메뉴 건너뛰기




Volumn 21, Issue 11, 2015, Pages 1033-1039

Detection of the NS3 Q80K polymorphism by Sanger and deep sequencing in hepatitis C virus genotype 1a strains in the UK

Author keywords

Lineage; NS3; Protease inhibitors; Q80K; Simeprevir

Indexed keywords

NS3 PROTEASE; PROTEINASE; UNCLASSIFIED DRUG; VIRUS ENZYME; VIRUS RNA; NS3 PROTEIN, HEPATITIS C VIRUS; VIRUS PROTEIN;

EID: 84945466065     PISSN: 1198743X     EISSN: 14690691     Source Type: Journal    
DOI: 10.1016/j.cmi.2015.07.017     Document Type: Article
Times cited : (21)

References (29)
  • 1
    • 84863663083 scopus 로고    scopus 로고
    • Hcv genotypes are differently prone to the development of resistance to linear and macrocyclic protease inhibitors
    • Cento V., Mirabelli C., Salpini R., Dimonte S., Artese A., Costa G., et al. Hcv genotypes are differently prone to the development of resistance to linear and macrocyclic protease inhibitors. PloS One 2012, 7:e39652.
    • (2012) PloS One , vol.7 , pp. e39652
    • Cento, V.1    Mirabelli, C.2    Salpini, R.3    Dimonte, S.4    Artese, A.5    Costa, G.6
  • 2
    • 78649644443 scopus 로고    scopus 로고
    • Susceptibility of treatment-naive hepatitis c virus (hcv) clinical isolates to hcv protease inhibitors
    • Bae A., Sun S.C., Qi X., Chen X., Ku K., Worth A., et al. Susceptibility of treatment-naive hepatitis c virus (hcv) clinical isolates to hcv protease inhibitors. Antimicrob Agents Chemother 2010, 54:5288-5297.
    • (2010) Antimicrob Agents Chemother , vol.54 , pp. 5288-5297
    • Bae, A.1    Sun, S.C.2    Qi, X.3    Chen, X.4    Ku, K.5    Worth, A.6
  • 3
    • 84873041135 scopus 로고    scopus 로고
    • Hepatitis c virus variants with decreased sensitivity to direct-acting antivirals (daas) were rarely observed in daa-naive patients prior to treatment
    • Bartels D.J., Sullivan J.C., Zhang E.Z., Tigges A.M., Dorrian J.L., De Meyer S., et al. Hepatitis c virus variants with decreased sensitivity to direct-acting antivirals (daas) were rarely observed in daa-naive patients prior to treatment. J Virol 2013, 87:1544-1553.
    • (2013) J Virol , vol.87 , pp. 1544-1553
    • Bartels, D.J.1    Sullivan, J.C.2    Zhang, E.Z.3    Tigges, A.M.4    Dorrian, J.L.5    De Meyer, S.6
  • 4
    • 84893472499 scopus 로고    scopus 로고
    • Baseline hepatitis c virus (hcv) ns3 polymorphisms and their impact on treatment response in clinical studies of the hcv ns3 protease inhibitor faldaprevir
    • Berger K.L., Triki I., Cartier M., Marquis M., Massariol M.J., Bocher W.O., et al. Baseline hepatitis c virus (hcv) ns3 polymorphisms and their impact on treatment response in clinical studies of the hcv ns3 protease inhibitor faldaprevir. Antimicrob Agents Chemother 2014, 58:698-705.
    • (2014) Antimicrob Agents Chemother , vol.58 , pp. 698-705
    • Berger, K.L.1    Triki, I.2    Cartier, M.3    Marquis, M.4    Massariol, M.J.5    Bocher, W.O.6
  • 5
    • 58149388300 scopus 로고    scopus 로고
    • Naturally occurring dominant resistance mutations to hepatitis c virus protease and polymerase inhibitors in treatment-naive patients
    • Kuntzen T., Timm J., Berical A., Lennon N., Berlin A.M., Young S.K., et al. Naturally occurring dominant resistance mutations to hepatitis c virus protease and polymerase inhibitors in treatment-naive patients. Hepatology 2008, 48:1769-1778.
    • (2008) Hepatology , vol.48 , pp. 1769-1778
    • Kuntzen, T.1    Timm, J.2    Berical, A.3    Lennon, N.4    Berlin, A.M.5    Young, S.K.6
  • 6
    • 84884501841 scopus 로고    scopus 로고
    • Natural ns3 resistance polymorphisms occur frequently prior to treatment in hiv-positive patients with acute hepatitis c
