-
1
-
-
0023965741
-
SMILES, a Chemical Language and Information System. 1. Introduction to Methodology and Encoding Rules
-
Weininger, D. SMILES, a Chemical Language and Information System. 1. Introduction to Methodology and Encoding Rules J. Chem. Inf. Model. 1988, 28, 31-36 10.1021/ci00057a005
-
(1988)
J. Chem. Inf. Model.
, vol.28
, pp. 31-36
-
-
Weininger, D.1
-
2
-
-
0343869724
-
SYBYL Line Notation (SLN): A Versatile Language for Chemical Structure Representation
-
Ash, S.; Cline, M. A.; Homer, R. W.; Hurst, T.; Smith, G. B. SYBYL Line Notation (SLN): A Versatile Language for Chemical Structure Representation J. Chem. Inf. Model. 1997, 37, 71-79 10.1021/ci960109j
-
(1997)
J. Chem. Inf. Model.
, vol.37
, pp. 71-79
-
-
Ash, S.1
Cline, M.A.2
Homer, R.W.3
Hurst, T.4
Smith, G.B.5
-
3
-
-
58149119670
-
SYBYL Line Notation (SLN): A Single Notation to Represent Chemical Structures, Queries, Reactions, and Virtual Libraries
-
Homer, R. W.; Swanson, J.; Jilek, R. J.; Hurst, T.; Clark, R. D. SYBYL Line Notation (SLN): A Single Notation To Represent Chemical Structures, Queries, Reactions, and Virtual Libraries J. Chem. Inf. Model. 2008, 48, 2294-2307 10.1021/ci7004687
-
(2008)
J. Chem. Inf. Model.
, vol.48
, pp. 2294-2307
-
-
Homer, R.W.1
Swanson, J.2
Jilek, R.J.3
Hurst, T.4
Clark, R.D.5
-
4
-
-
0001708959
-
Description of Several Chemical Structure File Formats used by Computer Programs Developed at Molecular Design Limited
-
Dalby, A.; Nourse, J. G.; Hounshell, W. D.; Gushurst, A. K.; Grier, D. L.; Leland, B. A.; Laufer, J. Description of Several Chemical Structure File Formats used by Computer Programs Developed at Molecular Design Limited J. Chem. Inf. Model. 1992, 32, 244-255 10.1021/ci00007a012
-
(1992)
J. Chem. Inf. Model.
, vol.32
, pp. 244-255
-
-
Dalby, A.1
Nourse, J.G.2
Hounshell, W.D.3
Gushurst, A.K.4
Grier, D.L.5
Leland, B.A.6
Laufer, J.7
-
5
-
-
0024664539
-
SMILES. 2. Algorithm for Generation of Unique SMILES Notation
-
Weininger, D.; Weininger, A.; Weininger, J. L. SMILES. 2. Algorithm for Generation of Unique SMILES Notation J. Chem. Inf. Model. 1989, 29, 97-101 10.1021/ci00062a008
-
(1989)
J. Chem. Inf. Model.
, vol.29
, pp. 97-101
-
-
Weininger, D.1
Weininger, A.2
Weininger, J.L.3
-
6
-
-
84945585379
-
-
Daylight Chemical Information Systems, Inc. (accessed May 19)
-
Daylight Chemical Information Systems, Inc. http://daylight.com (accessed May 19, 2015).
-
(2015)
-
-
-
7
-
-
27744585251
-
An Open Standard for Chemical Structure Representation: The IUPAC Chemical Identifier
-
Collier, H. Infonortics: Malmesbury, U.K
-
Stein, S. E.; Heller, S. R.; Tchekhovskoi, D. An Open Standard for Chemical Structure Representation: The IUPAC Chemical Identifier. In Proceedings of the 2003 International Chemical Information Conference, Nimes, France, October 19-22, 2003; Collier, H., Ed.; Infonortics: Malmesbury, U.K., 2003; pp 131-143.
-
(2003)
Proceedings of the 2003 International Chemical Information Conference, Nimes, France, October 19-22, 2003
, pp. 131-143
-
-
Stein, S.E.1
Heller, S.R.2
Tchekhovskoi, D.3
-
8
-
-
84945569890
-
-
The IUPAC International Chemical Identifier (InChI). (accessed May 19)
-
The IUPAC International Chemical Identifier (InChI). http://www.iupac.org/home/publications/e-resources/inchi.html (accessed May 19, 2015).
