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Volumn 42, Issue 5, 2015, Pages 249-260

The Study of Carbamoyl Phosphate Synthetase 1 Deficiency Sheds Light on the Mechanism for Switching On/Off the Urea Cycle

Author keywords

Allosteric regulation; Carbamoyl phosphate synthetase 1; Enzyme; Hyperammonemia; Inborn errors; Restrained molecular dynamics; Site directed mutagenesis; Urea cycle diseases

Indexed keywords

CARBAMOYL PHOSPHATE SYNTHASE; N ACETYLGLUTAMIC ACID; AMMONIA; GLUTAMIC ACID DERIVATIVE; N-ACETYLGLUTAMIC ACID; UREA;

EID: 84947047707     PISSN: 16738527     EISSN: 18735533     Source Type: Journal    
DOI: 10.1016/j.jgg.2015.03.009     Document Type: Article
Times cited : (26)

References (46)
  • 2
    • 0026705301 scopus 로고
    • Oxidative inactivation of carbamoyl phosphate synthetase (ammonia). Mechanism and sites of oxidation, degradation of the oxidized enzyme, and inactivation by glycerol, EDTA, and thiol protecting agents
    • Alonso E., Cervera J., Garcia-Espana A., Bendala E., Rubio V. Oxidative inactivation of carbamoyl phosphate synthetase (ammonia). Mechanism and sites of oxidation, degradation of the oxidized enzyme, and inactivation by glycerol, EDTA, and thiol protecting agents. J. Biol. Chem. 1992, 267:4524-4532.
    • (1992) J. Biol. Chem. , vol.267 , pp. 4524-4532
    • Alonso, E.1    Cervera, J.2    Garcia-Espana, A.3    Bendala, E.4    Rubio, V.5
  • 3
    • 85047691307 scopus 로고
    • Affinity cleavage of carbamoyl-phosphate synthetase I localizes regions of the enzyme interacting with the molecule of ATP that phosphorylates carbamate
    • Alonso E., Rubio V. Affinity cleavage of carbamoyl-phosphate synthetase I localizes regions of the enzyme interacting with the molecule of ATP that phosphorylates carbamate. Eur. J. Biochem. 1995, 229:377-384.
    • (1995) Eur. J. Biochem. , vol.229 , pp. 377-384
    • Alonso, E.1    Rubio, V.2
  • 5
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
    • Bradford M.M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 1976, 72:248-254.
    • (1976) Anal. Biochem. , vol.72 , pp. 248-254
    • Bradford, M.M.1
  • 6
    • 0001564260 scopus 로고    scopus 로고
    • Urea cycle enzymes
    • McGraw-Hill, New York, USA, C.R. Scriver, A.L. Beaudet, W.S. Sly, D. Valle, B. Child, K.W. Kinzler, B. Vogelstein (Eds.)
    • Brusilow S.W., Horwich A.L. Urea cycle enzymes. The Metabolic and Molecular Bases of Inherited Disease 2001, 1909-1963. McGraw-Hill, New York, USA. eighth ed. C.R. Scriver, A.L. Beaudet, W.S. Sly, D. Valle, B. Child, K.W. Kinzler, B. Vogelstein (Eds.).
    • (2001) The Metabolic and Molecular Bases of Inherited Disease , pp. 1909-1963
    • Brusilow, S.W.1    Horwich, A.L.2
  • 8
    • 0027247482 scopus 로고
    • The influence of effectors and subunit interactions on Escherichia coli carbamoyl-phosphate synthetase studied by differential scanning calorimetry
    • Cervera J., Conejero-Lara F., Ruiz-Sanz J., Galisteo M.L., Mateo P.L., Lusty C.J., Rubio V. The influence of effectors and subunit interactions on Escherichia coli carbamoyl-phosphate synthetase studied by differential scanning calorimetry. J. Biol. Chem. 1993, 268:12504-12511.
