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Volumn 16, Issue 1, 2015, Pages

Radiation hybrid maps of the D-genome of Aegilops tauschii and their application in sequence assembly of large and complex plant genomes

(15)  Kumar, Ajay a   Seetan, Raed b,c   Mergoum, Mohamed a   Tiwari, Vijay K d   Iqbal, Muhammad J a,e   Wang, Yi f   Al Azzam, Omar b,g   Šimková, Hana h,i   Luo, Ming Cheng e   Dvorak, Jan e   Gu, Yong Q f   Denton, Anne b   Kilian, Andrzej j   Lazo, Gerard R f   Kianian, Shahryar F a,k  


Author keywords

Aegilops tauschii; Deletion; Physical mapping; Radiation hybrid mapping; Sequence assembly; Wheat

Indexed keywords

CONTIG;

EID: 84945218567     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/s12864-015-2030-2     Document Type: Article
Times cited : (21)

References (43)
  • 2
    • 0142214756 scopus 로고    scopus 로고
    • Forward genetics and map- based cloning approaches
    • Peters JL, Cnudde F, Gerats T. Forward genetics and map- based cloning approaches. Trends Plant Sci. 2003;8:484-91.
    • (2003) Trends Plant Sci , vol.8 , pp. 484-491
    • Peters, J.L.1    Cnudde, F.2    Gerats, T.3
  • 3
    • 46249084084 scopus 로고    scopus 로고
    • A high-density intervarietal map of the wheat genome enriched with markers derived from expressed sequence tags
    • Xue S, Zhang Z, Lin F, Kong Z, Cao Y, Li C, et al. A high-density intervarietal map of the wheat genome enriched with markers derived from expressed sequence tags. Theor Appl Genet. 2008;117:181-9.
    • (2008) Theor Appl Genet , vol.117 , pp. 181-189
    • Xue, S.1    Zhang, Z.2    Lin, F.3    Kong, Z.4    Cao, Y.5    Li, C.6
  • 4
    • 62449334781 scopus 로고    scopus 로고
    • Detailed recombination studies along chromosome 3B provide new insights on crossover distribution in wheat (Triticum aestivum L.)
    • Saintenac C, Falque M, Martin OC, Paux E, Feuillet C, Sourdille P. Detailed recombination studies along chromosome 3B provide new insights on crossover distribution in wheat (Triticum aestivum L.). Genetics. 2009;181:393-403.
    • (2009) Genetics , vol.181 , pp. 393-403
    • Saintenac, C.1    Falque, M.2    Martin, O.C.3    Paux, E.4    Feuillet, C.5    Sourdille, P.6
  • 5
    • 84877344186 scopus 로고    scopus 로고
    • A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor
    • Luo MC, Gu YQ, You FM, Deal KR, Ma Y, Hu Y, et al. A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor. Proc Natl Acad Sci U S A. 2013;110(19):7940-5.
    • (2013) Proc Natl Acad Sci U S A , vol.110 , Issue.19 , pp. 7940-7945
    • Luo, M.C.1    Gu, Y.Q.2    You, F.M.3    Deal, K.R.4    Ma, Y.5    Hu, Y.6
  • 6
    • 4243710447 scopus 로고    scopus 로고
    • Mapping of quantitative trait loci for agronomic important characters in hexaploid wheat (Triticum aestivum L.)
    • Börner A, Schumann E, Fürste A, Cöster H, Leithold B, Röder MS, et al. Mapping of quantitative trait loci for agronomic important characters in hexaploid wheat (Triticum aestivum L.). Theor Appl Genet. 2002;105:921-36.
    • (2002) Theor Appl Genet , vol.105 , pp. 921-936
    • Börner, A.1    Schumann, E.2    Fürste, A.3    Cöster, H.4    Leithold, B.5    Röder, M.S.6
  • 7
    • 26444566284 scopus 로고    scopus 로고
