Anaerobic ammonium oxidation and its contribution to nitrogen removal in China's coastal wetlands

Scientific Reports

Volumn 5, Issue , 2015, Pages

  Hou, Lijun ^a   Zheng, Yanling ^a,b   Liu, Min ^b   Li, Xiaofei ^b   Lin, Xianbiao ^b   Yin, Guoyu ^a,b   Gao, Juan ^a   Deng, Fengyu ^a   Chen, Fei ^a   Jiang, Xiaofen ^a  

^a EAST CHINA NORMAL UNIVERSITY   (China)

^b EAST CHINA NORMAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

AMMONIUM DERIVATIVE; NITROGEN;

ANAEROBIC GROWTH; BACTERIUM; CHEMISTRY; CHINA; CLASSIFICATION; GENETICS; ISOLATION AND PURIFICATION; OXIDATION REDUCTION REACTION; WETLAND;

AMMONIUM COMPOUNDS; ANAEROBIOSIS; BACTERIA; CHINA; NITROGEN; OXIDATION-REDUCTION; WETLANDS;

EID: 84945270389     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep15621     Document Type: Article

References (59)

1. Galloway, J. N. et al. Transformation of the nitrogen cycle: Recent trends, questions, and potential solutions. Science 320, 889-892 (2008).
2. Gruber, N. & Galloway, J. N. An Earth-system perspective of the global nitrogen cycle. Nature 451, 293-296 (2008).
3. Seitzinger, S. P. Nitrogen cycle: Out of reach. Nature 452, 162-163 (2008).
4. Davidson, E. A. The contribution of manure and fertilizer nitrogen to atmospheric nitrous oxide since 1860. Nature Geosci. 2, 659-662 (2009).
5. Ravishankara, A., Daniel, J. & Portmann, R. Nitrous oxide (N2O): The dominant ozone-depleting substance emitted in the twenty first century. Science 326, 123-125 (2009).
6. Bodirsky, B. L. et al. Reactive nitrogen requirements to feed the world in 2050 and potential o mitigate nitrogen pollution. Nat. Commun. 5, 3858, doi: 10.1038/ncomms4858 (2014).
7. Seitzinger, S. P. et al. Global river nutrient export: A scenario analysis of past and future trends. Glob. Biogeochem. Cycles 24, GB0A08 (2010).
8. Diaz, R. J. & Rosenberg, R. Spreading dead zones and consequences for marine ecosystem. Science 321, 926-929 (2008).
9. Canfield, D. E., Glazer, A. N. & Falkowski, P. G. The evolution and future of earth's nitrogen cycle. Science 330, 192-196 (2010).
10. Deegan, L. A. et al. Coastal eutrophication as a driver of salt marsh loss. Nature 490, 388-392 (2012).
11. Cui, S. H., Shi, Y. L., Groffman, P. M., Schlesinger, W. H. & Zhu, Y. G. Centennial-scale analysis of the creation and fate of reactive nitrogen in China (1910-2010). Proc. Natl. Acad. Sci. USA 110, 2052-2057 (2013).
12. Ti, C., Pan, J., Xia, X. & Yan, X. A nitrogen budget of mainland China with spatial and temporal variation. Biogeochemistry 108, 381-394 (2012).
13. Kuypers, M. M. M. et al. Anaerobic ammonium oxidation by anammox bacteria in the Black Sea. Nature 422, 608-611 (2003).
14. Mulder, A., Graaf, A. A., Robertson, L. A. & Kuenen, J. G. Anaerobic ammonium oxidation discovered in a denitrifying fluidized bed reactor. FEMS Microbiol. Ecol. 16, 177-184 (1995).
15. Thamdrup, B. & Dalsgaard, T. Production of N2 through anaerobic ammonium oxidation coupled to nitrate reduction in marine sediments. Appl. Environ. Microbiol. 68, 1312-1318 (2002).
16. Lam, P. et al. Revising the nitrogen cycle in the Peruvian oxygen minimum zone. Proc. Natl. Acad. Sci. USA 106, 4752-4757 (2009).
17. Trimmer, M. & Nicholls, J. C. Production of nitrogen gas via anammox and denitrification in intact sediment cores along a continental shelf to slope transect in the North Atlantic. Limnol. Oceanogr. 54, 577-589 (2009).
18. Jensen, M. M., Lam, P. & Revsbech, N. P. Intensive nitrogen loss over the Omani shelf due to anammox coupled with dissimilatory nitrite reduction to ammonium. ISME J. 5, 1660-1670 (2011).