    • Leggewie M., Sreenu V.B., Abdelrahman T., Leitch E.C., Wilkie G.S., Klymenko T., et al. Natural ns3 resistance polymorphisms occur frequently prior to treatment in hiv-positive patients with acute hepatitis c. AIDS 2013, 27:2485-2488.
    • (2013) AIDS , vol.27 , pp. 2485-2488
    • Leggewie, M.1    Sreenu, V.B.2    Abdelrahman, T.3    Leitch, E.C.4    Wilkie, G.S.5    Klymenko, T.6
  • 8
    • 84922318694 scopus 로고    scopus 로고
    • Prevalence of the hepatitis c virus ns3 polymorphism q80k in genotype 1 patients in the european region
    • Sarrazin C., Lathouwers E., Peeters M., Daems B., Buelens A., Witek J., et al. Prevalence of the hepatitis c virus ns3 polymorphism q80k in genotype 1 patients in the european region. Antiviral Res 2015, 116C:10-16.
    • (2015) Antiviral Res , vol.116C , pp. 10-16
    • Sarrazin, C.1    Lathouwers, E.2    Peeters, M.3    Daems, B.4    Buelens, A.5    Witek, J.6
  • 9
    • 84858690642 scopus 로고    scopus 로고
    • Naturally occurring hepatitis c virus (hcv) ns3/4a protease inhibitor resistance-related mutations in hcv genotype 1-infected subjects in Italy
    • Vicenti I., Rosi A., Saladini F., Meini G., Pippi F., Rossetti B., et al. Naturally occurring hepatitis c virus (hcv) ns3/4a protease inhibitor resistance-related mutations in hcv genotype 1-infected subjects in Italy. J Antimicrob Chemother 2012, 67:984-987.
    • (2012) J Antimicrob Chemother , vol.67 , pp. 984-987
    • Vicenti, I.1    Rosi, A.2    Saladini, F.3    Meini, G.4    Pippi, F.5    Rossetti, B.6
  • 10
    • 84907264316 scopus 로고    scopus 로고
    • Hepatitis c virus (hcv) ns3 sequence diversity and antiviral resistance-associated variant frequency in hcv/hiv coinfection
    • Jabara C.B., Hu F., Mollan K.R., Williford S.E., Menezes P., Yang Y., et al. Hepatitis c virus (hcv) ns3 sequence diversity and antiviral resistance-associated variant frequency in hcv/hiv coinfection. Antimicrob Agents Chemother 2014, 58:6079-6092.
    • (2014) Antimicrob Agents Chemother , vol.58 , pp. 6079-6092
    • Jabara, C.B.1    Hu, F.2    Mollan, K.R.3    Williford, S.E.4    Menezes, P.5    Yang, Y.6
  • 12
    • 84901217985 scopus 로고    scopus 로고
    • Simeprevir with peginterferon and ribavirin leads to high rates of svr in patients with hcv genotype 1 who relapsed after previous therapy: A phase 3 trial
    • Forns X., Lawitz E., Zeuzem S., Gane E., Bronowicki J.P., Andreone P., et al. Simeprevir with peginterferon and ribavirin leads to high rates of svr in patients with hcv genotype 1 who relapsed after previous therapy: A phase 3 trial. Gastroenterology 2014, 146:1669-1679 e1663.
    • (2014) Gastroenterology , vol.146 , pp. 1669-1679 e1663
    • Forns, X.1    Lawitz, E.2    Zeuzem, S.3    Gane, E.4    Bronowicki, J.P.5    Andreone, P.6
  • 13
    • 84906053496 scopus 로고    scopus 로고
    • Simeprevir with pegylated interferon alfa 2a plus ribavirin in treatment-naive patients with chronic hepatitis c virus genotype 1 infection (quest-1): A phase 3, randomised, double-blind, placebo-controlled trial
    • Jacobson I.M., Dore G.J., Foster G.R., Fried M.W., Radu M., Rafalsky V.V., et al. Simeprevir with pegylated interferon alfa 2a plus ribavirin in treatment-naive patients with chronic hepatitis c virus genotype 1 infection (quest-1): A phase 3, randomised, double-blind, placebo-controlled trial. Lancet 2014, 384:403-413.
    • (2014) Lancet , vol.384 , pp. 403-413
    • Jacobson, I.M.1    Dore, G.J.2    Foster, G.R.3    Fried, M.W.4    Radu, M.5    Rafalsky, V.V.6
  • 14
    • 84906059095 scopus 로고    scopus 로고
    • Simeprevir with pegylated interferon alfa 2a or 2b plus ribavirin in treatment-naive patients with chronic hepatitis c virus genotype 1 infection (quest-2): a randomised, double-blind, placebo-controlled phase 3 trial
