메뉴 건너뛰기




Volumn 242, Issue , 2016, Pages 120-130

Dissecting quantitative trait variation in the resequencing era: Complementarity of bi-parental, multi-parental and association panels

Author keywords

Fruit quality; Genome wide association; QTL mapping; Resequencing; Tomato

Indexed keywords

CHROMOSOMAL MAPPING; CROSS BREEDING; DNA SEQUENCE; FOUNDER EFFECT; FRUIT; GENETIC VARIATION; GENETICS; GENOTYPE; INBREEDING; PLANT CHROMOSOME; PLANT GENOME; POPULATION GENETICS; PROCEDURES; QUANTITATIVE TRAIT LOCUS; SINGLE NUCLEOTIDE POLYMORPHISM; TOMATO;

EID: 84947016925     PISSN: 01689452     EISSN: 18732259     Source Type: Journal    
DOI: 10.1016/j.plantsci.2015.06.017     Document Type: Article
Times cited : (58)

References (81)
  • 1
    • 0024293278 scopus 로고
    • Resolution of quantitative traits into Mendelian factors by using a complete linkage map of restriction fragment length polymorphisms
    • Paterson A.H., Lander E.S., Hewitt J.D., Peterson S., Lincoln S.E., Tanksley S.D. Resolution of quantitative traits into Mendelian factors by using a complete linkage map of restriction fragment length polymorphisms. Nature 1988, 335:721-726.
    • (1988) Nature , vol.335 , pp. 721-726
    • Paterson, A.H.1    Lander, E.S.2    Hewitt, J.D.3    Peterson, S.4    Lincoln, S.E.5    Tanksley, S.D.6
  • 2
    • 0032005368 scopus 로고    scopus 로고
    • QTL analysis in plants; where are we now?
    • Kearsey M.J., Farquhar A.G.L. QTL analysis in plants; where are we now?. Heredity (Edinb.) 1998, 80:137-142.
    • (1998) Heredity (Edinb.) , vol.80 , pp. 137-142
    • Kearsey, M.J.1    Farquhar, A.G.L.2
  • 3
    • 33847297054 scopus 로고    scopus 로고
    • Genetic architecture of complex traits in plants
    • Holland J.B. Genetic architecture of complex traits in plants. Curr. Opin. Plant Biol. 2007, 10:156-161.
    • (2007) Curr. Opin. Plant Biol. , vol.10 , pp. 156-161
    • Holland, J.B.1
  • 4
    • 36549080467 scopus 로고    scopus 로고
    • An integrated view of quantitative trait variation using tomato interspecific introgression lines
    • Lippman Z.B., Semel Y., Zamir D. An integrated view of quantitative trait variation using tomato interspecific introgression lines. Curr. Opin. Genet. Dev. 2007, 17:545-552.
    • (2007) Curr. Opin. Genet. Dev. , vol.17 , pp. 545-552
    • Lippman, Z.B.1    Semel, Y.2    Zamir, D.3
  • 5
    • 33646382386 scopus 로고    scopus 로고
    • Believe it or not, QTLs are accurate!
    • Price A. Believe it or not, QTLs are accurate!. Trends Plant Sci. 2006, 11:213-216.
    • (2006) Trends Plant Sci. , vol.11 , pp. 213-216
    • Price, A.1
  • 6
    • 84880335495 scopus 로고    scopus 로고
    • The advantages and limitations of trait analysis with GWAS: a review
    • Korte A., Farlow A. The advantages and limitations of trait analysis with GWAS: a review. Plant Methods 2013, 9:29.
    • (2013) Plant Methods , vol.9 , pp. 29
    • Korte, A.1    Farlow, A.2
  • 7
    • 17844404294 scopus 로고    scopus 로고
    • Linkage disequilibrium and association studies in higher plants: present status and future prospects
    • Gupta P.K., Rustgi S., Kulwal P.L. Linkage disequilibrium and association studies in higher plants: present status and future prospects. Plant Mol. Biol. 2005, 57:461-485.