    • (1993) J. Biol. Chem. , vol.268 , pp. 12504-12511
    • Cervera, J.1    Conejero-Lara, F.2    Ruiz-Sanz, J.3    Galisteo, M.L.4    Mateo, P.L.5    Lusty, C.J.6    Rubio, V.7
  • 9
    • 84901623224 scopus 로고    scopus 로고
    • Understanding carbamoyl phosphate synthetase (CPS1) deficiency by using the recombinantly purified human enzyme: effects of CPS1 mutations that concentrate in a central domain of unknown function
    • Díez-Fernández C., Hu L., Cervera J., Häberle J., Rubio V. Understanding carbamoyl phosphate synthetase (CPS1) deficiency by using the recombinantly purified human enzyme: effects of CPS1 mutations that concentrate in a central domain of unknown function. Mol. Genet. Metab. 2014, 112:123-132.
    • (2014) Mol. Genet. Metab. , vol.112 , pp. 123-132
    • Díez-Fernández, C.1    Hu, L.2    Cervera, J.3    Häberle, J.4    Rubio, V.5
  • 11
    • 33746978173 scopus 로고    scopus 로고
    • The frequent observation of evidence for nonsense-mediated decay in RNA from patients with carbamyl phosphate synthetase I deficiency
    • Eeds A.M., Hall L.D., Yadav M., Willis A., Summar S., Putnam A., Barr F., Summar M.L. The frequent observation of evidence for nonsense-mediated decay in RNA from patients with carbamyl phosphate synthetase I deficiency. Mol. Genet. Metab. 2006, 89:80-86.
    • (2006) Mol. Genet. Metab. , vol.89 , pp. 80-86
    • Eeds, A.M.1    Hall, L.D.2    Yadav, M.3    Willis, A.4    Summar, S.5    Putnam, A.6    Barr, F.7    Summar, M.L.8
  • 13
    • 2142857252 scopus 로고    scopus 로고
    • Structural organization of the human carbamyl phosphate synthetase I gene (CPS1) and identification of two novel genetic lesions
    • Funghini S., Donati M.A., Pasquini E., Zammarchi E., Morrone A. Structural organization of the human carbamyl phosphate synthetase I gene (CPS1) and identification of two novel genetic lesions. Hum. Mutat. 2003, 22:340-341.
    • (2003) Hum. Mutat. , vol.22 , pp. 340-341
    • Funghini, S.1    Donati, M.A.2    Pasquini, E.3    Zammarchi, E.4    Morrone, A.5
  • 14
    • 0016398881 scopus 로고
    • Lethal neonatal deficiency of carbamyl phosphate synthetase
    • Gelehrter T.D., Snodgrass P.J. Lethal neonatal deficiency of carbamyl phosphate synthetase. N. Engl. J. Med. 1974, 290:430-433.
    • (1974) N. Engl. J. Med. , vol.290 , pp. 430-433
    • Gelehrter, T.D.1    Snodgrass, P.J.2
  • 15
  • 16
    • 0037390625 scopus 로고    scopus 로고
    • Gene structure of human carbamylphosphate synthetase 1 and novel mutations in patients with neonatal onset
    • Häberle J., Schmidt E., Pauli S., Rapp B., Christensen E., Wermuth B., Koch H.G. Gene structure of human carbamylphosphate synthetase 1 and novel mutations in patients with neonatal onset. Hum. Mutat. 2003, 21:444.
    • (2003) Hum. Mutat. , vol.21 , pp. 444
    • Häberle, J.1    Schmidt, E.2    Pauli, S.3    Rapp, B.4    Christensen, E.5    Wermuth, B.6    Koch, H.G.7
  • 18
    • 0025935047 scopus 로고
    • Cloning and sequence of a cDNA encoding human carbamyl phosphate synthetase I: molecular analysis of hyperammonemia
    • Haraguchi Y., Uchino T., Takiguchi M., Endo F., Mori M., Matsuda I. Cloning and sequence of a cDNA encoding human carbamyl phosphate synthetase I: molecular analysis of hyperammonemia. Gene 1991, 107:335-340.