    • Manns M., Marcellin P., Poordad F., de Araujo E.S., Buti M., Horsmans Y., et al. Simeprevir with pegylated interferon alfa 2a or 2b plus ribavirin in treatment-naive patients with chronic hepatitis c virus genotype 1 infection (quest-2): a randomised, double-blind, placebo-controlled phase 3 trial. Lancet 2014, 384:414-426.
    • (2014) Lancet , vol.384 , pp. 414-426
    • Manns, M.1    Marcellin, P.2    Poordad, F.3    de Araujo, E.S.4    Buti, M.5    Horsmans, Y.6
  • 15
    • 84945472556 scopus 로고    scopus 로고
    • [accessed 3.03.15].
    • Simeprevir summary of product characteristics. Available at: [accessed 3.03.15]. http://www.Ema.Europa.Eu/docs/en_gb/document_library/epar_-_product_information/human/002777/wc500167867.Pdf.
  • 16
    • 80255127234 scopus 로고    scopus 로고
    • Cutadapt removes adapter sequences from high-throughput sequencing reads
    • Martin M. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet J 2011, 17:10-12.
    • (2011) EMBnet J , vol.17 , pp. 10-12
    • Martin, M.1
  • 17
    • 84922377591 scopus 로고    scopus 로고
    • Virvarseq: A low-frequency virus variant detection pipeline for illumina sequencing using adaptive base-calling accuracy filtering
    • Verbist B.M., Thys K., Reumers J., Wetzels Y., Van der Borght K., Talloen W., et al. Virvarseq: A low-frequency virus variant detection pipeline for illumina sequencing using adaptive base-calling accuracy filtering. Bioinformatics 2015, 31:94-101.
    • (2015) Bioinformatics , vol.31 , pp. 94-101
    • Verbist, B.M.1    Thys, K.2    Reumers, J.3    Wetzels, Y.4    Van der Borght, K.5    Talloen, W.6
  • 18
    • 84921810516 scopus 로고    scopus 로고
    • Deep-sequencing analysis of the gene encoding the hepatitis c virus nonstructural 3-4a protease confirms a low prevalence of telaprevir-resistant variants at baseline and the end of the realize study
    • Dierynck I., Thys K., Ghys A., Sullivan J.C., Kieffer T.L., Aerssens J., et al. Deep-sequencing analysis of the gene encoding the hepatitis c virus nonstructural 3-4a protease confirms a low prevalence of telaprevir-resistant variants at baseline and the end of the realize study. J Infect Dis 2014, 210:1871-1880.
    • (2014) J Infect Dis , vol.210 , pp. 1871-1880
    • Dierynck, I.1    Thys, K.2    Ghys, A.3    Sullivan, J.C.4    Kieffer, T.L.5    Aerssens, J.6
  • 20
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of phyml 3.0
    • Guindon S., Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of phyml 3.0. Syst Biol 2010, 59:307-321.
    • (2010) Syst Biol , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6
  • 21
    • 77949718257 scopus 로고    scopus 로고
    • Fasttree 2--approximately maximum-likelihood trees for large alignments
    • Price M.N., Dehal P.S., Arkin A.P. Fasttree 2--approximately maximum-likelihood trees for large alignments. PloS One 2010, 5:e9490.
    • (2010) PloS One , vol.5 , pp. e9490
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 22
    • 79960717109 scopus 로고    scopus 로고
    • Detection of minority resistance during early hiv-1 infection: natural variation and spurious detection rather than transmission and evolution of multiple viral variants
    • Gianella S., Delport W., Pacold M.E., Young J.A., Choi J.Y., Little S.J., et al. Detection of minority resistance during early hiv-1 infection: natural variation and spurious detection rather than transmission and evolution of multiple viral variants. J Virol 2011, 85:8359-8367.
    • (2011) J Virol , vol.85 , pp. 8359-8367
    • Gianella, S.1    Delport, W.2    Pacold, M.E.3    Young, J.A.4    Choi, J.Y.5    Little, S.J.6
  • 23
    • 84926667719 scopus 로고    scopus 로고
    • Global origin and transmission of hepatitis c virus nonstructural protein 3 q80k polymorphism