19. Lisa, J., Song, B., Tobias, C. R. & Duernberger, K. A. Impacts of freshwater flushing on anammox community structure and activities in the New River Estuary, USA. Aquat. Microb. Ecol. 72, 17-31 (2014).
20. Naeher, S. et al. Molecular and geochemical constraints on anaerobic ammonium oxidation (anammox) in a riparian zone of the Seine Estuary (France). Biogeochemistry 123, 237-250 (2015).
21. Wang, S., Zhu, G. B., Peng, Y. Z., Jetten, M. S. M. & Yin, C. Anammox bacterial abundance, activity, and contribution in riparian sediments of the Pear River Estuary. Environ. Sci. Technol. 46, 8834-8842 (2012).
22. Hou, L. J. et al. Anaerobic ammonium oxidation (anammox) bacterial diversity, abundance, and activity in marsh sediments of the Yangtze Estuary. J. Geophys. Res. 118, 1237-1246 (2013).
23. Risgaard-Petersen, N. et al. Anaerobic ammonia oxidation in an estuarine sediment. Aquat. Microbial. Ecol. 36, 293-304 (2004).
24. Engström, P., Dalsgaard, T., Hulth, S. & Aller, R. C. Anaerobic ammonium oxidation by nitrite (anammox): Implications for N2 production in coastal marine sediments. Geochim. Cosmochim. Acta 69, 2057-2065 (2005).
25. Trimmer, M., Nicholls, J. C. & Deflandre, B. Anaerobic ammonium oxidation measured in sediments along the Thames Estuary, United Kingdom. Appl. Environ. Microbiol. 69, 6447-6454 (2003).
26. Jetten, M. S. M., Op den Camp, H. J. M., Kuenen, J. G. & Strous, M. Description of the order Brocadiales. In: Krieg, N. R. et al. Bergey's Manual of Systematic Bacteriology. Springer, Heidelberg, Germany. pp 506-603 (2010).
27. Hu, B. L. et al. Distribution and diversity of anaerobic ammonium-oxidizing bacteria in the sediments of the Qiantang River. Environ. Microbiol. Rep. 4, 540-547 (2012).
28. Schmid, M. C. et al. Anaerobic ammonium-oxidizing bacteria in marine environments: Widespread occurrence but low diversity. Environ. Microbiol. 9, 1476-1484 (2007).
29. Zhang, Y. et al. Diversity and abundance of aerobic and anaerobic ammonium-oxidizing bacteria in freshwater sediments of the Xinyi River (China). Environ. Microbiol. 9, 2375-2382 (2007).
30. Hamersley, M. R. et al. Water column anammox and denitrification in a temperate permanently stratified lake (Lake Rassnitzer, Germany). Systematic Appl. Microbiol. 32, 571-582 (2009).
31. Dale, O. R., Tobias, C. R. & Song, B. Biogeographical distribution of diverse anaerobic ammonium oxidizing (anammox) bacteria in Cape Fear River Estuary. Environ. Microbiol. 11, 1194-1207 (2009).
32. Hong, Y. G., Xu, X. R., Kan, J. J. & Chen, F. Linking seasonal inorganic nitrogen shift to the dynamics of microbial communities in the Chesapeake Bay. Appl. Microbiol. Biotechnol. 98, 3219-3229 (2014).
33. Jetten, M. S. M. et al. Anaerobic ammonium oxidation by marine and freshwater Planctomycete-like bacteria. Appl. Microbiol. Biotechnol. 63, 107-114 (2003).
34. Meyer, R. L., Risgaard-Petersen, N. & Allen, D. E. Correlation between anammox activity and microscale distribution of nitrite in a subtropical mangrove sediment. Appl. Environ. Microb. 71, 6142-6149 (2005).
35. Trimmer, M., Nicholls, J. C., Morley, N., Davies, C. A. & Aldridge, J. Biphasic behavior of anammox regulated by nitrite and nitrate in an estuarine sediment. Appl. Environ. Microbio. 71, 1923-1930 (2005).
36. Rattray, J. E. et al. Impact of temperature on ladderane lipid distribution in anammox bacteria. Appl. Environ. Microbiol. 76, 1596-1603 (2010).
37. Roberts, K. L., Eate, V. M., Eyre, B. D., Holland, D. P. & Cook, P. L. M. Hypoxic events stimulate nitrogen recycling in a shallow salt-wedge estuary: The Yarra River estuary, Australia. Limnol. Oceanogr. 57, 1427-1442 (2012).
