Revealing latitudinal patterns of mitochondrial DNA diversity in Chileans

Forensic Science International: Genetics

Volumn 20, Issue , 2016, Pages 81-88

  Gómez Carballa, Alberto ^a   Moreno, Fabián ^a   Álvarez Iglesias, Vanesa ^a   Martinón Torres, Federico ^a,c   García Magariños, Manuel ^a   Pantoja Astudillo, Jaime A ^b   Aguirre Morales, Eugenia ^b   Bustos, Patricio ^b   Salas, Antonio ^a  

^a UNIVERSITY OF SANTIAGO DE COMPOSTELA   (Spain)

^b Servicio Medico Legal   (Chile)

^c University Hospital of Santiago de Compostela   (Spain)

Author keywords

Chile; Haplogroup; Haplotypes; Mitochondrial DNA; Phylogeography; Population sub structure

Indexed keywords

MITOCHONDRIAL DNA; NUCLEOTIDE; MICROSATELLITE DNA;

ARTICLE; AUTOSOME; CHILEAN; DNA SEQUENCE; FOUNDER EFFECT; GENDER BIAS; GENE FREQUENCY; GENE POOL; GENETIC VARIABILITY; GEOGRAPHIC DISTRIBUTION; HAPLOGROUP; HAPLOTYPE; HUMAN; LATITUDE; MITOCHONDRIAL HAPLOGROUP; PHYLOGEOGRAPHY; PRIORITY JOURNAL; Y CHROMOSOME; CHILE; ETHNIC GROUP; GENETIC VARIATION; GENETICS; MALE; PHYLOGENY; POPULATION GENETICS;

CHILE; DNA, MITOCHONDRIAL; ETHNIC GROUPS; FOUNDER EFFECT; GENETIC VARIATION; GENETICS, POPULATION; HAPLOTYPES; HUMANS; MALE; MICROSATELLITE REPEATS; PHYLOGENY; PHYLOGEOGRAPHY; SEQUENCE ANALYSIS, DNA;

EID: 84945284903     PISSN: 18724973     EISSN: 18780326     Source Type: Journal    
DOI: 10.1016/j.fsigen.2015.10.002     Document Type: Article

References (40)