    • (1991) Gene , vol.107 , pp. 335-340
    • Haraguchi, Y.1    Uchino, T.2    Takiguchi, M.3    Endo, F.4    Mori, M.5    Matsuda, I.6
  • 19
    • 0027996538 scopus 로고
    • Carbamyl phosphate synthetase III, an evolutionary intermediate in the transition between glutamine-dependent and ammonia-dependent carbamyl phosphate synthetases
    • Hong J., Salo W.L., Lusty C.J., Anderson P.M. Carbamyl phosphate synthetase III, an evolutionary intermediate in the transition between glutamine-dependent and ammonia-dependent carbamyl phosphate synthetases. J. Mol. Biol. 1994, 243:131-140.
    • (1994) J. Mol. Biol. , vol.243 , pp. 131-140
    • Hong, J.1    Salo, W.L.2    Lusty, C.J.3    Anderson, P.M.4
  • 20
    • 34548232365 scopus 로고    scopus 로고
    • Inference of macromolecular assemblies from crystalline state
    • Krissinel E., Henrick K. Inference of macromolecular assemblies from crystalline state. J. Mol. Biol. 2007, 372:774-797.
    • (2007) J. Mol. Biol. , vol.372 , pp. 774-797
    • Krissinel, E.1    Henrick, K.2
  • 21
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • Laemmli U.K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 1970, 227:680-685.
    • (1970) Nature , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 25
    • 0019503839 scopus 로고
    • Autosomal recessive inheritance of human mitochondrial carbamyl phosphate synthetase deficiency
    • McReynolds J.W., Crowley B., Mahoney M.J., Rosenberg L.E. Autosomal recessive inheritance of human mitochondrial carbamyl phosphate synthetase deficiency. Am. J. Hum. Genet. 1981, 33:345-353.
    • (1981) Am. J. Hum. Genet. , vol.33 , pp. 345-353
    • McReynolds, J.W.1    Crowley, B.2    Mahoney, M.J.3    Rosenberg, L.E.4
  • 26
    • 0024489532 scopus 로고
    • Mechanism and regulation of the glutamine-dependent carbamyl phosphate synthetase of Escherichia coli
    • Meister A. Mechanism and regulation of the glutamine-dependent carbamyl phosphate synthetase of Escherichia coli. Adv. Enzymol. Relat. Areas Mol. Biol. 1989, 62:315-374.
    • (1989) Adv. Enzymol. Relat. Areas Mol. Biol. , vol.62 , pp. 315-374
    • Meister, A.1
  • 27
    • 0020095585 scopus 로고
    • Regulation of N-acetyl-L-glutamate degradation in mammalian liver
    • Morita T., Mori M., Tatibana M. Regulation of N-acetyl-L-glutamate degradation in mammalian liver. J. Biochem. 1982, 91:563-569.
    • (1982) J. Biochem. , vol.91 , pp. 563-569
    • Morita, T.1    Mori, M.2    Tatibana, M.3
  • 28
    • 0001841295 scopus 로고
    • Multiple assays of the five urea cycle enzymes in human liver homogenates
    • John Wiley and Sons, New York, USA, S. Grisolia, R. Báguena, F. Mayor (Eds.)
    • Nuzum C.T., Snodgrass P.J. Multiple assays of the five urea cycle enzymes in human liver homogenates. The Urea Cycle 1976, 325-349. John Wiley and Sons, New York, USA. S. Grisolia, R. Báguena, F. Mayor (Eds.).
    • (1976) The Urea Cycle , pp. 325-349
    • Nuzum, C.T.1    Snodgrass, P.J.2
  • 29
    • 0022388322 scopus 로고
    • Characterization and derivation of the gene coding for mitochondrial carbamyl phosphate synthetase I of rat
    • Nyunoya H., Broglie K.E., Widgren E.E., Lusty C.J. Characterization and derivation of the gene coding for mitochondrial carbamyl phosphate synthetase I of rat. J. Biol. Chem. 1985, 260:9346-9356.