    • Gene networks in hexaploid wheat: interacting quantitative trait loci for grain protein content
    • Kulwal PL, Kumar N, Kumar A, Gupta RK, Balyan HS, Gupta PK. Gene networks in hexaploid wheat: interacting quantitative trait loci for grain protein content. Funct Integr Genome. 2005;5:254-9.
    • (2005) Funct Integr Genome , vol.5 , pp. 254-259
    • Kulwal, P.L.1    Kumar, N.2    Kumar, A.3    Gupta, R.K.4    Balyan, H.S.5    Gupta, P.K.6
  • 8
    • 84908424101 scopus 로고    scopus 로고
    • Genome-wide genetic dissection of supernumerary spikelet and related traits in common wheat (Triticum aestivum L.)
    • Echeverry-Solarte M, Kumar A, Kianian SF, Mantovani E, Simsek S, Alamri MS, et al. Genome-wide genetic dissection of supernumerary spikelet and related traits in common wheat (Triticum aestivum L.). Plant Genome. 2014; 7. doi: 10.3835/plantgenome2014.03.0013.
    • (2014) Plant Genome. , vol.7
    • Echeverry-Solarte, M.1    Kumar, A.2    Kianian, S.F.3    Mantovani, E.4    Simsek, S.5    Alamri, M.S.6
  • 9
    • 84937019684 scopus 로고    scopus 로고
    • Genome-wide mapping of spike-related and agronomic traits in a common wheat population derived from a supernumerary spikelet (SS) parent and an elite parent
    • Echeverry-Solarte M, Kumar A, Kianian SF, Mantovani E, McClean PE, Deckard EL, et al. Genome-wide mapping of spike-related and agronomic traits in a common wheat population derived from a supernumerary spikelet (SS) parent and an elite parent. Plant Genome. 2015;8. doi: 10.3835/plantgenome2014.12.0089.
    • (2015) Plant Genome. , vol.8
    • Echeverry-Solarte, M.1    Kumar, A.2    Kianian, S.F.3    Mantovani, E.4    McClean, P.E.5    Deckard, E.L.6
  • 10
    • 84934280040 scopus 로고    scopus 로고
    • New QTL alleles for quality-related traits in spring wheat revealed by RIL population derived from supernumerary × non-supernumerary spikelet genotypes
    • Echeverry-Solarte M, Kumar A, Kianian SF, Simsek S, Alamri MS, Mantovani E, et al. New QTL alleles for quality-related traits in spring wheat revealed by RIL population derived from supernumerary × non-supernumerary spikelet genotypes. Theor Appl Genet. 2015;128(5):893-912. doi: 10.1007/s00122-015-2478-0.
    • (2015) Theor Appl Genet. , vol.128 , Issue.5 , pp. 893-912
    • Echeverry-Solarte, M.1    Kumar, A.2    Kianian, S.F.3    Simsek, S.4    Alamri, M.S.5    Mantovani, E.6
  • 11
    • 34347399464 scopus 로고    scopus 로고
    • Genome plasticity a key factor in the success of polyploid wheat under domestication
    • Dubcovsky J, Dvorak J. Genome plasticity a key factor in the success of polyploid wheat under domestication. Science. 2007;316:1862-6.
    • (2007) Science , vol.316 , pp. 1862-1866
    • Dubcovsky, J.1    Dvorak, J.2
  • 12
    • 0016862453 scopus 로고
    • New method for mapping genes in human chromosomes
    • Goss S, Harris H. New method for mapping genes in human chromosomes. Nature. 1975;255:680-4.
    • (1975) Nature , vol.255 , pp. 680-684
    • Goss, S.1    Harris, H.2
  • 13
    • 84866326940 scopus 로고    scopus 로고
    • DNA repair and crossing over favor similar chromosome regions as discovered in radiation hybrid of Triticum
