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Volumn 61, Issue 6, 2015, Pages 959-965

Using the birdtree.org website to obtain robust phylogenies for avian comparative studies: A primer

Author keywords

Birds; BirdTree; Comparative method; PGLM; PGLS; Phylogenetic uncertainty

Indexed keywords


EID: 84946590097     PISSN: 16745507     EISSN: None     Source Type: Journal    
DOI: 10.1093/czoolo/61.6.959     Document Type: Article
Times cited : (163)

References (42)
  • 1
    • 77954623472 scopus 로고    scopus 로고
    • Phylogenetic targeting of research effort in evolutionary biology
    • Arnold C, Nunn CL, 2010. Phylogenetic targeting of research effort in evolutionary biology. Am. Nat. 176: 601-612
    • (2010) Am. Nat , vol.176 , pp. 601-612
    • Arnold, C.1    Nunn, C.L.2
  • 2
    • 77954574612 scopus 로고    scopus 로고
    • The 10kTrees website: A new online resource for primate phylogeny
    • Arnold C, Matthews LJ, Nunn CL, 2010. The 10kTrees website: A new online resource for primate phylogeny. Evol. Anthropol. 19: 114-118.
    • (2010) Evol. Anthropol , vol.19 , pp. 114-118
    • Arnold, C.1    Matthews, L.J.2    Nunn, C.L.3
  • 5
    • 84957041360 scopus 로고    scopus 로고
    • An introduction to supertree con- struction (And partitioned phylogenetic analyses) with a view toward the distinction between gene trees and species trees
    • : Garamszegi LZ ed., Berlin: Springer-Verlag
    • Bininda-Emonds ORP, 2014. An introduction to supertree con- struction (and partitioned phylogenetic analyses) with a view toward the distinction between gene trees and species trees. In: Garamszegi LZ ed. Modern Phylogenetic Comparative Meth- ods and Their Application in Evolutionary Biology: Theory and Practice. Berlin: Springer-Verlag, 49-76.
    • (2014) Modern Phylogenetic Comparative Meth- Ods and Their Application in Evolutionary Biology: Theory and Practice , pp. 49-76
    • Bininda-Emonds, O.1
  • 6
    • 78650752639 scopus 로고    scopus 로고
    • AIC model se- lection and multimodel inference in behavioral ecology: Some background, observations, and comparisons
    • Burnham KP, Anderson DR, Huyvaert KP, 2011. AIC model se- lection and multimodel inference in behavioral ecology: Some background, observations, and comparisons. Behav. Ecol. So- ciobiol. 65: 23-35.
    • (2011) Behav. Ecol. So- Ciobiol , vol.65 , pp. 23-35
    • Burnham, K.P.1    Erson, D.R.2    Huyvaert, K.P.3
  • 7
    • 84862764044 scopus 로고    scopus 로고
    • Bayesian models for comparative analysis integrating phy- logenetic uncertainty
    • de Villemereuil P, Wells JA, Edwards RD, Blomberg SP, 2012.Bayesian models for comparative analysis integrating phy- logenetic uncertainty. BMC Evol. Biol. 12: 102.
    • (2012) BMC Evol. Biol , vol.12 , pp. 102
    • De Villemereuil, P.1    Wells, J.A.2    Edwards, R.D.3    Blomberg, S.P.4
  • 8
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond A, Rambaut A, 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7: 214.
    • (2007) BMC Evol. Biol , vol.7 , pp. 214
    • Drummond, A.1    Rambaut, A.2
  • 9
    • 33845585115 scopus 로고    scopus 로고
    • Diversification of Neoaves: Integration of molecular sequence data and fossils
    • Ericson PG, Anderson CL, Britton T, Elzanowski A, Johansson US et al., 2006. Diversification of Neoaves: Integration of molecular sequence data and fossils. Biol. Lett. 2: 543-547.
    • (2006) Biol. Lett , vol.2 , pp. 543-547
    • Ericson, P.G.1    Erson, C.L.2    Britton, T.3    Elzanowski, A.4    Johansson, U.S.5
  • 10
    • 0022203256 scopus 로고
    • Phylogenies and the comparative method
    • Felsenstein J, 1985. Phylogenies and the comparative method. Am. Nat. 125: 1-15.
    • (1985) Am. Nat , vol.125 , pp. 1-15
    • Felsenstein, J.1
  • 11
    • 0036920097 scopus 로고    scopus 로고
    • Phylogenetic analysis and comparative data: A test and review of evidence