    • (1985) J. Biol. Chem. , vol.260 , pp. 9346-9356
    • Nyunoya, H.1    Broglie, K.E.2    Widgren, E.E.3    Lusty, C.J.4
  • 30
    • 70450203850 scopus 로고    scopus 로고
    • Structural insight on the control of urea synthesis: identification of the binding site for N-acetyl-L-glutamate, the essential allosteric activator of mitochondrial carbamoyl phosphate synthetase
    • Pekkala S., Martínez A.I., Barcelona B., Gallego J., Bendala E., Yefimenko I., Rubio V., Cervera J. Structural insight on the control of urea synthesis: identification of the binding site for N-acetyl-L-glutamate, the essential allosteric activator of mitochondrial carbamoyl phosphate synthetase. Biochem. J. 2009, 424:211-220.
    • (2009) Biochem. J. , vol.424 , pp. 211-220
    • Pekkala, S.1    Martínez, A.I.2    Barcelona, B.3    Gallego, J.4    Bendala, E.5    Yefimenko, I.6    Rubio, V.7    Cervera, J.8
  • 31
    • 77954106335 scopus 로고    scopus 로고
    • Understanding carbamoyl-phosphate synthetase 1 (CPS1) deficiency by using expression studies and structure-based analysis
    • Pekkala S., Martínez A.I., Barcelona B., Yefimenko I., Finckh U., Rubio V., Cervera J. Understanding carbamoyl-phosphate synthetase 1 (CPS1) deficiency by using expression studies and structure-based analysis. Hum. Mutat. 2010, 31:801-808.
    • (2010) Hum. Mutat. , vol.31 , pp. 801-808
    • Pekkala, S.1    Martínez, A.I.2    Barcelona, B.3    Yefimenko, I.4    Finckh, U.5    Rubio, V.6    Cervera, J.7
  • 32
    • 0024598807 scopus 로고
    • Physical location of the site for N-acetyl-L-glutamate, the allosteric activator of carbamoyl phosphate synthetase, in the 20-kilodalton COOH-terminal domain
    • Rodriguez-Aparicio L.B., Guadalajara A.M., Rubio V. Physical location of the site for N-acetyl-L-glutamate, the allosteric activator of carbamoyl phosphate synthetase, in the 20-kilodalton COOH-terminal domain. Biochemistry 1989, 28:3070-3074.
    • (1989) Biochemistry , vol.28 , pp. 3070-3074
    • Rodriguez-Aparicio, L.B.1    Guadalajara, A.M.2    Rubio, V.3
  • 33
    • 0020807785 scopus 로고
    • Mitochondrial carbamoyl phosphate synthetase activity in the absence of N-acetyl-L-glutamate. Mechanism of activation by this cofactor
    • Rubio V., Britton H.G., Grisolia S. Mitochondrial carbamoyl phosphate synthetase activity in the absence of N-acetyl-L-glutamate. Mechanism of activation by this cofactor. Eur. J. Biochem. 1983, 134:337-343.
    • (1983) Eur. J. Biochem. , vol.134 , pp. 337-343
    • Rubio, V.1    Britton, H.G.2    Grisolia, S.3
  • 34
    • 0019874205 scopus 로고
    • Treating urea cycle defects
    • Rubio V., Grisolía S. Treating urea cycle defects. Nature 1981, 292:496.
    • (1981) Nature , vol.292 , pp. 496
    • Rubio, V.1    Grisolía, S.2
  • 35
    • 0019879719 scopus 로고
    • Carbamoyl phosphate synthetase I of human liver. Purification, some properties and immunological cross-reactivity with the rat liver enzyme
    • Rubio V., Ramponi G., Grisolia S. Carbamoyl phosphate synthetase I of human liver. Purification, some properties and immunological cross-reactivity with the rat liver enzyme. Biochim. Biophys. Acta 1981, 659:150-160.
