probability distribution of the number mutants under different conditions
    • Stewart, F. M., D. M. Gordon, and B. R. Levin, 1990 Fluctuation analysis: the probability distribution of the number mutants under different conditions. Genetics 124: 175-185.
    • (1990) Genetics , vol.124 , pp. 175-185
    • Stewart, F.M.1    Gordon, D.M.2    Levin, B.R.3
  • 17
    • 84892607166 scopus 로고    scopus 로고
    • Fluctuation analysis: can estimates be trusted?
    • Ycart, B., 2013 Fluctuation analysis: can estimates be trusted? PLoS One 8: e80958.
    • (2013) PLoS One , vol.8
    • Ycart, B.1
  • 18
    • 84903773495 scopus 로고    scopus 로고
    • Unbiased estimation of mutation rates under fluctuating final counts
    • Ycart, B., and N. Veziris, 2014 Unbiased estimation of mutation rates under fluctuating final counts. PLoS One 9: e101434.
    • (2014) PLoS One , vol.9
    • Ycart, B.1    Veziris, N.2
  • 19
    • 0036226637 scopus 로고    scopus 로고
    • Statistical and algorithmic methods for fluctuation analysis with SALVADOR as an implementation
    • Zheng, Q., 2002 Statistical and algorithmic methods for fluctuation analysis with SALVADOR as an implementation. Math. Biosci. 176: 237-252.
    • (2002) Math. Biosci. , vol.176 , pp. 237-252
    • Zheng, Q.1
  • 20
    • 23044450296 scopus 로고    scopus 로고
    • New algorithms for Luria-Delbrück fluctuation analysis
    • Zheng, Q., 2005 New algorithms for Luria-Delbrück fluctuation analysis. Math. Biosci. 196: 198-214.
    • (2005) Math. Biosci. , vol.196 , pp. 198-214
    • Zheng, Q.1
  • 21
    • 56049108085 scopus 로고    scopus 로고
    • A note on plating efficiency in fluctuation experiments
    • Zheng, Q., 2008a A note on plating efficiency in fluctuation experiments. Math. Biosci. 216: 150-153.
    • (2008) Math. Biosci. , vol.216 , pp. 150-153
    • Zheng, Q.1
  • 22
    • 84860992343 scopus 로고    scopus 로고
    • SALVADOR 2.3: A tool for studying mutation rates
    • Accessed: September 14, 2015
    • Zheng, Q., 2008b SALVADOR 2.3: A tool for studying mutation rates. Available at: http://library.wolfram.com/infocenter/MathSource/7082. Accessed: September 14, 2015.
    • (2008)
    • Zheng, Q.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.