    • Kumar A, Bassi FM, Paux E, Al-Azzam O, Michalak de Jimenez M, Denton AM, et al. DNA repair and crossing over favor similar chromosome regions as discovered in radiation hybrid of Triticum. BMC Genomics. 2012;13:339.
    • (2012) BMC Genomics , vol.13 , pp. 339
    • Kumar, A.1    Bassi, F.M.2    Paux, E.3    Al-Azzam, O.4    Michalak de Jimenez, M.5    Denton, A.M.6
  • 14
    • 84868695543 scopus 로고    scopus 로고
    • Endosperm tolerance of paternal aneuploidy allows radiation-hybrid mapping of the wheat D-genome and a measure of γ-ray induced chromosome breaks
    • Tiwari VK, Riera-Lizarazu O, Gunn HL, Lopez K, Iqbal MJ, Kianian SF, et al. Endosperm tolerance of paternal aneuploidy allows radiation-hybrid mapping of the wheat D-genome and a measure of γ-ray induced chromosome breaks. PLoS One. 2012;7(11):e48815.
    • (2012) PLoS One , vol.7 , Issue.11 , pp. e48815
    • Tiwari, V.K.1    Riera-Lizarazu, O.2    Gunn, H.L.3    Lopez, K.4    Iqbal, M.J.5    Kianian, S.F.6
  • 15
    • 84868246638 scopus 로고    scopus 로고
    • Physical mapping resources for large plant genomes: radiation hybrids for wheat D-genome progenitor Aegilops tauschii accession AL8/78
    • Kumar A, Simons K, Iqbal MJ, de Jiménez M, Bassi FM, Ghavami F, et al. Physical mapping resources for large plant genomes: radiation hybrids for wheat D-genome progenitor Aegilops tauschii accession AL8/78. BMC Genomics. 2012;13:597.
    • (2012) BMC Genomics , vol.13 , pp. 597
    • Kumar, A.1    Simons, K.2    Iqbal, M.J.3    Jiménez, M.4    Bassi, F.M.5    Ghavami, F.6
  • 18
    • 84957708694 scopus 로고    scopus 로고
    • Radiation Hybrids: A valuable Tool for Genetic, Genomic and Functional Analysis of Plant Genomes
    • In: Tuberosa R, Graner A, Frison E, editors. Genomics of Plant Genetic Resources. Netherlands: Springer.
    • Kumar A, Bassi FM, Michalack de Jimenez M, Ghavami F, Mazaheri M, Simons K, et al. Radiation Hybrids: A valuable Tool for Genetic, Genomic and Functional Analysis of Plant Genomes. In: Tuberosa R, Graner A, Frison E, editors. Genomics of Plant Genetic Resources, vol. 1. Netherlands: Springer; 2014. p. 285-318.
    • (2014) , vol.1 , pp. 285-318
    • Kumar, A.1    Bassi, F.M.2    Michalack de Jimenez, M.3    Ghavami, F.4    Mazaheri, M.5    Simons, K.6
  • 20
    • 84875886528 scopus 로고    scopus 로고
    • Draft genome of the wheat A-genome progenitor Triticum urartu
    • Ling HQ, Zhao S, Liu D, Wang J, Sun H, Zhang C, et al. Draft genome of the wheat A-genome progenitor Triticum urartu. Nature. 2013;496:87-90.
    • (2013) Nature , vol.496 , pp. 87-90
    • Ling, H.Q.1    Zhao, S.2    Liu, D.3    Wang, J.4    Sun, H.5    Zhang, C.6
  • 21
    • 84875898037 scopus 로고    scopus 로고
    • Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    • Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, et al. Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation. Nature. 2013;496(7443):91-5.
    • (2013) Nature , vol.496 , Issue.7443 , pp. 91-95
    • Jia, J.1    Zhao, S.2    Kong, X.3    Li, Y.4    Zhao, G.5    He, W.6
  • 22
    • 77955951872 scopus 로고    scopus 로고
    • Chromosome genomics in the Triticeae
    • In: Feuillet C, Muehlbauer GJ, editors. Genetics and genomics of the Triticeae. Berlin: Springer