-
(2015)
-
-
-
9
-
-
84876725194
-
InChI - The Worldwide Chemical Structure Identifier Standard
-
Heller, S. R.; McNaught, A.; Stein, S.; Tchekhovskoi, D.; Pletnev, I. V. InChI-The Worldwide Chemical Structure Identifier Standard J. Cheminf. 2013, 5, 7 10.1186/1758-2946-5-7
-
(2013)
J. Cheminf.
, vol.5
, pp. 7
-
-
Heller, S.R.1
McNaught, A.2
Stein, S.3
Tchekhovskoi, D.4
Pletnev, I.V.5
-
10
-
-
84933527788
-
InChI, the IUPAC International Chemical Identifier
-
Heller, S. R.; McNaught, A.; Pletnev, I.; Stein, S.; Tchekhovskoi, D. InChI, the IUPAC International Chemical Identifier J. Cheminf. 2015, 7, 23 10.1186/s13321-015-0068-4
-
(2015)
J. Cheminf.
, vol.7
, pp. 23
-
-
Heller, S.R.1
McNaught, A.2
Pletnev, I.3
Stein, S.4
Tchekhovskoi, D.5
-
11
-
-
84867453227
-
Towards a Universal SMILES representation - A standard method to generate canonical SMILES based on the InChI
-
O'Boyle, N. M. Towards a Universal SMILES representation-A standard method to generate canonical SMILES based on the InChI J. Cheminf. 2012, 4, 22 10.1186/1758-2946-4-22
-
(2012)
J. Cheminf.
, vol.4
, pp. 22
-
-
O'Boyle, N.M.1
-
12
-
-
0000293407
-
The Generation of a Unique Machine Description for Chemical Structures - A Technique Developed at Chemical Abstracts Service
-
Morgan, H. L. The Generation of a Unique Machine Description for Chemical Structures-A Technique Developed at Chemical Abstracts Service J. Chem. Doc. 1965, 5, 107-113 10.1021/c160017a018
-
(1965)
J. Chem. Doc.
, vol.5
, pp. 107-113
-
-
Morgan, H.L.1
-
13
-
-
0000656724
-
Stereochemically Unique Naming Algorithm
-
Wipke, W. T.; Dyott, T. M. Stereochemically Unique Naming Algorithm J. Am. Chem. Soc. 1974, 96, 4834-4842 10.1021/ja00822a021
-
(1974)
J. Am. Chem. Soc.
, vol.96
, pp. 4834-4842
-
-
Wipke, W.T.1
Dyott, T.M.2
-
14
-
-
36749115750
-
On the Recognition of Identical Graphs Representing Molecular Topology
-
Randić, M. On the Recognition of Identical Graphs Representing Molecular Topology J. Chem. Phys. 1974, 60, 3920-3928 10.1063/1.1680839
-
(1974)
J. Chem. Phys.
, vol.60
, pp. 3920-3928
-
-
Randić, M.1
-
15
-
-
0016510106
-
On Unique Numbering of Atoms and Unique Codes for Molecular Graphs
-
Randić, M. On Unique Numbering of Atoms and Unique Codes for Molecular Graphs J. Chem. Inf. Model. 1975, 15, 105-108 10.1021/ci60002a007
-
(1975)
J. Chem. Inf. Model.
, vol.15
, pp. 105-108
-
-
Randić, M.1
-
16
-
-
0012476776
-
On Canonical Numbering of Atoms in a Molecule and Graph Isomorphism
-
Randić, M. On Canonical Numbering of Atoms in a Molecule and Graph Isomorphism J. Chem. Inf. Model. 1977, 17, 171-180 10.1021/ci60011a013
-
(1977)
J. Chem. Inf. Model.
, vol.17
, pp. 171-180
-
-
Randić, M.1
-
17
-
-
0001023429
-
Canonical Numbering and Constitutional Symmetry
-
Jochum, C.; Gasteiger, J. Canonical Numbering and Constitutional Symmetry J. Chem. Inf. Model. 1977, 17, 113-117 10.1021/ci60010a014
-
(1977)
J. Chem. Inf. Model.
, vol.17
, pp. 113-117
-
-
Jochum, C.1
Gasteiger, J.2
-
18
-
-
0002603293
-
Practical Graph Isomorphism
-
McKay, B. D. Practical Graph Isomorphism Congr. Numer. 1981, 30, 45-87
-
(1981)
Congr. Numer.