    • McCloskey R.M., Liang R.H., Joy J.B., Krajden M., Montaner J.S., Harrigan P.R., et al. Global origin and transmission of hepatitis c virus nonstructural protein 3 q80k polymorphism. J Infect Dis 2015, 211:1288-1295.
    • (2015) J Infect Dis , vol.211 , pp. 1288-1295
    • McCloskey, R.M.1    Liang, R.H.2    Joy, J.B.3    Krajden, M.4    Montaner, J.S.5    Harrigan, P.R.6
  • 24
    • 79960937707 scopus 로고    scopus 로고
    • Evidence for separation of hcv subtype 1a into two distinct clades
    • Pickett B.E., Striker R., Lefkowitz E.J. Evidence for separation of hcv subtype 1a into two distinct clades. J Viral Hepat 2011, 18:608-618.
    • (2011) J Viral Hepat , vol.18 , pp. 608-618
    • Pickett, B.E.1    Striker, R.2    Lefkowitz, E.J.3
  • 25
    • 84911409020 scopus 로고    scopus 로고
    • Simeprevir plus sofosbuvir, with or without ribavirin, to treat chronic infection with hepatitis c virus genotype 1 in non-responders to pegylated interferon and ribavirin and treatment-naive patients: the cosmos randomised study
    • Lawitz E., Sulkowski M.S., Ghalib R., Rodriguez-Torres M., Younossi Z.M., Corregidor A., et al. Simeprevir plus sofosbuvir, with or without ribavirin, to treat chronic infection with hepatitis c virus genotype 1 in non-responders to pegylated interferon and ribavirin and treatment-naive patients: the cosmos randomised study. Lancet 2014, 384:1756-1765.
    • (2014) Lancet , vol.384 , pp. 1756-1765
    • Lawitz, E.1    Sulkowski, M.S.2    Ghalib, R.3    Rodriguez-Torres, M.4    Younossi, Z.M.5    Corregidor, A.6
  • 26
    • 84862560600 scopus 로고    scopus 로고
    • Resistance analysis of the hepatitis c virus ns3 protease inhibitor asunaprevir
    • McPhee F., Friborg J., Levine S., Chen C., Falk P., Yu F., et al. Resistance analysis of the hepatitis c virus ns3 protease inhibitor asunaprevir. Antimicrob Agents Chemother 2012, 56:3670-3681.
    • (2012) Antimicrob Agents Chemother , vol.56 , pp. 3670-3681
    • McPhee, F.1    Friborg, J.2    Levine, S.3    Chen, C.4    Falk, P.5    Yu, F.6
  • 27
    • 84921905663 scopus 로고    scopus 로고
    • In vitro and in vivo antiviral activity and resistance profile of the hepatitis c virus ns3/4a protease inhibitor abt-450
    • Pilot-Matias T., Tripathi R., Cohen D., Gaultier I., Dekhtyar T., Lu L., et al. In vitro and in vivo antiviral activity and resistance profile of the hepatitis c virus ns3/4a protease inhibitor abt-450. Antimicrob Agents Chemother 2015, 59:988-997.
    • (2015) Antimicrob Agents Chemother , vol.59 , pp. 988-997
    • Pilot-Matias, T.1    Tripathi, R.2    Cohen, D.3    Gaultier, I.4    Dekhtyar, T.5    Lu, L.6
  • 28
    • 84927798764 scopus 로고    scopus 로고
    • Virology analyses of hcv isolates from genotype 1-infected patients treated with simeprevir plus peginterferon/ribavirin in phase iib/iii studies
    • Lenz O., Verbinnen T., Fevery B., Tambuyzer L., Vijgen L., Peeters M., et al. Virology analyses of hcv isolates from genotype 1-infected patients treated with simeprevir plus peginterferon/ribavirin in phase iib/iii studies. J Hepatol 2015, 62:1008-1014.
    • (2015) J Hepatol , vol.62 , pp. 1008-1014
    • Lenz, O.1    Verbinnen, T.2    Fevery, B.3    Tambuyzer, L.4    Vijgen, L.5    Peeters, M.6
  • 29
    • 84901789510 scopus 로고    scopus 로고
    • Evolution of simeprevir-resistant variants over time by ultra-deep sequencing in hcv genotype 1b
    • Akuta N., Suzuki F., Sezaki H., Suzuki Y., Hosaka T., Kobayashi M., et al. Evolution of simeprevir-resistant variants over time by ultra-deep sequencing in hcv genotype 1b. J Med Virol 2014, 86:1314-1322.
    • (2014) J Med Virol , vol.86 , pp. 1314-1322
    • Akuta, N.1    Suzuki, F.2    Sezaki, H.3    Suzuki, Y.4    Hosaka, T.5    Kobayashi, M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.