    • Doležel J, Šimková H, Kubaláková M, Šafář J, Suchánková P, Číhalíková J, et al. Chromosome genomics in the Triticeae. In: Feuillet C, Muehlbauer GJ, editors. Genetics and genomics of the Triticeae. Berlin: Springer; 2009. p. 285-316.
    • (2009) , pp. 285-316
    • Doležel, J.1    Šimková, H.2    Kubaláková, M.3    Šafář, J.4    Suchánková, P.5    Číhalíková, J.6
  • 26
    • 34548297174 scopus 로고    scopus 로고
    • A high resolution radiation hybrid map of bovine chromosome 14 identifies scaffold rearrangement in the latest bovine assembly
    • Marques E, de Givry S, Stothard P, Murdoch B, Wang Z, Womack J, et al. A high resolution radiation hybrid map of bovine chromosome 14 identifies scaffold rearrangement in the latest bovine assembly. BMC Genomics. 2007;8:254.
    • (2007) BMC Genomics , vol.8 , pp. 254
    • Marques, E.1    Givry, S.2    Stothard, P.3    Murdoch, B.4    Wang, Z.5    Womack, J.6
  • 27
    • 51649093982 scopus 로고    scopus 로고
    • A high-resolution radiation hybrid map of rhesus macaque chromosome 5 identifies rearrangements in the genome assembly
    • Karere GM, Froenicke L, Millon L, Womack JE, Lyons LA. A high-resolution radiation hybrid map of rhesus macaque chromosome 5 identifies rearrangements in the genome assembly. Genomics. 2008;92:210-8.
    • (2008) Genomics , vol.92 , pp. 210-218
    • Karere, G.M.1    Froenicke, L.2    Millon, L.3    Womack, J.E.4    Lyons, L.A.5
  • 28
    • 84867398457 scopus 로고    scopus 로고
    • Characterization of wheat DArT markers: genetic and functional features
    • Marone D, Panio G, Ficco DBM, Russo MA, De Vita P, et al. Characterization of wheat DArT markers: genetic and functional features. Mol Genet Genomics. 2012;287:741-53.
    • (2012) Mol Genet Genomics , vol.287 , pp. 741-753
    • Marone, D.1    Panio, G.2    Ficco, D.B.M.3    Russo, M.A.4    Vita, P.5
  • 29
    • 8744230085 scopus 로고    scopus 로고
    • A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.)
    • Somers DJ, Isaac P, Edwards K. A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.). Theor Appl Genet. 2004;109:1105-14.
    • (2004) Theor Appl Genet , vol.109 , pp. 1105-1114
    • Somers, D.J.1    Isaac, P.2    Edwards, K.3
  • 31
    • 33747837254 scopus 로고    scopus 로고
    • Diversity arrays technology (DArT) for high-throughput profiling of the hexaploid wheat genome
    • Akbari M, Wenzl P, Caig V, Carling J, Xia L, Yang S, et al. Diversity arrays technology (DArT) for high-throughput profiling of the hexaploid wheat genome. Theor Appl Genet. 2006;113:1409-20.
    • (2006) Theor Appl Genet , vol.113 , pp. 1409-1420
    • Akbari, M.1    Wenzl, P.2    Caig, V.3    Carling, J.4    Xia, L.5    Yang, S.6
  • 32
    • 79956000517 scopus 로고    scopus 로고
    • Enrichment of a common wheat genetic map and QTL mapping for fatty acid content in grain
    • Wang YY, Sun XY, Zhao Y, Kong FM, Guo Y, Zhang GZ, et al. Enrichment of a common wheat genetic map and QTL mapping for fatty acid content in grain. Plant Sci. 2011;181(1):65-75.
    • (2011) Plant Sci , vol.181 , Issue.1 , pp. 65-75
    • Wang, Y.Y.1    Sun, X.Y.2    Zhao, Y.3    Kong, F.M.4    Guo, Y.5    Zhang, G.Z.6
  • 34
    • 33747171699 scopus 로고    scopus 로고
    • Meiotic recombination hotspots in plants
