Aptamer based turn-off fluorescent ATP assay using DNA concatamers

Microchimica Acta

Volumn 182, Issue 15-16, 2015, Pages 2387-2393

  Qiu, Huazhang ^a   Liu, Zong’en ^a   Huang, Zhengjun ^a   Chen, Min ^a   Cai, Xiaohui ^a   Weng, Shaohuang ^a   Lin, Xinhua ^a  

^a FUJIAN MEDICAL UNIVERSITY   (China)

Author keywords

Aptamer; ATP; dsDNA concatamers; Signal off fluorescence; Sybr Green I

Indexed keywords

EID: 84944515114     PISSN: 00263672     EISSN: 14365073     Source Type: Journal    
DOI: 10.1007/s00604-015-1578-5     Document Type: Article

References (28)

1. Dirks RM, Pierce NA (2004) Triggered amplification by hybridization chain reaction. Proc Natl Acad Sci U S A 101:15275–15278
2. Chen Y, Xu J, Su J, Xiang Y, Yuan R, Chai YQ (2012) In situ hybridization chain reaction amplification for universal and highly sensitive electrochemiluminescent detection of DNA. Anal Chem 84:7750–7755
3. Zhang B, Liu BQ, Tang DP, Niessner R, Chen GN, Knopp D (2012) DNA-based hybridization chain reaction for amplified bioelectronic signal and ultrasensitive detection of proteins. Anal Chem 84:5392–5399
4. Shimron S, Wang F, Orbach R, Willner I (2011) Amplified detection of DNA through the enzyme-free autonomous assembly of hemin/G-quadruplex DNAzyme nanowires. Anal Chem 84:1042–1048
5. Saiki RK, Gelfand DH, Stoffel S, Scharf SJ, Higuchi R, Horn GT, Mullis KB, Erlich HA (1988) Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239:487–491
6. Wu JB, Kodzius R, Cao WB, Wen WJ (2014) Extraction, amplification and detection of DNA in microfluidic chip-based assays. Microchim Acta 181:1611–1631
7. Su C, Liu YF, Ye T, Xiang X, Ji XH, He ZK (2015) Rolling cycle amplification based single-color quantum dots–ruthenium complex assembling dyads for homogeneous and highly selective detection of DNA. Anal Chim Acta 853:495–500
8. Xia F, White RJ, Zuo X, Patterson A, Xiao Y, Kang D, Gong X, Plaxco KW, Heeger AJ (2010) An electrochemical supersandwich assay for sensitive and selective DNA detection in complex matrices. J Am Chem Soc 132:14346–14348
9. Shen JW, Li YB, Gu HS, Xia F, Zuo XL (2014) Recent development of sandwich assay based on the nanobiotechnologies for proteins, nucleic acids, small molecules, and ions. Chem Rev 114:7631–7677
10. Hong CY, Chen X, Liu T, Li J, Yang HH, Chen JH, Chen GN (2013) Ultrasensitive electrochemical detection of cancer-associated circulating microRNA in serum samples based on DNA concatamers. Biosens Bioelectron 50:132–136
11. Huang JH, Su XF, Li ZG (2012) Enzyme-free and amplified fluorescence DNA detection using bimolecular beacons. Anal Chem 84:5939–5943
12. Zhao JJ, Chu ZD, Jin X, Zhao SL (2015) A fluorescence polarization assay for nucleic acid based on the amplification of hybridization chain reaction and nanoparticles. Sensors Actuators B Chem 209:116–121
13. Huang J, Wu YR, Chen Y, Zhu Z, Yang XH, Yang CYJ, Wang KM, Tan WH (2011) Pyrene-excimer probes based on the hybridization chain reaction for the detection of nucleic acids in complex biological fluids. Angew Chem Int Ed 50:401–404
14. Stubbe J (1990) Ribonucleotide reductases: amazing and confusing. J Biol Chem 265:5329–5332
15. Fields RD, Burnstock G (2006) Purinergic signalling in neuron–glia interactions. Nat Rev Neurosci 7:423–436
16. Lin CS, Chen YY, Cai ZX, Zhu Z, Jiang YQ, Yang CYJ, Chen X (2015) A label-free fluorescence strategy for sensitive detection of ATP based on the ligation-triggered super-sandwich. Biosens Bioelectron 63:562–565
17. Kennedy HJ, Pouli AE, Ainscow EK, Jouaville LS, Rizzuto R, Rutter GA (1999) Glucose generates Sub-plasma membrane ATP microdomains in single islet β-cells: potential role for strategically located mitochondria. J Biol Chem 274:13281–13291
18. Zhou L, Xue XF, Zhou JH, Li Y, Zhao J, Wu LM (2012) Fast determination of adenosine 5′-triphosphate (ATP) and its catabolites in royal jelly using ultraperformance liquid chromatography. J Agric Food Chem 60:8994–8999
19. He YF, Liao LF, Xu CH, Wu RR, Li SJ, Yang YY (2015) Determination of ATP by resonance light scattering using a binuclear uranyl complex and aptamer modified gold nanoparticles as optical probes. Microchim Acta 182:419–426
20. Zyryanov GV, Palacios MA, Anzenbacher PJ (2007) Rational design of a fluorescence-turn-on sensor array for phosphates in blood serum. Angew Chem Int Ed 46:7849–7852
21. Famulok M, Hartig JS, Mayer G (2007) Functional aptamers and aptazymes in biotechnology, diagnostics, and therapy. Chem Rev 107:3715–3743
22. Tan WH, Donovan MJ, Jiang JH (2013) Aptamers from cell-based selection for bioanalytical applications. Chem Rev 113:2842–2862
23. Jiang YN, Liu NN, Guo W, Xia F, Jiang L (2012) Highly-efficient gating of solid-state nanochannels by DNA supersandwich structure containing ATP aptamers: a nanofluidic IMPLICATION logic device. J Am Chem Soc 134:15395–15401
24. Gao PY, Xia YF, Yang LL, Ma TF, Yang L, Guo QQ, Huang SS (2014) Aptasensor for adenosine triphosphate based on electrode-supported lipid bilayer membrane. Microchim Acta 181:205–212
25. Huizenga DE, Szostak JW (1995) A DNA aptamer that binds adenosine and ATP. Biochemistry 34:656–665
26. He XX, Li ZX, Jia XK, Wang KM, Yin JJ (2013) A highly selective sandwich-type FRET assay for ATP detection based on silica coated photon upconverting nanoparticles and split aptamer. Talanta 111:105–110
27. Kashefi-Kheyrabadi L, Mehrgardi MA (2012) Aptamer-conjugated silver nanoparticles for electrochemical detection of adenosine triphosphate. Biosens Bioelectron 37:94–98
28. Qiu HZ, Wu NM, Zheng YJ, Chen M, Weng SH, Chen YZ, Lin XH (2015) A robust and versatile signal-on fluorescence sensing strategy based on SYBR green I dye and graphene oxide. Int J Nanomedicine 10:147–156