    • (2005) Plant Mol. Biol. , vol.57 , pp. 461-485
    • Gupta, P.K.1    Rustgi, S.2    Kulwal, P.L.3
  • 9
    • 77953811255 scopus 로고    scopus 로고
    • New approaches to population stratification in genome-wide association studies
    • Price A.L., Zaitlen N.A., Reich D., Patterson N. New approaches to population stratification in genome-wide association studies. Nat. Rev. Genet. 2010, 11:459-463.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 459-463
    • Price, A.L.1    Zaitlen, N.A.2    Reich, D.3    Patterson, N.4
  • 10
    • 78649707322 scopus 로고    scopus 로고
    • A coastal cline in sodium accumulation in Arabidopsis thaliana is driven by natural variation of the sodium transporter AtHKT1;1
    • Baxter I., Brazelton J.N., Yu D., Huang Y.S., Lahner B., Yakubova E., et al. A coastal cline in sodium accumulation in Arabidopsis thaliana is driven by natural variation of the sodium transporter AtHKT1;1. PLoS Genet. 2010, 6:e1001193.
    • (2010) PLoS Genet. , vol.6 , pp. e1001193
    • Baxter, I.1    Brazelton, J.N.2    Yu, D.3    Huang, Y.S.4    Lahner, B.5    Yakubova, E.6
  • 11
    • 40849089396 scopus 로고    scopus 로고
    • Genetic design and statistical power of nested association mapping in maize
    • Yu J., Holland J.B., McMullen M.D., Buckler E.S. Genetic design and statistical power of nested association mapping in maize. Genetics 2008, 178:539-551.
    • (2008) Genetics , vol.178 , pp. 539-551
    • Yu, J.1    Holland, J.B.2    McMullen, M.D.3    Buckler, E.S.4
  • 12
    • 68249120152 scopus 로고    scopus 로고
    • A multiparent advanced generation inter-cross to fine-map quantitative traits in Arabidopsis thaliana
    • Kover P.X., Valdar W., Trakalo J., Scarcelli N., Ehrenreich I.M., Purugganan M.D., et al. A multiparent advanced generation inter-cross to fine-map quantitative traits in Arabidopsis thaliana. PLoS Genet. 2009, 5:e1000551.
    • (2009) PLoS Genet. , vol.5 , pp. e1000551
    • Kover, P.X.1    Valdar, W.2    Trakalo, J.3    Scarcelli, N.4    Ehrenreich, I.M.5    Purugganan, M.D.6
  • 13
    • 84878774677 scopus 로고    scopus 로고
    • Multi-parent advanced generation inter-cross (MAGIC) populations in rice: progress and potential for genetics research and breeding
    • Bandillo N., Raghavan C., Muyco P.A., Sevilla M.A.L., Lobina I.T., Dilla-Ermita C.J., et al. Multi-parent advanced generation inter-cross (MAGIC) populations in rice: progress and potential for genetics research and breeding. Rice (N.Y.) 2013, 6:11.
    • (2013) Rice (N.Y.) , vol.6 , pp. 11
    • Bandillo, N.1    Raghavan, C.2    Muyco, P.A.3    Sevilla, M.A.L.4    Lobina, I.T.5    Dilla-Ermita, C.J.6
  • 15
    • 84923367894 scopus 로고    scopus 로고
    • Multi-parent advanced generation inter-cross in barley: high-resolution quantitative trait locus mapping for flowering time as a proof of concept
    • Sannemann W., Huang B.E., Mathew B., Léon J. Multi-parent advanced generation inter-cross in barley: high-resolution quantitative trait locus mapping for flowering time as a proof of concept. Mol. Breed. 2015, 35. 10.1007/s11032-015-0284-7.
    • (2015) Mol. Breed. , vol.35
    • Sannemann, W.1    Huang, B.E.2    Mathew, B.3    Léon, J.4
  • 16
    • 84928183520 scopus 로고    scopus 로고
    • Potential of a tomato MAGIC population to decipher the genetic control of quantitative traits and detect causal variants in the resequencing era
    • Pascual L., Desplat N., Huang B.E., Desgroux A., Bruguier L., Bouchet J.-P., et al. Potential of a tomato MAGIC population to decipher the genetic control of quantitative traits and detect causal variants in the resequencing era. Plant Biotechnol. J. 2014, 10.1111/pbi.12282.
    • (2014) Plant Biotechnol. J.
    • Pascual, L.1    Desplat, N.2    Huang, B.E.3    Desgroux, A.4    Bruguier, L.5    Bouchet, J.-P.6
  • 17
    • 41149121474 scopus 로고    scopus 로고
    • From mutations to MAGIC: resources for gene discovery, validation and delivery in crop plants
    • Cavanagh C., Morell M., Mackay I., Powell W. From mutations to MAGIC: resources for gene discovery, validation and delivery in crop plants. Curr. Opin. Plant Biol. 2008, 11:215-221.
