Porting a molecular dynamics application on a low-cost cluster of personal computers running GAMMA

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 1388, Issue , 1998, Pages 524-533

  Ciaccio, G ^a   Di Martino, V ^b  

^a UNIVERSITY OF GENOA   (Italy)

^b SAPIENZA UNIVERSITY OF ROME   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER OPERATING SYSTEMS; COSTS; FORTRAN (PROGRAMMING LANGUAGE); MOLECULAR DYNAMICS;

COMMUNICATION FUNCTIONS; COMMUNICATION POLICIES; COMMUNICATION STYLES; HARDWARE PLATFORM; HIGH THROUGHPUT; INTERPROCESS COMMUNICATION; LINUX- OPERATING SYSTEM; PROGRAMMING LIBRARY;

PERSONAL COMPUTERS;

EID: 84947442389     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/3-540-64359-1_725     Document Type: Conference Paper

References (11)

1. Connection Machine CM-5 Technical Summary. Technical report, Thinking Machines Corporation, Cambridge, Massachusetts, 1992.
2. G. Chiola and G. Ciaccio. GAMMA: Architecture, Programming Interface and Preliminary Benchmarking. Technical Report DISI-TR-96-22, DISI, Universit di Genova, November 1996.
3. G. Chiola and G. Ciaccio. Implementing a Low Cost, Low Latency Parallel Platform. Parallel Computing, (22):1703-1717, 1997.
4. G. Ciaccio. Optimal Communication Performance on Fast Ethernet with GAMMA. In Proc. International Workshop on Personal Computer based Networks Of Workstations (PC-NO W'98), to appear (LNCS), Orlando, Florida, April 1998. Springer.
5. D. Culler, K. Keeton, L.T. Liu, A. Mainwaring, R. Martin, S. Rodriguez, K. Wright, and C. Yoshikawa. Generic Active Message Interface Specification. Technical Report white paper of the NOW Team, Computer Science Dept., U. California at Berkeley, 1994.
6. V. Di Martino. Computer Simulation of Polarizable Fluids. In First European P VM Meeting, Rome, October 1994.
7. V. Di Martino and G. Ruocco. Molecular dynamics on Hybrid Memory Machines. In Fourth P VM-MPI European Meeting, Krakow, Poland, November 1997.
8. V. Di Martino, G. Ruocco, and M. Sampoli. Molecular dynamics of polarizable fluids on parallel systems. In HPC-ASIA '95, Taipei, Taiwan, September 1995.
9. V. Sunderam. PVM: A Framework for Parallel Distributed Computing. Concurrency: Practice and Experience, pages 315-339, December 1990.
10. The Message Passing Interface Forum. MPI: A Message Passing Interface Standard. Technical report, University of Tennessee, Knoxville, Tennessee, 1995.
11. T. von Eicken, D.E. Culler, S.C. Goldstein, and K.E. Schauser. Active Messages: A Mechanism for Integrated Communication and Computation. In Proc. oJ the 19th Annual Int'l Syrup. on Computer Architecture (ISCA '92), Gold Coast, Australia, May 1992. ACM Press.