, vol.30
, pp. 45-87
-
-
McKay, B.D.1
-
19
-
-
0040077987
-
Computer Perception of Topological Symmetry via Canonical Numbering of Atoms
-
Randic, M.; Brissey, G. M.; Wilkins, C. L. Computer Perception of Topological Symmetry via Canonical Numbering of Atoms J. Chem. Inf. Model. 1981, 21, 52-59 10.1021/ci00029a011
-
(1981)
J. Chem. Inf. Model.
, vol.21
, pp. 52-59
-
-
Randic, M.1
Brissey, G.M.2
Wilkins, C.L.3
-
20
-
-
84945560703
-
-
Ph.D. Thesis, Philosophical Faculty II, University of Zürich, Zürich, Switzerland
-
Rohde, B. GM-Search. A System for Stereochemical Substructure Search. Ph.D. Thesis, Philosophical Faculty II, University of Zürich, Zürich, Switzerland, 1988.
-
(1988)
GM-Search. A System for Stereochemical Substructure Search
-
-
Rohde, B.1
-
21
-
-
0028427705
-
A Computer-Oriented Linear Canonical Notational System for the Representation of Organic Structures with Stereochemistry
-
Agarwal, K. K.; Gelernter, H. L. A Computer-Oriented Linear Canonical Notational System for the Representation of Organic Structures with Stereochemistry J. Chem. Inf. Model. 1994, 34, 463-479 10.1021/ci00019a001
-
(1994)
J. Chem. Inf. Model.
, vol.34
, pp. 463-479
-
-
Agarwal, K.K.1
Gelernter, H.L.2
-
22
-
-
0002690545
-
Isomorphism, Automorphism Partitioning, and Canonical Labeling can be Solved in Polynomial-time for Molecular Graphs
-
Faulon, J. L. Isomorphism, Automorphism Partitioning, and Canonical Labeling can be Solved in Polynomial-time for Molecular Graphs J. Chem. Inf. Model. 1998, 38, 432-444 10.1021/ci9702914
-
(1998)
J. Chem. Inf. Model.
, vol.38
, pp. 432-444
-
-
Faulon, J.L.1
-
23
-
-
84945588582
-
-
(accessed May 19)
-
Kelley, B.: Graph Canonicalization (2003). http://www.drdobbs.com/graph-canonicalization/184405341 (accessed May 19, 2015).
-
(2015)
Graph Canonicalization (2003)
-
-
Kelley, B.1
-
24
-
-
1842740167
-
MOLGEN-CID - A Canonizer for Molecules and Graphs Accessible through the Internet
-
Braun, J.; Gugisch, R.; Kerber, A.; Laue, R.; Meringer, M.; Rücker, C. MOLGEN-CID-A Canonizer for Molecules and Graphs Accessible through the Internet J. Chem. Inf. Model. 2004, 44, 542-548 10.1021/ci030404l
-
(2004)
J. Chem. Inf. Model.
, vol.44
, pp. 542-548
-
-
Braun, J.1
Gugisch, R.2
Kerber, A.3
Laue, R.4
Meringer, M.5
Rücker, C.6
-
25
-
-
1842639395
-
The Signature Molecular Descriptor. 4. Canonizing Molecules using Extended Valence Sequences
-
Faulon, J. L.; Collins, M. J.; Carr, R. D. The Signature Molecular Descriptor. 4. Canonizing Molecules using Extended Valence Sequences J. Chem. Inf. Model. 2004, 44, 427-436 10.1021/ci0341823
-
(2004)
J. Chem. Inf. Model.
, vol.44
, pp. 427-436
-
-
Faulon, J.L.1
Collins, M.J.2
Carr, R.D.3
-
26
-
-
84876554425
-
Stereo Signature Molecular Descriptor
-
Carbonell, P.; Carlsson, L.; Faulon, J. L. Stereo Signature Molecular Descriptor J. Chem. Inf. Model. 2013, 53, 887-897 10.1021/ci300584r
-
(2013)
J. Chem. Inf. Model.
, vol.53
, pp. 887-897
-
-
Carbonell, P.1
Carlsson, L.2
Faulon, J.L.3
-
27
-
-
0023566630
-
Three Partition Refinement Algorithms
-
Paige, R.; Tarjan, R. E. Three Partition Refinement Algorithms SIAM J. Comput. 1987, 16, 973-989 10.1137/0216062
-
(1987)
SIAM J. Comput.
, vol.16
, pp. 973-989
-
-
Paige, R.1
Tarjan, R.E.2
-
30
-
-
84945532331
-
-
(accessed on May 19)
-
"Towers of Hanoi" Mergesort Implementation. https://sourceware.org/ml/libc-alpha/2002-01/msg00218.html (accessed on May 19, 2015).