    • (2008) Curr. Opin. Plant Biol. , vol.11 , pp. 215-221
    • Cavanagh, C.1    Morell, M.2    Mackay, I.3    Powell, W.4
  • 18
    • 84887606456 scopus 로고    scopus 로고
    • Combined linkage and linkage disequilibrium QTL mapping in multiple families of maize (Zea mays L.) line crosses highlights complementarities between models based on parental haplotype and single locus polymorphism
    • Bardol N., Ventelon M., Mangin B., Jasson S., Loywick V., Couton F., et al. Combined linkage and linkage disequilibrium QTL mapping in multiple families of maize (Zea mays L.) line crosses highlights complementarities between models based on parental haplotype and single locus polymorphism. Theor. Appl. Genet. 2013, 126:2717-2736.
    • (2013) Theor. Appl. Genet. , vol.126 , pp. 2717-2736
    • Bardol, N.1    Ventelon, M.2    Mangin, B.3    Jasson, S.4    Loywick, V.5    Couton, F.6
  • 19
    • 84861340306 scopus 로고    scopus 로고
    • QTL detection power of multi-parental RIL populations in Arabidopsis thaliana
    • Klasen J.R., Piepho H.-P., Stich B. QTL detection power of multi-parental RIL populations in Arabidopsis thaliana. Heredity (Edinb.) 2012, 108:626-632.
    • (2012) Heredity (Edinb.) , vol.108 , pp. 626-632
    • Klasen, J.R.1    Piepho, H.-P.2    Stich, B.3
  • 20
    • 84887396422 scopus 로고    scopus 로고
    • Whole genome resequencing in tomato reveals variation associated with introgression and breeding events
    • Causse M., Desplat N., Pascual L., Le Paslier M.-C., Sauvage C., Bauchet G., et al. Whole genome resequencing in tomato reveals variation associated with introgression and breeding events. BMC Genomics 2013, 14:791.
    • (2013) BMC Genomics , vol.14 , pp. 791
    • Causse, M.1    Desplat, N.2    Pascual, L.3    Le Paslier, M.-C.4    Sauvage, C.5    Bauchet, G.6
  • 21
    • 2942690153 scopus 로고    scopus 로고
    • Genetic regulation of fruit development and ripening
    • Giovannoni J.J. Genetic regulation of fruit development and ripening. Plant Cell 2004, 16:170-180.
    • (2004) Plant Cell , vol.16 , pp. 170-180
    • Giovannoni, J.J.1
  • 22
    • 0034095037 scopus 로고    scopus 로고
    • Efficiency of RFLP, RAPD, and AFLP markers for the construction of an intraspecific map of the tomato genome
    • Saliba-Colombani V., Causse M., Gervais L., Philouze J. Efficiency of RFLP, RAPD, and AFLP markers for the construction of an intraspecific map of the tomato genome. Genome 2000, 43:29-40.
    • (2000) Genome , vol.43 , pp. 29-40
    • Saliba-Colombani, V.1    Causse, M.2    Gervais, L.3    Philouze, J.4
  • 24
    • 0034617236 scopus 로고    scopus 로고
    • Fw2.2: a quantitative trait locus key to the evolution of tomato fruit size
    • Frary A., Nesbitt T.C., Grandillo S., van der Knaap E., Cong B., Liu J.P., et al. fw2.2: a quantitative trait locus key to the evolution of tomato fruit size. Science 2000, 289:85-88.
    • (2000) Science , vol.289 , pp. 85-88
    • Frary, A.1    Nesbitt, T.C.2    Grandillo, S.3    van der Knaap, E.4    Cong, B.5    Liu, J.P.6
  • 25
    • 0034712852 scopus 로고    scopus 로고
    • A recombination hotspot delimits a wild-species quantitative trait locus for tomato sugar content to 484bp within an invertase gene
    • Fridman E., Pleban T., Zamir D. A recombination hotspot delimits a wild-species quantitative trait locus for tomato sugar content to 484bp within an invertase gene. Proc. Natl. Acad. Sci. U. S. A. 2000, 97:4718-4723.
    • (2000) Proc. Natl. Acad. Sci. U. S. A. , vol.97 , pp. 4718-4723
    • Fridman, E.1    Pleban, T.2    Zamir, D.3
  • 26
    • 84863693752 scopus 로고    scopus 로고
    • The tomato genome sequence provides insights into fleshy fruit evolution
    • Tomato-Genome-Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature 2012, 485:635-641.