    • Mézard C. Meiotic recombination hotspots in plants. Biochem Soc Trans. 2006;34:part 4.
    • (2006) Biochem Soc Trans , vol.34 , pp. part 4
    • Mézard, C.1
  • 35
    • 84883757684 scopus 로고    scopus 로고
    • Jackson S. The First 50 Plant Genomes
    • Michael TP, Jackson S. The First 50 Plant Genomes. Plant Genome. 2013; 6 (no. 2)
    • (2013) Plant Genome. , vol.6 , Issue.2
    • Michael, T.P.1
  • 36
    • 46849084979 scopus 로고    scopus 로고
    • Stem rust, tan spot, Stagonospora nodorum blotch, and hessian fly resistance in Langdon durum-Aegilops tauschii synthetic hexaploid wheat lines
    • Friesen TL, Xu SS, Harris MO. Stem rust, tan spot, Stagonospora nodorum blotch, and hessian fly resistance in Langdon durum-Aegilops tauschii synthetic hexaploid wheat lines. Crop Sci. 2008;48:1062-70.
    • (2008) Crop Sci , vol.48 , pp. 1062-1070
    • Friesen, T.L.1    Xu, S.S.2    Harris, M.O.3
  • 37
    • 17444404610 scopus 로고    scopus 로고
    • CARTHAGENE: multipopulation integrated genetic and radiated hybrid mapping
    • de Givry S, Bouchez M, Chabrier P, Milan D, Schiex T. CARTHAGENE: multipopulation integrated genetic and radiated hybrid mapping. Bioinformatics. 2005;21:1703-4.
    • (2005) Bioinformatics , vol.21 , pp. 1703-1704
    • Givry, S.1    Bouchez, M.2    Chabrier, P.3    Milan, D.4    Schiex, T.5
  • 40
    • 59449101593 scopus 로고    scopus 로고
    • Comparison of genetic and cytogenetic maps of hexaploid wheat (Triticum aestivum L.) using SSR and DArT markers
    • Francki MG, Walker E, Crawford AC, Broughton S, Ohm HW, Barclay I, et al. Comparison of genetic and cytogenetic maps of hexaploid wheat (Triticum aestivum L.) using SSR and DArT markers. Mol Genet Genomics. 2009;281:181-91.
    • (2009) Mol Genet Genomics , vol.281 , pp. 181-191
    • Francki, M.G.1    Walker, E.2    Crawford, A.C.3    Broughton, S.4    Ohm, H.W.5    Barclay, I.6
  • 41
    • 6944223154 scopus 로고    scopus 로고
    • Microsatellite-based deletion bin system for the establishment of genetic-physical map relationships in wheat (Triticum aestivum L.)
    • Sourdille P, Singh S, Cadalen T, Brown-Guedira GL, Gay G, et al. Microsatellite-based deletion bin system for the establishment of genetic-physical map relationships in wheat (Triticum aestivum L.). Funct Integr Genomics. 2004;4:12-25.
    • (2004) Funct Integr Genomics. , vol.4 , pp. 12-25
    • Sourdille, P.1    Singh, S.2    Cadalen, T.3    Brown-Guedira, G.L.4    Gay, G.5
  • 42
    • 0036256695 scopus 로고    scopus 로고
    • MapChart: software for the graphical presentation of linkage maps and QTLs
    • Voorrips RE. MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered. 2002;93:77-8.
    • (2002) J Hered , vol.93 , pp. 77-78
    • Voorrips, R.E.1
  • 43
    • 33847255798 scopus 로고    scopus 로고
    • AutoGRAPH: an interactive web server for automating and visualizing comparative genome maps
    • Derrien T, Andre C, Galibert F, Hitte C. AutoGRAPH: an interactive web server for automating and visualizing comparative genome maps. Bioinformatics. 2007;23(4):498-9.
    • (2007) Bioinformatics , vol.23 , Issue.4 , pp. 498-499
    • Derrien, T.1    Andre, C.2    Galibert, F.3    Hitte, C.4


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