-
(2015)
Towers of Hanoi" Mergesort Implementation
-
-
-
33
-
-
84891762026
-
The ChEMBL Bioactivity Database: An Update
-
Bento, P. A.; Gaulton, A.; Hersey, A.; Bellis, L. J.; Chambers, J.; Davies, M.; Krüger, F. A.; Light, Y.; Mak, L.; McGlinchey, S.; Nowotka, M.; Papadatos, G.; Santos, R.; Overington, J. P. The ChEMBL Bioactivity Database: An Update Nucleic Acids Res. 2014, 42 (D1) D1083-D1090 10.1093/nar/gkt1031
-
(2014)
Nucleic Acids Res.
, vol.42
, Issue.D1
, pp. D1083-D1090
-
-
Bento, P.A.1
Gaulton, A.2
Hersey, A.3
Bellis, L.J.4
Chambers, J.5
Davies, M.6
Krüger, F.A.7
Light, Y.8
Mak, L.9
McGlinchey, S.10
Nowotka, M.11
Papadatos, G.12
Santos, R.13
Overington, J.P.14
-
34
-
-
84864199587
-
ZINC: A Free Tool to Discover Chemistry for Biology
-
Irwin, J. J.; Sterling, T.; Mysinger, M. M.; Bolstad, E. S.; Coleman, R. G. ZINC: A Free Tool to Discover Chemistry for Biology J. Chem. Inf. Model. 2012, 52, 1757-1768 10.1021/ci3001277
-
(2012)
J. Chem. Inf. Model.
, vol.52
, pp. 1757-1768
-
-
Irwin, J.J.1
Sterling, T.2
Mysinger, M.M.3
Bolstad, E.S.4
Coleman, R.G.5
-
35
-
-
84945540127
-
-
(accessed May 11)
-
ZIM and ZBC ZINC special subsets. http://zinc.docking.org/browse/subsets/special (accessed May 11, 2015).
-
(2015)
ZIM and ZBC ZINC Special Subsets
-
-
-
36
-
-
0027571488
-
Graph Automorphism Perception Algorithms in Computer-enhanced Structure Elucidation
-
Razinger, M.; Balasubramanian, K.; Munk, M. E. Graph Automorphism Perception Algorithms in Computer-enhanced Structure Elucidation J. Chem. Inf. Model. 1993, 33, 197-201 10.1021/ci00012a003
-
(1993)
J. Chem. Inf. Model.
, vol.33
, pp. 197-201
-
-
Razinger, M.1
Balasubramanian, K.2
Munk, M.E.3
-
38
-
-
0017411710
-
The Protein Data Bank: A Computer-based Archival File for Macromolecular Structures
-
Bernstein, F. C.; Koetzle, T. F.; Williams, G. J.; Meyer, E. E., Jr.; Brice, M.D.; Rodgers, J. R.; Kennard, O.; Shimanouchi, T.; Tasumi, M. The Protein Data Bank: A Computer-based Archival File for Macromolecular Structures J. Mol. Biol. 1977, 112, 535-542 10.1016/S0022-2836(77)80200-3
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.3
Meyer, E.E.4
Brice, M.D.5
Rodgers, J.R.6
Kennard, O.7
Shimanouchi, T.8
Tasumi, M.9
-
39
-
-
84925409371
-
-
version 14.10.6.0; ChemAxon: Budapest, Hungary, (accessed May 19, 2015)
-
MarvinSketch, version 14.10.6.0; ChemAxon: Budapest, Hungary, 2014; http://www.chemaxon.com (accessed May 19, 2015).
-
(2014)
MarvinSketch
-
-
-
40
-
-
84945554351
-
-
(accessed Aug 27)
-
https://nextmovesoftware.com/blog/2015/08/24/biopolymer-canonicalisation-scaling-between-toolkits/ (accessed Aug 27, 2015).
-
(2015)
-
-
-
41
-
-
84945566334
-
Generating Canonical Identifiers for Glycoproteins and Other Chemically Modified Biopolymers
-
Boston, MA, Aug 16-20, 2015; Paper CINF-1
-
Sayle, R. A.; May, J.; O'Boyle, N. Generating Canonical Identifiers for Glycoproteins and Other Chemically Modified Biopolymers. Presented at the 250th ACS National Meeting, Boston, MA, Aug 16-20, 2015; Paper CINF-1.
-
250th ACS National Meeting
-
-
Sayle, R.A.1
May, J.2
O'Boyle, N.3
|