    • (2012) Nature , vol.485 , pp. 635-641
  • 27
    • 85027940343 scopus 로고    scopus 로고
    • Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole-genome sequencing
    • Aflitos S., Schijlen E., de Jong H. Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole-genome sequencing. Plant J. 2014, 80:136-148.
    • (2014) Plant J. , vol.80 , pp. 136-148
    • Aflitos, S.1    Schijlen, E.2    de Jong, H.3
  • 28
    • 84908689021 scopus 로고    scopus 로고
    • Genomic analyses provide insights into the history of tomato breeding
    • Lin T., Zhu G., Zhang J., Xu X., Yu Q., Zheng Z., et al. Genomic analyses provide insights into the history of tomato breeding. Nat. Genet. 2014, 10.1038/ng.3117.
    • (2014) Nat. Genet.
    • Lin, T.1    Zhu, G.2    Zhang, J.3    Xu, X.4    Yu, Q.5    Zheng, Z.6
  • 29
    • 84922395331 scopus 로고    scopus 로고
    • The genome of the stress-tolerant wild tomato species Solanum pennellii
    • Bolger A., Scossa F., Bolger M.E., Lanz C., Maumus F., Tohge T., et al. The genome of the stress-tolerant wild tomato species Solanum pennellii. Nat. Genet. 2014, 46:1034-1038.
    • (2014) Nat. Genet. , vol.46 , pp. 1034-1038
    • Bolger, A.1    Scossa, F.2    Bolger, M.E.3    Lanz, C.4    Maumus, F.5    Tohge, T.6
  • 30
    • 84863672047 scopus 로고    scopus 로고
    • Development of a large SNP genotyping array and generation of high-density genetic maps in tomato
    • Sim S.C., Durstewitz G., Plieske J., Wieseke R., Ganal M.W., Van Deynze A., et al. Development of a large SNP genotyping array and generation of high-density genetic maps in tomato. PLoS ONE 2012, 7:e40563.
    • (2012) PLoS ONE , vol.7 , pp. e40563
    • Sim, S.C.1    Durstewitz, G.2    Plieske, J.3    Wieseke, R.4    Ganal, M.W.5    Van Deynze, A.6
  • 31
    • 84866645938 scopus 로고    scopus 로고
    • High-density SNP genotyping of tomato (Solanum lycopersicum L.) reveals patterns of genetic variation due to breeding
    • Sim S.-C., Van Deynze A., Stoffel K., Douches D.S., Zarka D., Ganal M.W., et al. High-density SNP genotyping of tomato (Solanum lycopersicum L.) reveals patterns of genetic variation due to breeding. PLoS ONE 2012, 7:e45520.
    • (2012) PLoS ONE , vol.7 , pp. e45520
    • Sim, S.-C.1    Van Deynze, A.2    Stoffel, K.3    Douches, D.S.4    Zarka, D.5    Ganal, M.W.6
  • 32
    • 84903589651 scopus 로고    scopus 로고
    • Genome-wide association in tomato reveals 44 candidate loci for fruit metabolic traits
    • Sauvage C., Segura V., Bauchet G., Stevens R., Do P.T., Nikoloski Z., et al. Genome-wide association in tomato reveals 44 candidate loci for fruit metabolic traits. Plant Physiol. 2014, 165:1120-1132.
    • (2014) Plant Physiol. , vol.165 , pp. 1120-1132
    • Sauvage, C.1    Segura, V.2    Bauchet, G.3    Stevens, R.4    Do, P.T.5    Nikoloski, Z.6
  • 34
    • 0035095741 scopus 로고    scopus 로고
    • Genetic analysis of organoleptic quality in fresh market tomato. 1. Mapping QTLs for physical and chemical traits
    • Saliba-Colombani V., Causse M., Langlois D., Philouze J., Buret M. Genetic analysis of organoleptic quality in fresh market tomato. 1. Mapping QTLs for physical and chemical traits. Theor. Appl. Genet. 2001, 102:259-272.
    • (2001) Theor. Appl. Genet. , vol.102 , pp. 259-272
    • Saliba-Colombani, V.1    Causse, M.2    Langlois, D.3    Philouze, J.4    Buret, M.5
  • 36
    • 0024508964 scopus 로고
    • Mapping Mendelian factors underlying quantitative traits using Rflp linkage maps
    • Lander E., Botstein D. Mapping Mendelian factors underlying quantitative traits using Rflp linkage maps. Genetics 1989, 121:185-199.
