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Volumn 81, Issue 18, 2015, Pages 6463-6473

Using amplicon sequencing to characterize and monitor bacterial diversity in drinking water distribution systems

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; DISINFECTION; EFFICIENCY; INDICATORS (CHEMICAL); POTABLE WATER; RNA; WATER; WATER DISTRIBUTION SYSTEMS; WATER QUALITY; WATER SUPPLY SYSTEMS;

EID: 84945283473     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.01297-15     Document Type: Article
Times cited : (49)

References (39)
  • 1
    • 0003399039 scopus 로고    scopus 로고
    • Waterborne disease: epidemiology and ecology.
    • John Wiley and Sons, Chichester, United Kingdom.
    • Hunter PR. 1997. Waterborne disease: epidemiology and ecology. John Wiley and Sons, Chichester, United Kingdom.
    • (1997)
    • Hunter, P.R.1
  • 2
    • 0036100176 scopus 로고    scopus 로고
    • Estimating the burden of disease due to water, sanitation and hygiene at a global level
    • Prüss A, Kay D, Fewtrell L, Bartram J. 2002. Estimating the burden of disease due to water, sanitation and hygiene at a global level. Environ Health Perspect 110:537-542. http://dx.doi.org/10.1289/ehp.02110537.
    • (2002) Environ Health Perspect , vol.110 , pp. 537-542
    • Prüss, A.1    Kay, D.2    Fewtrell, L.3    Bartram, J.4
  • 3
    • 0141683089 scopus 로고    scopus 로고
    • EPA guidance manual: alternative disinfectants and oxidants, EPA 815-R-99-014.
    • US Environmental Protection Agency, Washington, DC.
    • US Environmental Protection Agency. 1999. EPA guidance manual: alternative disinfectants and oxidants, EPA 815-R-99-014. US Environmental Protection Agency, Washington, DC.
    • (1999)
  • 4
    • 0025139068 scopus 로고
    • Detection of coliform bacteria in water by polymerase chain reaction and gene probes
    • Bej AK, Steffan RJ, DiCesare J, Haff L, Atlas RM. 1990. Detection of coliform bacteria in water by polymerase chain reaction and gene probes. Appl Environ Microbiol 56:307-314.
    • (1990) Appl Environ Microbiol , vol.56 , pp. 307-314
    • Bej, A.K.1    Steffan, R.J.2    DiCesare, J.3    Haff, L.4    Atlas, R.M.5
  • 5
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G, de Waal EC, Uitterlinden AG. 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59:695-700.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    de Waal, E.C.2    Uitterlinden, A.G.3
  • 7
    • 84871496103 scopus 로고    scopus 로고
    • Influence of hydraulic regimes on bacterial community structure and composition in an experimental drinking water distribution system
    • Douterelo I, Sharpe RL, Boxall JB. 2013. Influence of hydraulic regimes on bacterial community structure and composition in an experimental drinking water distribution system. Water Res 47:503-516. http://dx.doi .org/10.1016/j.watres.2012.09.053.
    • (2013) Water Res , vol.47 , pp. 503-516
    • Douterelo, I.1    Sharpe, R.L.2    Boxall, J.B.3
  • 8
    • 84879013496 scopus 로고    scopus 로고
    • Microbiol community changes with decaying chloramine residuals in a lab-scale system
    • Bal Krishna KC, Sathasivan A, Ginige MP. 2013. Microbiol community changes with decaying chloramine residuals in a lab-scale system. Water Res 47:4666-4679. http://dx.doi.org/10.1016/j.watres.2013.04.035.
    • (2013) Water Res , vol.47 , pp. 4666-4679
    • Bal Krishna, K.C.1    Sathasivan, A.2    Ginige, M.P.3
  • 9
    • 84866269058 scopus 로고    scopus 로고
    • Metagenomic analyses of drinking water receiving different disinfection treatments
    • Gomez-Alvarez V, Revetta RP, Santo Domingo JW. 2012. Metagenomic analyses of drinking water receiving different disinfection treatments. Appl Environ Microbiol 78:6095-6102. http://dx.doi.org/10.1128/AEM .01018-12.
