MicroRNA molecular profiling from matched tumor and bio-fluids in bladder cancer

Molecular Cancer

Volumn 14, Issue 1, 2015, Pages

  Armstrong, David A ^a   Green, Benjamin B ^a   Seigne, John D ^b   Schned, Alan R ^b   Marsit, Carmen J ^a  

^a DARTMOUTH MEDICAL SCHOOL   (United States)

^b DARTMOUTH HITCHCOCK MEDICAL CENTER   (United States)

Author keywords

Bladder Cancer; Droplet digital PCR; Exosomes; MicroRNA; NanoString; Plasma; Urine

Indexed keywords

MICRORNA 126 3P; MICRORNA 150 5P; MICRORNA 15B 5P; MICRORNA 21; MICRORNA 4454; MICRORNA 93 5P; UNCLASSIFIED DRUG; MICRORNA; MIRN126 MICRORNA, HUMAN; TUMOR MARKER;

AGED; ARTICLE; BLADDER CANCER; CANCER GRADING; CELL FRACTIONATION; CLINICAL ARTICLE; ERYTHROCYTE; EXOSOME; FEMALE; HEMOLYSIS; HUMAN; LEUKOCYTE COUNT; MALE; POLYMERASE CHAIN REACTION; URINE; VALIDITY; VERY ELDERLY; BLADDER TUMOR; GENE EXPRESSION REGULATION; GENETICS; MIDDLE AGED;

AGED; BIOMARKERS, TUMOR; EXOSOMES; FEMALE; GENE EXPRESSION REGULATION, NEOPLASTIC; HUMANS; MALE; MICRORNAS; MIDDLE AGED; URINARY BLADDER NEOPLASMS;

EID: 84947440462     PISSN: None     EISSN: 14764598     Source Type: Journal    
DOI: 10.1186/s12943-015-0466-2     Document Type: Article

References (29)