    • (1989) Genetics , vol.121 , pp. 185-199
    • Lander, E.1    Botstein, D.2
  • 38
    • 79951983365 scopus 로고    scopus 로고
    • R/mpMap: a computational platform for the genetic analysis of multiparent recombinant inbred lines
    • Huang B.E., George A.W. R/mpMap: a computational platform for the genetic analysis of multiparent recombinant inbred lines. Bioinformatics 2011, 27:727-729.
    • (2011) Bioinformatics , vol.27 , pp. 727-729
    • Huang, B.E.1    George, A.W.2
  • 39
    • 84874320505 scopus 로고    scopus 로고
    • Phenotypic diversity and association mapping for fruit quality traits in cultivated tomato and related species
    • Xu J., Ranc N., Muños S., Rolland S., Bouchet J.P., Desplat N., et al. Phenotypic diversity and association mapping for fruit quality traits in cultivated tomato and related species. Theor. Appl. Genet. 2013, 126:567-581.
    • (2013) Theor. Appl. Genet. , vol.126 , pp. 567-581
    • Xu, J.1    Ranc, N.2    Muños, S.3    Rolland, S.4    Bouchet, J.P.5    Desplat, N.6
  • 40
    • 84863672047 scopus 로고    scopus 로고
    • Development of a large SNP genotyping array and generation of high-density genetic maps in tomato
    • Sim S.-C., Durstewitz G., Plieske J., Wieseke R., Ganal M.W., Van Deynze A., et al. Development of a large SNP genotyping array and generation of high-density genetic maps in tomato. PLoS ONE 2012, 7:e40563.
    • (2012) PLoS ONE , vol.7 , pp. e40563
    • Sim, S.-C.1    Durstewitz, G.2    Plieske, J.3    Wieseke, R.4    Ganal, M.W.5    Van Deynze, A.6
  • 41
    • 0036899010 scopus 로고    scopus 로고
    • SPAGeDI. A versatile computer program to analyse spatial genetic structure at the individual or population levels
    • Hardy O.J., Vekemans X. SPAGeDI. A versatile computer program to analyse spatial genetic structure at the individual or population levels. Mol. Ecol. Notes 2002, 2:618-620.
    • (2002) Mol. Ecol. Notes , vol.2 , pp. 618-620
    • Hardy, O.J.1    Vekemans, X.2
  • 42
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies
    • Falush D., Stephens M., Pritchard J.K. Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 2003, 164:1567-1587.
    • (2003) Genetics , vol.164 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 43
    • 21244479740 scopus 로고    scopus 로고
    • Detecting the number of clusters of individuals using the software structure: a simulation study
    • Evanno G., Regnaut S., Goudet J. Detecting the number of clusters of individuals using the software structure: a simulation study. Mol. Ecol. 2005, 14:2611-2620.
    • (2005) Mol. Ecol. , vol.14 , pp. 2611-2620
    • Evanno, G.1    Regnaut, S.2    Goudet, J.3
  • 44
    • 84862991434 scopus 로고    scopus 로고
    • An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations
    • Segura V., Vilhjálmsson B.J., Platt A., Korte A., Seren Ü., Long Q., et al. An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations. Nat. Genet. 2012, 44:825-830.
    • (2012) Nat. Genet. , vol.44 , pp. 825-830
    • Segura, V.1    Vilhjálmsson, B.J.2    Platt, A.3    Korte, A.4    Seren, Ü.5    Long, Q.6
  • 45
    • 84885894954 scopus 로고    scopus 로고
    • GnpIS: an information system to integrate genetic and genomic data from plants and fungi
    • bat058
    • Steinbach D., Alaux M., Amselem J., Choisne N., Durand S., Flores R., et al. GnpIS: an information system to integrate genetic and genomic data from plants and fungi. Database (Oxford) 2013, 2013:bat058.
    • (2013) Database (Oxford) , vol.2013
    • Steinbach, D.1    Alaux, M.2    Amselem, J.3    Choisne, N.4    Durand, S.5    Flores, R.6
  • 46
    • 33746513103 scopus 로고    scopus 로고
    • A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening
    • Manning K., Tör M., Poole M., Hong Y., Thompson A.J., King G.J., et al. A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening. Nat. Genet. 2006, 38:948-952.