    • (1981) Biochim. Biophys. Acta , vol.659 , pp. 150-160
    • Rubio, V.1    Ramponi, G.2    Grisolia, S.3
  • 36
    • 0017810934 scopus 로고
    • Role of acetylglutamate in ureotelism. Variations in acetylglutamate level and its possible significance in control of urea synthesis in mammalian liver
    • Shigesada K., Aoyagi K., Tatibana M. Role of acetylglutamate in ureotelism. Variations in acetylglutamate level and its possible significance in control of urea synthesis in mammalian liver. Eur. J. Biochem. 1978, 85:385-391.
    • (1978) Eur. J. Biochem. , vol.85 , pp. 385-391
    • Shigesada, K.1    Aoyagi, K.2    Tatibana, M.3
  • 37
    • 0021112506 scopus 로고
    • Purification of N-acetyl-L-glutamate synthetase from rat liver mitochondria and substrate and activator specificity of the enzyme
    • Sonoda T., Tatibana M. Purification of N-acetyl-L-glutamate synthetase from rat liver mitochondria and substrate and activator specificity of the enzyme. J. Biol. Chem. 1983, 258:9839-9844.
    • (1983) J. Biol. Chem. , vol.258 , pp. 9839-9844
    • Sonoda, T.1    Tatibana, M.2
  • 38
    • 0018968098 scopus 로고
    • Short term regulation of ureagenesis
    • Stewart P.M., Walser M. Short term regulation of ureagenesis. J. Biol. Chem. 1980, 255:5270-5280.
    • (1980) J. Biol. Chem. , vol.255 , pp. 5270-5280
    • Stewart, P.M.1    Walser, M.2
  • 39
    • 0031903133 scopus 로고    scopus 로고
    • Molecular genetic research into carbamoyl-phosphate synthase I: molecular defects and linkage markers
    • Summar M.L. Molecular genetic research into carbamoyl-phosphate synthase I: molecular defects and linkage markers. J. Inherit. Metab. Dis. 1998, 21(Suppl. 1):30-39.
    • (1998) J. Inherit. Metab. Dis. , vol.21 , pp. 30-39
    • Summar, M.L.1
  • 41
    • 84882780128 scopus 로고    scopus 로고
    • The incidence of urea cycle disorders
    • The Members of the Urea Cycle Disorders Consortium (UCDC)
    • Summar M.L., Koelker S., Freedenberg D., Le Mons C., Häberle J., Lee H.S., Kirmse B., The European Registry and Network for Intoxication Type Metabolic Diseases (E-IMD) The incidence of urea cycle disorders. Mol. Genet. Metab. 2013, 110:179-180. The Members of the Urea Cycle Disorders Consortium (UCDC).
    • (2013) Mol. Genet. Metab. , vol.110 , pp. 179-180
    • Summar, M.L.1    Koelker, S.2    Freedenberg, D.3    Le Mons, C.4    Häberle, J.5    Lee, H.S.6    Kirmse, B.7
  • 43
    • 0025327534 scopus 로고
    • N-acetylglutamate content in liver and gut of normal and fasted mice, normal human livers, and livers of individuals with carbamyl phosphate synthetase or ornithine transcarbamylase deficiency
    • Tuchman M., Holzknecht R.A. N-acetylglutamate content in liver and gut of normal and fasted mice, normal human livers, and livers of individuals with carbamyl phosphate synthetase or ornithine transcarbamylase deficiency. Pediatr. Res. 1990, 27:408-412.
    • (1990) Pediatr. Res. , vol.27 , pp. 408-412
    • Tuchman, M.1    Holzknecht, R.A.2
  • 44
    • 0031926212 scopus 로고    scopus 로고
    • Neurodevelopmental outcome of long-term therapy of urea cycle disorders in Japan
    • Uchino T., Endo F., Matsuda I. Neurodevelopmental outcome of long-term therapy of urea cycle disorders in Japan. J. Inherit. Metab. Dis. 1998, 21(Suppl. 1):151-159.
    • (1998) J. Inherit. Metab. Dis. , vol.21 , pp. 151-159
    • Uchino, T.1    Endo, F.2    Matsuda, I.3


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