    • (2012) Appl Environ Microbiol , vol.78 , pp. 6095-6102
    • Gomez-Alvarez, V.1    Revetta, R.P.2    Santo Domingo, J.W.3
  • 10
    • 84868622992 scopus 로고    scopus 로고
    • Microbial community dynamics of an urban drinking water distribution system subjected to phases of chloramination and chlorination treatments
    • Hwang C, Ling F, Andersen GL, LeChevallier MW, Liu WT. 2012. Microbial community dynamics of an urban drinking water distribution system subjected to phases of chloramination and chlorination treatments. Appl Environ Microbiol 78:7856-7865. http://dx.doi.org/10.1128 /AEM.01892-12.
    • (2012) Appl Environ Microbiol , vol.78 , pp. 7856-7865
    • Hwang, C.1    Ling, F.2    Andersen, G.L.3    LeChevallier, M.W.4    Liu, W.T.5
  • 11
    • 0003505334 scopus 로고    scopus 로고
    • Standard methods for the examination of water and wastewater
    • 20th ed. American Public Health Association, Washington, DC.
    • American Public Health Association. 1998. Standard methods for the examination of water and wastewater, 20th ed. American Public Health Association, Washington, DC.
    • (1998)
  • 12
    • 21244433546 scopus 로고    scopus 로고
    • Profiling bacterial survival through a water treatment process and subsequent distribution system
    • Hoefel D, Monis PT, Grooby WL, Andrews S, Saint CP. 2005. Profiling bacterial survival through a water treatment process and subsequent distribution system. J Appl Microbiol 99:175-186. http://dx.doi.org/10.1111 /j.1365-2672.2005.02573.x.
    • (2005) J Appl Microbiol , vol.99 , pp. 175-186
    • Hoefel, D.1    Monis, P.T.2    Grooby, W.L.3    Andrews, S.4    Saint, C.P.5
  • 13
    • 67650492058 scopus 로고    scopus 로고
    • Ammoniaoxidizing bacteria and archaea in groundwater treatment and drinking water distribution systems
    • van der Wielen PW, Voost S, van der Kooij D. 2009. Ammoniaoxidizing bacteria and archaea in groundwater treatment and drinking water distribution systems. Appl Environ Microbiol 75:4687-4695. http: //dx.doi.org/10.1128/AEM.00387-09.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 4687-4695
    • van der Wielen, P.W.1    Voost, S.2    van der Kooij, D.3
  • 14
    • 33745747425 scopus 로고    scopus 로고
    • The application of ultraviolet irradiation to exogenous sources of DNA in plasticware and water for the amplification of low copy number DNA
    • Tamariz J, Voynarovska K, Prinz M, Caragine T. 2006. The application of ultraviolet irradiation to exogenous sources of DNA in plasticware and water for the amplification of low copy number DNA. J Forensic Sci 51: 790-794. http://dx.doi.org/10.1111/j.1556-4029.2006.00172.x.
    • (2006) J Forensic Sci , vol.51 , pp. 790-794
    • Tamariz, J.1    Voynarovska, K.2    Prinz, M.3    Caragine, T.4
  • 15
    • 77958605242 scopus 로고    scopus 로고
    • An efficient multistrategy DNA decontamination procedure of PCR reagents for hypersensitive PCR applications.
    • Champlot S, Berthelot C, Pruvost M, Bennett EA, Grange T, Geigl E. 2010 An efficient multistrategy DNA decontamination procedure of PCR reagents for hypersensitive PCR applications. PLoS One 5:e13042. http: //dx.doi.org/10.1371/journal.pone.0013042.
    • (2010) PLoS One , vol.5 , pp. e13042
    • Champlot, S.1    Berthelot, C.2    Pruvost, M.3    Bennett, E.A.4    Grange, T.5    Geigl, E.6
  • 16
    • 0031711754 scopus 로고    scopus 로고
    • Bias in template-to-product ratios in multitemplate PCR
    • Polz MF, Cavanaugh CM. 1998. Bias in template-to-product ratios in multitemplate PCR. Appl Environ Microbiol 64:3724-3730.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3724-3730
    • Polz, M.F.1    Cavanaugh, C.M.2
  • 17
    • 80255127234 scopus 로고    scopus 로고
    • Cutadapt removes adapter sequences from highthroughput sequencing reads
    • Martin M. 2012. Cutadapt removes adapter sequences from highthroughput sequencing reads. EMBnet J 17:10-12.
    • (2012) EMBnet J , vol.17 , pp. 10-12
    • Martin, M.1
  • 19
    • 79952006773 scopus 로고    scopus 로고
    • Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons.