    • (2006) Nat. Genet. , vol.38 , pp. 948-952
    • Manning, K.1    Tör, M.2    Poole, M.3    Hong, Y.4    Thompson, A.J.5    King, G.J.6
  • 47
    • 84857238825 scopus 로고    scopus 로고
    • Novel measures of linkage disequilibrium that correct the bias due to population structure and relatedness
    • Mangin B., Siberchicot A., Nicolas S., Doligez A., This P., Cierco-Ayrolles C. Novel measures of linkage disequilibrium that correct the bias due to population structure and relatedness. Heredity (Edinb.) 2012, 108:285-291.
    • (2012) Heredity (Edinb.) , vol.108 , pp. 285-291
    • Mangin, B.1    Siberchicot, A.2    Nicolas, S.3    Doligez, A.4    This, P.5    Cierco-Ayrolles, C.6
  • 48
    • 79961172519 scopus 로고    scopus 로고
    • Tomato fruit weight 11.3 maps close to fasciated on the bottom of chromosome 11
    • Huang Z., van der Knaap E. Tomato fruit weight 11.3 maps close to fasciated on the bottom of chromosome 11. Theor. Appl. Genet. 2011, 123:465-474.
    • (2011) Theor. Appl. Genet. , vol.123 , pp. 465-474
    • Huang, Z.1    van der Knaap, E.2
  • 50
    • 78751678446 scopus 로고    scopus 로고
    • The genetic architecture of grain yield and related traits in Zea maize L. revealed by comparing intermated and conventional populations
    • Huang Y.-F., Madur D., Combes V., Ky C.L., Coubriche D., Jamin P., et al. The genetic architecture of grain yield and related traits in Zea maize L. revealed by comparing intermated and conventional populations. Genetics 2010, 186:395-404.
    • (2010) Genetics , vol.186 , pp. 395-404
    • Huang, Y.-F.1    Madur, D.2    Combes, V.3    Ky, C.L.4    Coubriche, D.5    Jamin, P.6
  • 53
    • 84924365586 scopus 로고    scopus 로고
    • The genetic and mechanistic basis for variation in gene regulation
    • Pai A.A., Pritchard J.K., Gilad Y. The genetic and mechanistic basis for variation in gene regulation. PLoS Genet. 2015, 11:e1004857.
    • (2015) PLoS Genet. , vol.11 , pp. e1004857
    • Pai, A.A.1    Pritchard, J.K.2    Gilad, Y.3
  • 54
    • 58149347486 scopus 로고    scopus 로고
    • Genome-wide association studies: potential next steps on a genetic journey
    • McCarthy M.I., Hirschhorn J.N. Genome-wide association studies: potential next steps on a genetic journey. Hum. Mol. Genet. 2008, 17:157-165.
    • (2008) Hum. Mol. Genet. , vol.17 , pp. 157-165
    • McCarthy, M.I.1    Hirschhorn, J.N.2
  • 56
    • 84901364838 scopus 로고    scopus 로고
    • Recovering power in association mapping panels with variable levels of linkage disequilibrium
    • Rincent R., Moreau L., Monod H., Kuhn E., Melchinger A.E., Malvar R.A., et al. Recovering power in association mapping panels with variable levels of linkage disequilibrium. Genetics 2014, 197:375-387.
    • (2014) Genetics , vol.197 , pp. 375-387
    • Rincent, R.1    Moreau, L.2    Monod, H.3    Kuhn, E.4    Melchinger, A.E.5    Malvar, R.A.6
  • 57
    • 84911954284 scopus 로고    scopus 로고
    • A genome-wide identification of chromosomal regions determining nitrogen use efficiency components in wheat (Triticum aestivum L.)
    • Cormier F., Le Gouis J., Dubreuil P., Lafarge S., Praud S. A genome-wide identification of chromosomal regions determining nitrogen use efficiency components in wheat (Triticum aestivum L.). Theor. Appl. Genet. 2014, 127:2679-2693.
    • (2014) Theor. Appl. Genet. , vol.127 , pp. 2679-2693
    • Cormier, F.1    Le Gouis, J.2    Dubreuil, P.3    Lafarge, S.4    Praud, S.5
  • 58
    • 84867244523 scopus 로고    scopus 로고
    • Maximizing the reliability of genomic selection by optimizing the calibration set of reference individuals: comparison of methods in two diverse groups of maize inbreds (Zea mays L.)
    • Rincent R., Laloë D., Nicolas S., Altmann T., Brunel D., Revilla P., et al. Maximizing the reliability of genomic selection by optimizing the calibration set of reference individuals: comparison of methods in two diverse groups of maize inbreds (Zea mays L.). Genetics 2012, 192:715-728.