1. T. Dillehay The Settlement of the Americas 2000 Marston Book Services Limited Oxford
2. E. Medina-Lois, R.A.M. Kaempffer, Capítulo Segundo: La situación de salud chilena y sus factores condicionantes - Población y características demográficas: Estructura racial (Ed.) E.d.s.p.B.d.d.l.U.d. Chile, Chile, 1979.
3. S. Horai, R. Kondo, Y. Nakagawa-Hattori, S. Hayashi, S. Sonoda, and K. Tajima Peopling of the Americas, founded by four major lineages of mitochondrial DNA Mol. Biol. Evol. 10 1993 23 47
4. M.L. Moraga, P. Rocco, J.F. Miquel, F. Nervi, E. Llop, R. Chakraborty, F. Rothhammer, and P. Carvallo Mitochondrial DNA polymorphisms in Chilean aboriginal populations: implications for the peopling of the southern cone of the continent Am. J. Phys. Anthropol. 113 2000 19 29
5. J. García-Bour, A. Pérez-Pérez, S. Álvarez, E. Fernández, A.M. López-Parra, E. Arroyo-Pardo, and D. Turbón Early population differentiation in extinct aborigines from Tierra del Fuego-Patagonia: ancient mtDNA sequences and Y-chromosome STR characterization Am. J. Phys. Anthropol. 123 2004 361 370
6. M. Moraga, C.M. Santoro, V.G. Standen, P. Carvallo, and F. Rothhammer Microevolution in prehistoric Andean populations: chronologic mtDNA variation in the desert valleys of northern Chile Am. J. Phys. Anthropol. 127 2005 170 181
7. F. Moreno, A. Freire-Aradas, C. Phillips, M. Fondevila, A. Carracedo, and M.V. Lareu SNP variation with latitude: Analysis of the SNPforID 52-plex markers in north, mid-region and south Chilean populations Forensic Sci. Int. Genet. 10 2014 12 16
8. M. Bodner, U.A. Perego, G. Huber, L. Fendt, A.W. Röck, B. Zimmermann, A. Olivieri, A. Gómez-Carballa, H. Lancioni, N. Angerhofer, and et al. Rapid coastal spread of first Americans: novel insights from South America's southern cone mitochondrial genomes Genome Res. 22 2012 811 820
9. M. de Saint Pierre, F. Gandini, U.A. Perego, M. Bodner, A. Gómez-Carballa, D. Corach, N. Angerhofer, S.R. Woodward, O. Semino, A. Salas, and et al. Arrival of paleo-indians to the southern cone of South America: new clues from mitogenomes PLoS One 7 2012 e51311
10. S. Eyheramendy, F.I. Martinez, F. Manevy, C. Vial, and G.M. Repetto Genetic structure characterization of Chileans reflects historical immigration patterns Nat. Commun. 6 2015 6472
11. D. Reich, N. Patterson, D. Campbell, A. Tandon, S. Mazieres, N. Ray, M.V. Parra, W. Rojas, C. Duque, N. Mesa, and et al. Reconstructing Native American population history Nature 488 2012 370 374
12. A. Salas, M. Richards, M.V. Lareu, R. Scozzari, Á. Coppa, Á. Torroni, V. Macaulay, and Á. Carracedo The African diaspora: mitochondrial DNA and the Atlantic slave trade Am. J. Hum. Genet. 74 2004 454 465
13. U. Toscanini, F. Moreno, J.A. Pantoja-Astudillo, E.A. Morales, P. Bustos, and A. Salas A reference frequency database of 15 autosomal STRs in Chile Forensic Sci. Int. Genet. 19 2015 35 36
14. W. Parson, and A. Dür EMPOP-a forensic mtDNA database Forensic Sci. Int. Genet. 1 2007 88 92
15. R.K. Roby, S.D. González, N.R. Phillips, J.V. Planz, J.L. Thomas, J.A. Pantoja-Astudillo, J. Ge, E. Aguirre-Morales, A.J. Eisenberg, and et al. Autosomal STR allele frequencies and Y-STR and mtDNA haplotypes in Chilean sample populations Forensic Sci. Int. Genet. Suppl. Ser. 2 2009 532 533
16. R.M. Andrews, I. Kubacka, P.F. Chinnery, R.N. Lightowlers, D.M. Turnbull, and N. Howell Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA Nat. Genet. 23 1999 147
17. A. Salas, M. Coble, S. Desmyter, T. Grzybowski, L. Gusmâo, C. Hohoff, M.M. Holland, J.A. Irwin, T. Kupiec, H.Y. Lee, and et al. A cautionary note on switching mitochondrial DNA reference sequences in forensic genetics Forensic Sci. Int. Genet. 6 2012 e182 e184
18. L. Excoffier, and H.E. Lischer Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows Mol. Ecol. Resour. 10 2010 564 567
19. J. Pardo-Seco, A. Gómez-Carballa, J. Amigo, F. Martinón-Torres, and A. Salas A genome-wide study of modern-day Tuscans: revisiting Herodotus's theory on the origin of the Etruscans PLoS One 9 2014 e105920
20. C. Cotterman A calculus for statistico-genetics P.D. Thesis 1940 Ohio State University Ohio, USA
21. M. García-Magariños, T. Egeland, I. López-de-Ullibarri, N. Hjort, and A. Salas A parametric approach to kinship hypothesis testing using identity-by-descent parameters Stat. Appl. Genet. Mol. Biol. 2015 in press