    • Haas BJ, Gevers D, Earl AM, Feldgarden M, Ward DV, Giannoukos G. 2011 Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Res 21:494-504. http: //dx.doi.org/10.1101/gr.112730.110.
    • (2011) Genome Res , vol.21 , pp. 494-504
    • Haas, B.J.1    Gevers, D.2    Earl, A.M.3    Feldgarden, M.4    Ward, D.V.5    Giannoukos, G.6
  • 21
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: a new phylogenetic method for comparing microbial communities.
    • Lozupone C, Knight R. 2005. UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71:8228-8235. http://dx.doi.org/10.1128/AEM.71.12.8228-8235.2005
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 22
    • 0020371747 scopus 로고
    • Chlorine resistance patterns of bacteria from two drinking water distribution systems
    • Ridgway HF, Olson BH. 1982. Chlorine resistance patterns of bacteria from two drinking water distribution systems. Appl Environ Microbiol 44:972-987.
    • (1982) Appl Environ Microbiol , vol.44 , pp. 972-987
    • Ridgway, H.F.1    Olson, B.H.2
  • 24
    • 0025768249 scopus 로고
    • Classification of eight new species of ammonia-oxidizing bacteria: Nitrosomonas communis sp. nov., Nitrosomonas ureae sp. nov., Nitrosomonas aestuarii sp. nov., Nitrosomonas marina sp. nov., Nitrosomonas nitrosa sp. nov., Nitrosomonas eutropha sp. nov., Nitrosomonas oligotropha sp. nov. and Nitrosomonas halophila sp. nov.
    • Koops HP, Bottcher B, Moller UC, Pommerening-Roser A, Stehr G. 1991. Classification of eight new species of ammonia-oxidizing bacteria: Nitrosomonas communis sp. nov., Nitrosomonas ureae sp. nov., Nitrosomonas aestuarii sp. nov., Nitrosomonas marina sp. nov., Nitrosomonas nitrosa sp. nov., Nitrosomonas eutropha sp. nov., Nitrosomonas oligotropha sp. nov. and Nitrosomonas halophila sp. nov. J Gen Microbiol 137:1689-1699. http://dx.doi.org/10.1099/00221287-137-7-1689.
    • (1991) J Gen Microbiol , vol.137 , pp. 1689-1699
    • Koops, H.P.1    Bottcher, B.2    Moller, U.C.3    Pommerening-Roser, A.4    Stehr, G.5
  • 26
    • 0031975148 scopus 로고    scopus 로고
    • Nitrospira-like bacteria associated with nitrite oxidation in freshwater aquaria
    • Hovanec TA, Taylor LT, Blakis A, DeLong EF. 1998. Nitrospira-like bacteria associated with nitrite oxidation in freshwater aquaria. Appl Environ Microbiol 64:258-264.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 258-264
    • Hovanec, T.A.1    Taylor, L.T.2    Blakis, A.3    DeLong, E.F.4
  • 27
    • 84871009951 scopus 로고    scopus 로고
    • Mechanisms of antibiotic resistance in Burkholderia pseudomallei: implications for treatment of melioidosis
    • Schweizer HP. 2012. Mechanisms of antibiotic resistance in Burkholderia pseudomallei: implications for treatment of melioidosis. Future Microbiol 7:1389-1399. http://dx.doi.org/10.2217/fmb.12.116.
    • (2012) Future Microbiol , vol.7 , pp. 1389-1399
    • Schweizer, H.P.1
  • 28
    • 68549112955 scopus 로고    scopus 로고
    • Variability of Burkholderia pseudomallei strain sensitivities to chlorine disinfection.
    • O'Connell HA, Rose LJ, Shams A, Bradley M, Arduino MJ, Rice EW. 2009 Variability of Burkholderia pseudomallei strain sensitivities to chlorine disinfection. Appl Environ Microbiol 75:5405-5409. http://dx.doi .org/10.1128/AEM.00062-09.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 5405-5409
    • O'Connell, H.A.1    Rose, L.J.2    Shams, A.3    Bradley, M.4    Arduino, M.J.5    Rice, E.W.6
  • 29
    • 17744367420 scopus 로고    scopus 로고
    • Disinfection of Burkholderia pseudomallei in potable water
    • Howard K, Inglis TJJ. 2005. Disinfection of Burkholderia pseudomallei in potable water. Water Res 39:1085-1092. http://dx.doi.org/10.1016/j .watres.2004.12.028.