    • (2012) Genetics , vol.192 , pp. 715-728
    • Rincent, R.1    Laloë, D.2    Nicolas, S.3    Altmann, T.4    Brunel, D.5    Revilla, P.6
  • 59
    • 79952837514 scopus 로고    scopus 로고
    • Mapping and linkage disequilibrium analysis with a genome-wide collection of SNPs that detect polymorphism in cultivated tomato
    • Robbins M.D., Sim S.C., Yang W., Van Deynze A., van der Knaap E., Joobeur T., et al. Mapping and linkage disequilibrium analysis with a genome-wide collection of SNPs that detect polymorphism in cultivated tomato. J. Exp. Bot. 2011, 62:1831-1845.
    • (2011) J. Exp. Bot. , vol.62 , pp. 1831-1845
    • Robbins, M.D.1    Sim, S.C.2    Yang, W.3    Van Deynze, A.4    van der Knaap, E.5    Joobeur, T.6
  • 60
    • 34447276219 scopus 로고    scopus 로고
    • Plant domestication, a unique opportunity to identify the genetic basis of adaptation
    • Ross-Ibarra J., Morrell P.L., Gaut B.S. Plant domestication, a unique opportunity to identify the genetic basis of adaptation. Proc. Natl. Acad. Sci. U. S. A. 2007, 104(Suppl.):8641-8648.
    • (2007) Proc. Natl. Acad. Sci. U. S. A. , vol.104 , pp. 8641-8648
    • Ross-Ibarra, J.1    Morrell, P.L.2    Gaut, B.S.3
  • 61
    • 78649581906 scopus 로고    scopus 로고
    • Performance of single nucleotide polymorphisms versus haplotypes for genome-wide association analysis in barley
    • Lorenz A.J., Hamblin M.T., Jannink J.-L. Performance of single nucleotide polymorphisms versus haplotypes for genome-wide association analysis in barley. PLoS ONE 2010, 5:e14079.
    • (2010) PLoS ONE , vol.5 , pp. e14079
    • Lorenz, A.J.1    Hamblin, M.T.2    Jannink, J.-L.3
  • 62
    • 84921416921 scopus 로고    scopus 로고
    • Genome-wide association studies in elite varieties of German winter barley using single-marker and haplotype-based methods
    • Gawenda I., Thorwarth P., Günther T., Ordon F., Schmid K.J. Genome-wide association studies in elite varieties of German winter barley using single-marker and haplotype-based methods. Plant Breed. 2015, 134:28-39.
    • (2015) Plant Breed. , vol.134 , pp. 28-39
    • Gawenda, I.1    Thorwarth, P.2    Günther, T.3    Ordon, F.4    Schmid, K.J.5
  • 63
    • 77953264996 scopus 로고    scopus 로고
    • Linkage and association mapping of Arabidopsis thaliana flowering time in nature
    • Brachi B., Faure N., Horton M., Flahauw E., Vazquez A., Nordborg M., et al. Linkage and association mapping of Arabidopsis thaliana flowering time in nature. PLoS Genet. 2010, 6:e1000940.
    • (2010) PLoS Genet. , vol.6 , pp. e1000940
    • Brachi, B.1    Faure, N.2    Horton, M.3    Flahauw, E.4    Vazquez, A.5    Nordborg, M.6
  • 64
    • 0028813264 scopus 로고
    • The molecular basis of quantitative genetic variation in natural populations
    • Mitchell-Olds T. The molecular basis of quantitative genetic variation in natural populations. Trends Ecol. Evol. 1995, 10:324-328.
    • (1995) Trends Ecol. Evol. , vol.10 , pp. 324-328
    • Mitchell-Olds, T.1
  • 65
    • 38549103015 scopus 로고    scopus 로고
    • Combining population genomics and quantitative genetics: finding the genes underlying ecologically important traits
    • Stinchcombe J.R., Hoekstra H.E. Combining population genomics and quantitative genetics: finding the genes underlying ecologically important traits. Heredity (Edinb.) 2008, 100(Suppl.):158-170.
    • (2008) Heredity (Edinb.) , vol.100 , pp. 158-170
    • Stinchcombe, J.R.1    Hoekstra, H.E.2
  • 66
    • 77957376816 scopus 로고    scopus 로고
    • Complex-trait analysis in plants
    • Mitchell-Olds T. Complex-trait analysis in plants. Genome Biol. 2010, 11:113.