    • Freckleton RP, Harvey PH, Pagel M, 2002. Phylogenetic analysis and comparative data: A test and review of evidence. Am. Nat.160: 712-726.
    • (2002) Am. Nat , vol.160 , pp. 712-726
    • Freckleton, R.P.1    Harvey, P.H.2    Pagel, M.3
  • 13
    • 77956637684 scopus 로고    scopus 로고
    • Effects of sample size and intraspecific variation in phylogenetic comparative studies: A meta-analytic review
    • Garamszegi LZ, Møller AP, 2010. Effects of sample size and intraspecific variation in phylogenetic comparative studies: A meta-analytic review. Biol. Rev. 85: 797-805.
    • (2010) Biol. Rev , vol.85 , pp. 797-805
    • Garamszegi, L.Z.1    Møller, A.P.2
  • 16
    • 0024975994 scopus 로고
    • The phylogenetic regression
    • Grafen, A, 1989. The phylogenetic regression. Phil. Trans. R. Soc. Lond. B 326: 119-157.
    • (1989) Phil. Trans. R. Soc. Lond. B , vol.326 , pp. 119-157
    • Grafen, A.1
  • 17
    • 46449135061 scopus 로고    scopus 로고
    • A phylogenomic study of birds reveals their evolution-ary history
    • Hackett SJ, Kimball RT, Reddy S, Bowie RC, Braun EL et al., 2008. A phylogenomic study of birds reveals their evolution-ary history. Science 320: 1763-1768.
    • (2008) Science , vol.320 , pp. 1763-1768
    • Hackett, S.J.1    Kimball, R.T.2    Reddy, S.3    Bowie, R.C.4    Braun, E.L.5
  • 19
    • 53849131729 scopus 로고    scopus 로고
    • A justification for reporting the majority-rule consensus tree in Bayesian phy- logenetics
    • Holder MT, Sukumaran J, Lewis PO, 2008. A justification for reporting the majority-rule consensus tree in Bayesian phy- logenetics. Syst. Biol. 57: 814-821.
    • (2008) Syst. Biol , vol.57 , pp. 814-821
    • Holder, M.T.1    Sukumaran, J.2    Lewis, P.O.3
  • 20
    • 0037965118 scopus 로고    scopus 로고
    • Detecting correlation between characters in a comparative analysis with uncertain phylogeny
    • Huelsenbeck JP, Rannala B, 2003. Detecting correlation between characters in a comparative analysis with uncertain phylogeny. Evolution 57: 1237-1247.
    • (2003) Evolution , vol.57 , pp. 1237-1247
    • Huelsenbeck, J.P.1    Rannala, B.2
  • 22
    • 33645098390 scopus 로고    scopus 로고
    • A phylogenetic supertree of oscine passerine birds (Aves: Passeri
    • Jønsson KA, Fjeldså J, 2006. A phylogenetic supertree of oscine passerine birds (Aves: Passeri). Zool. Scripta 35: 149-186.
    • (2006) Zool. Scripta , vol.35 , pp. 149-186
    • Jønsson, K.A.1    Fjeldså, J.2
  • 23
    • 17844374363 scopus 로고    scopus 로고
    • Mortality costs of sexual selection and parental care in natural populations of birds
    • Liker A, Székely T, 2005. Mortality costs of sexual selection and parental care in natural populations of birds. Evolution 59: 890-897.
    • (2005) Evolution , vol.59 , pp. 890-897
    • Liker, A.1    Székely, T.2
  • 24
    • 84875848100 scopus 로고    scopus 로고
    • The evolution of sex roles in birds is related to adult sex ratio
    • Liker A, Freckleton RP, Szekely T, 2013. The evolution of sex roles in birds is related to adult sex ratio. Nature Comm. 4: 1587.
    • (2013) Nature Comm , vol.4 , pp. 1587
    • Liker, A.1    Freckleton, R.P.2    Szekely, T.3
  • 25
    • 0000989477 scopus 로고
    • A method for testing the correlated evolution of two binary characters: Are gains or losses concentrated on certain branches of a phylogenetic tree?
    • Maddison WP, 1990. A method for testing the correlated evolution of two binary characters: Are gains or losses concentrated on certain branches of a phylogenetic tree? Evolution 44: 539- 557.
    • (1990) Evolution , vol.44
    • Maddison, W.P.1
  • 26
    • 0034614924 scopus 로고    scopus 로고
    • Testing character correlation using pairwise comparisons on a phylogeny
    • Maddison WP, 2000. Testing character correlation using pairwise comparisons on a phylogeny. J. Theor. Biol. 202: 195-204.
    • (2000) J. Theor. Biol , vol.202 , pp. 195-204
    • Maddison, W.P.1
  • 27
    • 0030021366 scopus 로고    scopus 로고