1. Ferlay J, Soerjomataram I, Dikshit R, Eser S, Mathers C, Rebelo M, et al. Cancer incidence and mortality worldwide: sources, methods and major patterns in GLOBOCAN 2012. Int J Cancer. 2015;136(5):E359-86.
2. Scheffer AR, Holdenrieder S, Kristiansen G, von Ruecker A, Müller SC, Ellinger J, et al. Circulating microRNAs in serum: novel biomarkers for patients with bladder cancer? World J Urol. 2014;32(2):353-8.
3. Kozomara A, Griffiths-Jones S. miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Res. 2014;42(Database issue):D68-73.
4. Laffont B, Corduan A, Plé H, Duchez AC, Cloutier N, Boilard E, et al. Activated platelets can deliver mRNA regulatory Ago2*microRNA complexes to endothelial cells via microparticles. Blood. 2013;122(2):253-61.
5. Wang J, Raimondo M, Guha S, Chen J, Diao L, Dong X, et al. Circulating micrornas in pancreatic juice as candidate biomarkers of pancreatic cancer. J Cancer Educ. 2014;5(8):696-705.
6. Hur, K, Toiyama Y, Schetter AJ, Okugawa Y, Harris CC, Boland CR, et al., Identification of a metastasis-specific MicroRNA signature in human colorectal cancer. J Natl Cancer Inst, 2015. 107(3). doi: 10.1093/jnci/dju492.
7. Braicu C, Cojocneanu-Petric R, Chira S, Truta A, Floares A, Petrut B, et al. Clinical and pathological implications of miRNA in bladder cancer. Int J Nanomedicine. 2015;10:791-800.
8. Pritchard CC, Kroh E, Wood B, Arroyo JD, Dougherty KJ, Miyaji MM, et al. Blood cell origin of circulating microRNAs: a cautionary note for cancer biomarker studies. Cancer Prev Res (Phila). 2012;5(3):492-7.
9. Shi Z, Wei Q, Zhang M, She J, et al. MicroRNAs in bladder cancer: expression profiles, biological functions, regulation, and clinical implications. Crit Rev Eukaryot Gene Expr. 2014;24(1):55-75.
10. Hanke M, Hoefig K, Merz H, Feller AC, Kausch I, Jocham D, et al. A robust methodology to study urine microRNA as tumor marker: MicroRNA-126 and microRNA-182 are related to urinary bladder cancer. Urol Oncol. 2010;28(6):655-61.
11. Miah S, Dudziec E, Drayton RM, Zlotta AR, Morgan SL, Rosario DJ, et al. An evaluation of urinary microRNA reveals a high sensitivity for bladder cancer. Br J Cancer. 2012;107(1):123-8.
12. Puerta-Gil P, Garcia-Baquero R, Jia AY, Ocana S, Alverez-Mugica M, Alverez-Ossorio JL, et al. miR-143, miR-222, and miR-452 are useful as tumor stratification and noninvasive diagnostic biomarkers for bladder cancer. Am J Pathol. 2012;180(5):1808-15.
13. Adam L, Wszolek MF, Liu CG, Jing W, Diao L, Zien A, et al. Plasma microRNA profiles for bladder cancer detection. Urol Oncol. 2013;31(8):1701-8.
14. Feng Y, Liu J, Kang Y, He Y, Liang B, Yang P, et al. miR-19a acts as an oncogenic microRNA and is up-regulated in bladder cancer. J Exp Clin Cancer Res. 2014;33:67.
15. Ji H, Chen M, Greening DW, He W, Rai A, Zhang W, et al. Deep sequencing of RNA from three different extracellular vesicle (EV) subtypes released from the human LIM1863 colon cancer cell line uncovers distinct miRNA-enrichment signatures. PLoS One. 2014;9(10):e110314.
16. Zhou F, Wang W, Xing Y, Wang T, Xu X, Wang J, et al. NF-kappaB target microRNAs and their target genes in TNFalpha-stimulated HeLa cells. Biochim Biophys Acta. 2014;1839(4):344-54.
17. Garcia DM, Baek D, Shin C, Bell GW, Grimson A, Bartel DP, et al. Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs. Nat Struct Mol Biol. 2011;18(10):1139-46.
18. Haussecker D, Huang Y, Lau A, Parameswaran P, Fire AZ, Kay MA, et al. Human tRNA-derived small RNAs in the global regulation of RNA silencing. RNA. 2010;16(4):673-95.
19. Kumar P, Anaya J, Mudunuri SB, Dutta A. Meta-analysis of tRNA derived RNA fragments reveals that they are evolutionarily conserved and associate with AGO proteins to recognize specific RNA targets. BMC Biol. 2014;12:78.
20. Kumar P, Mudunuri SB, Anaya J, Dutta A. TRFdb: a database for transfer RNA fragments. Nucleic Acids Res. 2015;43(Database issue):D141-5.
21. Guzman N, Agarwal K, Asthagiri D, Yu L, Saji M, Ringel MD, et al., Breast Cancer-Specific miR Signature Unique to Extracellular Vesicles includes "microRNA-like" tRNA Fragments. Mol Cancer Res, 2015. doi: 10.1158/1541-7786.MCR-14-0533.
22. Wang X, Kuang Y, Shen X, Zhou H, Chen Y, Han Y, et al. Evaluation of miR-720 prognostic significance in patients with colorectal cancer. Tumour Biol. 2015;36(2):719-27.
23. Sheedy FJ. Turning 21: Induction of miR-21 as a key switch in the inflammatory response. Front Immunol. 2015;6:19.
24. Lorenzen, J.M., Vascular and circulating microRNAs in renal ischemia reperfusion injury. J Physiol, 2015. doi: 10.1113/JP270318.
25. Kirschner MB, Edelman JJ, Kao SC, Vallely MP, van Zandwijk N, and Reid G. The impact of hemolysis on cell-free microRNA biomarkers. Front Genet. 2013;4:94.
26. Kim SM, Kang HW, Kim WT, Kim YJ, Yun SJ, Lee SC, et al. Cell-free microRNA-214 from urine as a biomarker for non-muscle-invasive bladder cancer. Korean J Urol. 2013;54(11):791-6.
27. Ratert N, Meyer HA, Jung M, Lioudmer P, Mollenkopf HJ, Wagner I, et al. miRNA profiling identifies candidate mirnas for bladder cancer diagnosis and clinical outcome. J Mol Diagn. 2013;15(5):695-705.
28. Corduan A, Ple H, Laffont B, Wallon T, Plante I, Landry P, et al. Dissociation of SERPINE1 mRNA from the translational repressor proteins Ago2 and TIA-1 upon platelet activation. Thromb Haemost. 2015;113(5):1046-59.
29. Valadi H, Ekstrom K, Bossios A, Sjostrand M, Lee JJ, Lotvall JO. Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells. Nat Cell Biol. 2007;9(6):654-9.