    • (2010) Genome Biol. , vol.11 , pp. 113
    • Mitchell-Olds, T.1
  • 67
    • 77953233453 scopus 로고    scopus 로고
    • Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines
    • Atwell S., Huang Y.S., Vilhjálmsson B.J., Willems G., Horton M., Li Y., et al. Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature 2010, 465:627-631.
    • (2010) Nature , vol.465 , pp. 627-631
    • Atwell, S.1    Huang, Y.S.2    Vilhjálmsson, B.J.3    Willems, G.4    Horton, M.5    Li, Y.6
  • 68
    • 84867402680 scopus 로고    scopus 로고
    • Family-based linkage and association mapping reveals novel genes affecting Plum pox virus infection in Arabidopsis thaliana
    • Pagny G., Paulstephenraj P.S., Poque S., Sicard O., Cosson P., Eyquard J.-P., et al. Family-based linkage and association mapping reveals novel genes affecting Plum pox virus infection in Arabidopsis thaliana. New Phytol. 2012, 196:873-886.
    • (2012) New Phytol. , vol.196 , pp. 873-886
    • Pagny, G.1    Paulstephenraj, P.S.2    Poque, S.3    Sicard, O.4    Cosson, P.5    Eyquard, J.-P.6
  • 69
    • 84875444971 scopus 로고    scopus 로고
    • Genotyping-by-sequencing for plant breeding and genetics
    • Poland J.A., Rife T.W. Genotyping-by-sequencing for plant breeding and genetics. Plant Genome J. 2012, 5:92-102.
    • (2012) Plant Genome J. , vol.5 , pp. 92-102
    • Poland, J.A.1    Rife, T.W.2
  • 72
    • 84865125803 scopus 로고    scopus 로고
    • Biomercator V3: an upgrade of genetic map compilation and quantitative trait loci meta-analysis algorithms
    • Sosnowski O., Charcosset A., Joets J. Biomercator V3: an upgrade of genetic map compilation and quantitative trait loci meta-analysis algorithms. Bioinformatics 2012, 28:2082-2083.
    • (2012) Bioinformatics , vol.28 , pp. 2082-2083
    • Sosnowski, O.1    Charcosset, A.2    Joets, J.3
  • 73
    • 67650400640 scopus 로고    scopus 로고
    • Improved resolution in the position of drought-related QTLs in a single mapping population of rice by meta-analysis
    • Khowaja F.S., Norton G.J., Courtois B., Price A.H. Improved resolution in the position of drought-related QTLs in a single mapping population of rice by meta-analysis. BMC Genomics 2009, 10:276.
    • (2009) BMC Genomics , vol.10 , pp. 276
    • Khowaja, F.S.1    Norton, G.J.2    Courtois, B.3    Price, A.H.4
  • 74
    • 84879341768 scopus 로고    scopus 로고
    • Where have all the crop phenotypes gone?
    • Zamir D. Where have all the crop phenotypes gone?. PLoS Biol. 2013, 11:e1001595.
    • (2013) PLoS Biol. , vol.11 , pp. e1001595
    • Zamir, D.1
  • 77
    • 39849095692 scopus 로고    scopus 로고
    • Identifying the molecular basis of QTLs: eQTLs add a new dimension
    • Hansen B.G., Halkier B.A., Kliebenstein D.J. Identifying the molecular basis of QTLs: eQTLs add a new dimension. Trends Plant Sci. 2008, 13:72-77.
    • (2008) Trends Plant Sci. , vol.13 , pp. 72-77
    • Hansen, B.G.1    Halkier, B.A.2    Kliebenstein, D.J.3
  • 80
    • 0035350685 scopus 로고    scopus 로고
    • Mapping quantitative trait loci in plants: uses and caveats for evolutionary biology
    • Mauricio R. Mapping quantitative trait loci in plants: uses and caveats for evolutionary biology. Nat. Rev. Genet. 2001, 2:370-381.
    • (2001) Nat. Rev. Genet. , vol.2 , pp. 370-381
    • Mauricio, R.1
  • 81
    • 84873587727 scopus 로고    scopus 로고
    • Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening
    • Zhong S., Fei Z., Chen Y.-R., Zheng Y., Huang M., Vrebalov J., et al. Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening. Nat. Biotechnol. 2013, 31:154-159.
    • (2013) Nat. Biotechnol. , vol.31 , pp. 154-159
    • Zhong, S.1    Fei, Z.2    Chen, Y.-R.3    Zheng, Y.4    Huang, M.5    Vrebalov, J.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.