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Volumn 106, Issue 5, 2015, Pages 265-267

PAFFT: A new homology search algorithm for third-generation sequencers

Author keywords

Homology search; Third generation sequencer

Indexed keywords

ALGORITHM; ARTICLE; CALCULATION; CHLOROPLAST GENOME; COMPUTER SIMULATION; CONTROLLED STUDY; MATHEMATICAL ANALYSIS; NONHUMAN; POTENTILLA; POTENTILLA MICRANTHA; PRIORITY JOURNAL; DNA SEQUENCE; PROCEDURES; SEQUENCE HOMOLOGY;

EID: 84944904408     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2015.09.005     Document Type: Article
Times cited : (1)

References (15)
  • 2
    • 84865591846 scopus 로고    scopus 로고
    • A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers
    • Quail M.A., Smith M., Coupland P., Otto T.D., Harris S.R., Connor T.R., Bertoni A., Swerdlow H.P., Gu Y. A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers. BMC Genomics 2012, 13:341.
    • (2012) BMC Genomics , vol.13 , pp. 341
    • Quail, M.A.1    Smith, M.2    Coupland, P.3    Otto, T.D.4    Harris, S.R.5    Connor, T.R.6    Bertoni, A.7    Swerdlow, H.P.8    Gu, Y.9
  • 3
    • 0037100671 scopus 로고    scopus 로고
    • MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
    • Katoh K., Misawa K., Kuma K., Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 2002, 30:3059-3066.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 3059-3066
    • Katoh, K.1    Misawa, K.2    Kuma, K.3    Miyata, T.4
  • 5
    • 0035863762 scopus 로고    scopus 로고
    • The estimation of statistical parameters for local alignment score distributions
    • Altschul S.F., Bundschuh R., Olsen R., Hwa T. The estimation of statistical parameters for local alignment score distributions. Nucleic Acids Res. 2001, 29:351-361.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 351-361
    • Altschul, S.F.1    Bundschuh, R.2    Olsen, R.3    Hwa, T.4
  • 6
    • 84917737637 scopus 로고    scopus 로고
    • Mappability and read length
    • Li W., Freudenberg J. Mappability and read length. Front. Genet. 2014, 5:381.
    • (2014) Front. Genet. , vol.5 , pp. 381
    • Li, W.1    Freudenberg, J.2
  • 7
    • 83855165105 scopus 로고    scopus 로고
    • Repetitive DNA and next-generation sequencing: computational challenges and solutions
    • Treangen T.J., Salzberg S.L. Repetitive DNA and next-generation sequencing: computational challenges and solutions. Nat. Rev. Genet. 2012, 13:36-46.
    • (2012) Nat. Rev. Genet. , vol.13 , pp. 36-46
    • Treangen, T.J.1    Salzberg, S.L.2
  • 8
    • 84878479218 scopus 로고    scopus 로고
    • RF: a method for filtering short reads with tandem repeats for genome mapping
    • Misawa K. RF: a method for filtering short reads with tandem repeats for genome mapping. Genomics 2013, 102:35-37.
    • (2013) Genomics , vol.102 , pp. 35-37
    • Misawa, K.1
  • 9
  • 10
    • 84958156266 scopus 로고
    • Limiting forms of the frequency distribution of the largest or smallest member of a sample
    • Fisher R.A., Tippett L.H.C. Limiting forms of the frequency distribution of the largest or smallest member of a sample. Proc Cambridge Philos Soc 1928, 24:180-190.
    • (1928) Proc Cambridge Philos Soc , vol.24 , pp. 180-190
    • Fisher, R.A.1    Tippett, L.H.C.2
  • 12
    • 79961109552 scopus 로고    scopus 로고
    • A codon substitution model that incorporates the effect of the GC contents, the gene density and the density of CpG islands of human chromosomes
    • Misawa K. A codon substitution model that incorporates the effect of the GC contents, the gene density and the density of CpG islands of human chromosomes. BMC Genomics 2011, 12:397.
    • (2011) BMC Genomics , vol.12 , pp. 397
    • Misawa, K.1
  • 13
    • 84866266717 scopus 로고    scopus 로고
    • Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory
    • Chaisson M.J., Tesler G. Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory. BMC Bioinformatics 2012, 13:238.
    • (2012) BMC Bioinformatics , vol.13 , pp. 238
    • Chaisson, M.J.1    Tesler, G.2
  • 15
    • 84870237757 scopus 로고    scopus 로고
    • Insights into phylogeny, sex function and age of Fragaria based on whole chloroplast genome sequencing
    • Njuguna W., Liston A., Cronn R., Ashman T.L., Bassil N. Insights into phylogeny, sex function and age of Fragaria based on whole chloroplast genome sequencing. Mol. Phylogenet. Evol. 2013, 66:17-29.
    • (2013) Mol. Phylogenet. Evol. , vol.66 , pp. 17-29
    • Njuguna, W.1    Liston, A.2    Cronn, R.3    Ashman, T.L.4    Bassil, N.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.