    • (2005) Water Res , vol.39 , pp. 1085-1092
    • Howard, K.1    Inglis, T.J.J.2
  • 30
    • 79961080459 scopus 로고    scopus 로고
    • Cellular response of the amoeba Acanthamoeba castellanii to chlorine, chlorine dioxide, and monochloramine treatments
    • Mogoa E, Bodet C, Morel F, Rodier M, Legube B, Hechard Y. 2011. Cellular response of the amoeba Acanthamoeba castellanii to chlorine, chlorine dioxide, and monochloramine treatments. Appl Environ Microbiol 77:4974-4980. http://dx.doi.org/10.1128/AEM.00234-11.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 4974-4980
    • Mogoa, E.1    Bodet, C.2    Morel, F.3    Rodier, M.4    Legube, B.5    Hechard, Y.6
  • 31
    • 0141829830 scopus 로고    scopus 로고
    • The effect of free chlorine on Burkholderia pseudomallei in potable water
    • Howard K, Inglis TJJ. 2003. The effect of free chlorine on Burkholderia pseudomallei in potable water. Water Res 37:4425-4432. http://dx.doi.org /10.1016/S0043-1354(03)00440-8.
    • (2003) Water Res , vol.37 , pp. 4425-4432
    • Howard, K.1    Inglis, T.J.J.2
  • 32
    • 84920932874 scopus 로고    scopus 로고
    • Assessing the impact of water treatment on bacterial biofilms in drinking water distribution systems using high-throughput DNA sequencing.
    • Shaw JLA, Monis P, Fabris R, Ho L, Braun K, Drikas M, Cooper A. 2014 Assessing the impact of water treatment on bacterial biofilms in drinking water distribution systems using high-throughput DNA sequencing. Chemosphere 117:185-192. http://dx.doi.org/10.1016/j .chemosphere.2014.06.077.
    • (2014) Chemosphere , vol.117 , pp. 185-192
    • Shaw, J.L.A.1    Monis, P.2    Fabris, R.3    Ho, L.4    Braun, K.5    Drikas, M.6    Cooper, A.7
  • 33
    • 0035077009 scopus 로고    scopus 로고
    • Riddle of biofilm resistance
    • Lewis K. 2001. Riddle of biofilm resistance. Antimicrob Agents Chemother 45:999-1007. http://dx.doi.org/10.1128/AAC.45.4.999-1007.2001.
    • (2001) Antimicrob Agents Chemother , vol.45 , pp. 999-1007
    • Lewis, K.1
  • 34
    • 84877344463 scopus 로고    scopus 로고
    • Characterization and identification of a chlorine-resistant bacterium, Sphingomonas TS001, from a model drinking water distribution system.
    • Sun W, Lui W, Cui L, Zhang M, Wang B. 2013. Characterization and identification of a chlorine-resistant bacterium, Sphingomonas TS001, from a model drinking water distribution system. Sci Total Environ 458-460:169-175. http://dx.doi.org/10.1016/j.scitotenv.2013.04.030.
    • (2013) Sci Total Environ , vol.458-460 , pp. 169-175
    • Sun, W.1    Lui, W.2    Cui, L.3    Zhang, M.4    Wang, B.5
  • 36
    • 0035505856 scopus 로고    scopus 로고
    • Melioidosis: an emerging tropical health problem
    • Josephson J. 2001. Melioidosis: an emerging tropical health problem. Environ Sci Technol 35:454A-457A. http://dx.doi.org/10.1021/es0125265.
    • (2001) Environ Sci Technol , vol.35 , pp. 454A-457A
    • Josephson, J.1
  • 38
    • 0019763159 scopus 로고
    • The developmental biology of heterocyst and alkinete formation in cyanobacteria
    • Adams DG, Carr NG. 1981. The developmental biology of heterocyst and alkinete formation in cyanobacteria. Crit Rev Microbiol 9:45-100. http: //dx.doi.org/10.3109/10408418109104486.
    • (1981) Crit Rev Microbiol , vol.9 , pp. 45-100
    • Adams, D.G.1    Carr, N.G.2
  • 39
    • 0000980228 scopus 로고
    • Tastes and odours in the aquatic environment: a review
    • Wnorowski AU. 1992. Tastes and odours in the aquatic environment: a review. Water SA 18:203-214.
    • (1992) Water SA , vol.18 , pp. 203-214
    • Wnorowski, A.U.1


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