    • Conducting phylogenetic comparative analyses
    • Martins EP, 1996. Conducting phylogenetic comparative analyses when the phylogeny is not known. Evolution 50: 12-22.
    • (1996) Evolution , vol.50 , pp. 12-22
    • Martins, E.P.1
  • 28
    • 0030619995 scopus 로고    scopus 로고
    • Phylogenies and the comparative method: A general approach to incorporating phylogenetic in- formation into the analysis of interspecific data
    • Martins EP, Hansen TF, 1997 Phylogenies and the comparative method: A general approach to incorporating phylogenetic in- formation into the analysis of interspecific data. Am. Nat. 149: 646-667
    • (1997) Am. Nat , vol.149 , pp. 646-667
    • Martins, E.P.1    Hansen, T.F.2
  • 29
    • 0026499603 scopus 로고
    • A pairwise comparative method as illustrated by copulation frequency in birds
    • Møller AP, Birkhead TR, 1992. A pairwise comparative method as illustrated by copulation frequency in birds. Am. Nat. 139: 644-656.
    • (1992) Am. Nat , vol.139 , pp. 644-656
    • Møller, A.P.1    Birkhead, T.R.2
  • 32
    • 84922103553 scopus 로고    scopus 로고
    • Caper: Comparative Analyses of Phylogenetics and Evolution in R
    • Orme D, Freckleton RP, Thomas G, Petzoldt T, Fritz S et al., 2012. Caper: Comparative Analyses of Phylogenetics and Evolution in R. R package version 0.5. https://cran.r-project.org/web/ packages/caper/
    • (2012) R Package Version , pp. 5
    • Orme, D.1    Freckleton, R.P.2    Thomas, G.3    Petzoldt, T.4    Fritz, S.5
  • 33
    • 0031421806 scopus 로고    scopus 로고
    • Inferring evolutionary processes from phylogeni- es
    • Pagel MD, 1997 Inferring evolutionary processes from phylogeni- es. Zool. Scripta 26: 331-348.
    • (1997) Zool. Scripta , vol.26 , pp. 331-348
    • Pagel, M.D.1
  • 34
    • 0033613376 scopus 로고    scopus 로고
    • Inferring the historical patterns of biological evolution
    • Pagel MD, 1999. Inferring the historical patterns of biological evolution. Nature 401: 877-884.
    • (1999) Nature , vol.401 , pp. 877-884
    • Pagel, M.D.1
  • 36
    • 0028161482 scopus 로고
    • Truth or consequences: Effects of phylogenetic accuracy on two comparative methods
    • Purvis A, Gittleman JL, Luh H-K, 1994. Truth or consequences: Effects of phylogenetic accuracy on two comparative methods. J. Theor. Biol. 167: 293-300
    • (1994) J. Theor. Biol , vol.167 , pp. 293-300
    • Purvis, A.1    Gittleman, J.L.2    Luh, H.-K.3
  • 37
    • 85039827899 scopus 로고    scopus 로고
    • R: A Language and Environment For Statis- tical Computing. Vienna: R Foundation for Statistical Computing. Saino N, Rubolini D, Serra L, Caprioli M, Morganti M et al., 2010. Sex-related variation in migration phenology in relation to sexual dimorphism: A test of competing hypotheses for the evolution of protandry
    • R Core Team, 2013. R: A Language and Environment For Statis- tical Computing. Vienna: R Foundation for Statistical Computing. Saino N, Rubolini D, Serra L, Caprioli M, Morganti M et al., 2010. Sex-related variation in migration phenology in relation to sexual dimorphism: A test of competing hypotheses for the evolution of protandry. J. Evol. Biol. 23: 2054-2065
    • (2013) J. Evol. Biol , vol.23 , pp. 2054-2065
    • Core Team, R.1
  • 40
    • 79955411243 scopus 로고    scopus 로고
    • Why the phylogenetic regression appears robust to tree misspecification
    • Stone EA, 2011. Why the phylogenetic regression appears robust to tree misspecification. Syst. Biol. 60: 245-260
    • (2011) Syst. Biol , vol.60 , pp. 245-260
    • Stone, E.A.1
  • 41
    • 77954202497 scopus 로고    scopus 로고
    • DendroPy: A Python library for phylogenetic computing
    • Sukumaran J, Holder MT, 2010. DendroPy: A Python library for phylogenetic computing. Bioinformatics 26: 1569-1571
    • (2010) Bioinformatics , vol.26 , pp. 1569-1571
    • Sukumaran, J.1    Holder, M.T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.