38. Zhao, Y. et al. Seasonal variation and controlling factors of anaerobic ammonium oxidation in freshwater river sediments in the Taihu Lake region of China. Chemosphere 93, 2124-2131 (2013).
39. Schubert, C. J. et al. Anaerobic ammonium oxidation in a tropical freshwater system (Lake Tanganyika), Environ. Microbiol. 8, 1857-1863 (2006).
40. Wenk, C. et al. Partitioning between benthic and pelagic nitrate reduction in the Lake Lugano south basin. Limnol. Oceanogr. 59, 1421-1433 (2014).
41. Erler, D. V., Eyre, B. D. & Davison, L. The contribution of anammox and denitrification to sediment N2 production in a surface flow constructed wetland. Environ. Sci. Technol. 42, 9144-9150 (2008).
42. Rysgaard, S., Glud, R. N., Risgaard-Petersen, N. & Dalsgaard, T. Denitrification and anammox activity in Arctic marine sediments. Limnol. Oceanogr. 49, 1493-1502 (2004).
43. Hietanen, S. & Kuparinen, J. Seasonal and short-term variation in denitrification and anammox at a coastal station on the Gulf of Finland, Baltic Sea. Hydrobiologia 596, 67-77 (2008).
44. Rich, J. J., Dale, O. R., Song, B. & Ward, B. B. Anaerobic ammonium oxidation (anammox) in Chesapeake Bay sediments. Microb. Ecol. 55, 311-320 (2008).
45. Dong, L. F. et al. Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne Estuary, United Kingdom). Appl. Environ. Microbiol. 75, 3171-3179 (2009).
46. Koop-Jakobsen, K. & Giblin, A. E. Anammox in tidal marsh sediments: The role of salinity, nitrogen loading, and marsh vegetation. Estuar. Coast. 32, 238-245 (2009).
47. Brin, L., Giblin, A. E. & Rich, J. J. Environmental controls of anammox and denitrification in southern New England estuarine and shelf sediments. Limnol. Oceanogr. 59, 851-860 (2014).
48. Crowe, S. A., Canfield, D. E., Mucci, A., Sundby, B. & Maranger, R. Anammox, denitrification and fixed-nitrogen removal in sediments from the Lower St. Lawrence Estuary. Biogeosciences 9, 4309-4321 (2012).
49. Bernard, R., Mortazavi, B. & Kleinhuizen, A. A. Dissimilatory nitrate reduction to ammonium (DNRA) seasonally dominates NO3 - reduction pathways in an anthropogenically impacted sub-tropical coastal lagoon. Biogeochemistry 125, 47-64 (2015).
50. Cao, W. Z. & Wong, M. H. Current status of coastal zone issues and managements in China: A review. Environ. Int. 33, 985-992 (2007).
51. He, Q. et al. Economic development and coastal ecosystem change in China. Sci. Rep. 4, 5995, doi: 10.1038/srep05995 (2014).
52. Sun, Z. et al. China's coastal wetlands: Conservation history, implementation efforts, existing issues and strategies for future improvement. Environ. Int. 79, 25-41 (2015).
53. An, S. Q. et al. China's natural wetlands: Past problems, current status, and future challenges. Ambio 36, 335-342 (2007).
54. Yin, G. Y., Hou, L. J., Liu, M., Liu, Z. F. & Gardner, W. S. A novel membrane inlet mass spectrometer method to measure 15NH4 + for isotope enrichment experiments in aquatic ecosystems. Environ. Sci. Technol. 48, 9555-9562 (2014).
55. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25, 4876-4882 (1997).
56. Kumar, S., Tamura, K. & Nei, M. MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform. 5, 150-163 (2004).
57. Tamura, K., Dudley, J., Nei, M. & Kumar, S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24, 1596-1599 (2007).
58. Bernhard, A. E., Tucker, J., Giblin, A. E. & Stahl, D. A. Functionally distinct communities of ammonia-oxidizing bacteria along an estuarine salinity gradient. Environ. Microbiol. 9, 1439-1447 (2007).
59. ter Braak, C. J. F. & Šmilauer, P. CANOCO Reference Manual and CanoDraw for Windows User's Guide: Software for Canonical Community Ordination (version 4.5) Microcomputer Power (Ithaca NY, USA) (2002).