22. E.A. Thompson The estimation of pairwise relationships Ann. Hum. Genet. 39 1975 173 188
23. A. Salas, Á. Carracedo, M. Richards, and V. Macaulay Charting the ancestry of African Americans Am. J. Hum. Genet. 77 2005 676 680
24. H. Pfeiffer, P. Forster, C. Ortmann, and B. Brinkmann The results of an mtDNA study of 1200 inhabitants of a German village in comparison to other Caucasian databases and its relevance for forensic casework Int. J. Legal Med. 114 2001 169 172
25. K.L. Monson, K.W.P. Miller, M.R. Wilson, J.A. DiZinno, and B. Budowle The mtDNA Population Database: an integrated software and database resource for forensic comparison Forensic Sci. Commun. 4 2002 2
26. M.L. Catelli, V. Álvarez-Iglesias, Á. Gómez-Carballa, Á. Mosquera-Miguel, C. Romanini, Á. Borosky, J. Amigo, Á. Carracedo, C. Vullo, and A. Salas The impact of modern migrations on present-day multi-ethnic Argentina as recorded on the mitochondrial DNA genome BMC Genet. 12 2011 77
27. V. Álvarez-Iglesias, J.C. Jaime, Á. Carracedo, and A. Salas Coding region mitochondrial DNA SNPs: targeting East Asian and Native American haplogroups Forensic Sci. Int. Genet. 1 2007 44 55
28. C. Ginther, D. Corach, G.A. Penacino, J.A. Rey, F.R. Carnese, M.H. Hutz, A. Anderson, J. Just, F.M. Salzano, and M.C. King Genetic variation among the Mapuche Indians from the Patagonian region of Argentina: mitochondrial DNA sequence variation and allele frequencies of several nuclear genes EXS 67 1993 211 219
29. A. Salas, J.C. Jaime, V. Álvarez-Iglesias, and Á. Carracedo Gender bias in the multiethnic genetic composition of central Argentina J. Hum. Genet. 53 2008 662 674
30. M.C. Bobillo, B. Zimmermann, A. Sala, G. Huber, A. Rock, H.-J. Bandelt, D. Corach, and W. Parson Amerindian mitochondrial DNA haplogroups predominate in the population of Argentina: towards a first nationwide forensic mitochondrial DNA sequence database Int. J. Legal Med. 74 2010 65 76
31. V. Álvarez-Iglesias, Á. Mosquera-Miguel, M. Cerezo, B. Quintáns, M.T. Zarrabeitia, I. Cuscó, M.V. Lareu, O. García, L. Pérez-Jurado, Á. Carracedo, and et al. New population and phylogenetic features of the internal variation within mitochondrial DNA macro-haplogroup R0 PLoS One 4 2009 e5112
32. A. Salas, Á. Acosta, V. Álvarez-Iglesias, M. Cerezo, C. Phillips, M.V. Lareu, and Á. Carracedo The mtDNA ancestry of admixed Colombian populations Am. J. Hum. Biol. 20 2008 584 591
33. B. Marcheco-Teruel, E.J. Parra, E. Fuentes-Smith, A. Salas, H.N. Buttenschon, D. Demontis, M. Torres-Español, L.C. Marín-Padrón, E.J. Gómez-Cabezas, V. Álvarez-Iglesias, and et al. Cuba: exploring the history of admixture and the genetic basis of pigmentation using autosomal and uniparental markers PLoS Genet. 10 2014 e1004488
34. I. Mendizabal, K. Sandoval, G. Berniell-Lee, F. Calafell, A. Salas, A. Martínez-Fuentes, and D. Comas Genetic origin, admixture, and asymmetry in maternal and paternal human lineages in Cuba BMC Evol. Biol. 8 2008 213
35. J. Alves-Silva, M. da Silva Santos, P.E. Guimaraes, A.C. Ferreira, H.-J. Bandelt, S.D. Pena, and V.F. Prado The ancestry of Brazilian mtDNA lineages Am. J. Hum. Genet. 67 2000 444 461
36. J. Söchtig, V. Álvarez-Iglesias, A. Mosquera-Miguel, M. Gelabert-Besada, A. Gómez-Carballa, and A. Salas Genomic insights on the ethno-history of the Maya and the 'Ladinos' from Guatemala BMC Genomics 16 2015 131
37. A. Salas, J. Lovo-Gómez, V. Álvarez-Iglesias, M. Cerezo, M.V. Lareu, V. Macaulay, M.B. Richards, and Á. Carracedo Mitochondrial echoes of first settlement and genetic continuity in El Salvador PLoS One 4 2009 e6882
38. A. Salas, H.-J. Bandelt, V. Macaulay, and M.B. Richards Phylogeographic investigations: the role of trees in forensic genetics Forensic Sci. Int. 168 2007 1 13
39. U. Toscanini, A. Salas, Á. Carracedo, G. Berardi, Á. Amorim, L. Gusmão, and E. Raimondi A simulation-based approach to evaluate population stratification in Argentina Forensic Sci. Int. Genet. Suppl. Ser. 1 2008 662 663
40. U. Toscanini, M. García-Magariños, G. Berardi, T. Egeland, E. Raimondi, and A. Salas Evaluating methods to correct for population stratification when estimating paternity indexes PLoS One 7 2012 e49832