-
1
-
-
85099688310
-
Making big data useful for health care: A summary of the inaugural mit critical data conference
-
25600172
-
Badawi O, Brennan T, Celi LA, Feng M, Ghassemi M, Ippolito A, et al. Making big data useful for health care: a summary of the inaugural mit critical data conference. JMIRMed Inform. 2014;2:e22. doi: 10. 2196/medinform.3447 PMID: 25600172
-
(2014)
JMIRMed Inform
, vol.2
, pp. e22
-
-
Badawi, O.1
Brennan, T.2
Celi, L.A.3
Feng, M.4
Ghassemi, M.5
Ippolito, A.6
-
2
-
-
84946069451
-
UniProt: A hub for protein information
-
25348405
-
Uni Prot Consortium. UniProt: a hub for protein information. Nucleic Acids Res. 2015;43:D204-12. doi: 10.1093/nar/gku989 PMID: 25348405
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D204-D212
-
-
Uni Prot Consortium1
-
3
-
-
84922516060
-
RLIMS-P: An online text-mining tool for literaturebased extraction of protein phosphorylation information
-
Torii M, Li G, Li Z, Oughtred R, Diella F, Celen I, et al. RLIMS-P: an online text-mining tool for literaturebased extraction of protein phosphorylation information. Database. 2014;2014. doi: 10.1093/database/bau081
-
(2014)
Database. 2014
-
-
Torii, M.1
Li, G.2
Li, Z.3
Oughtred, R.4
Diella, F.5
Celen, I.6
-
4
-
-
84883572716
-
PubTator: A web-based text mining tool for assisting biocuration
-
23703206
-
Wei C-H, Kao H-Y, Lu Z. PubTator: a web-based text mining tool for assisting biocuration. Nucleic Acids Res. 2013;41:W518-22. doi: 10.1093/nar/gkt441 PMID: 23703206
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. W518-W522
-
-
Wei, C.-H.1
Kao, H.-Y.2
Lu, Z.3
-
5
-
-
51049110331
-
Linking genes to literature: Text mining, information extraction, and retrieval applications for biology
-
18834499
-
Krallinger M, Valencia A, Hirschman L. Linking genes to literature: text mining, information extraction, and retrieval applications for biology. Genome Biol. 2008;9 Suppl 2:S8. doi: 10.1186/gb-2008-9-s2-s8 PMID: 18834499
-
(2008)
Genome Biol.
, vol.9
, pp. S8
-
-
Krallinger, M.1
Valencia, A.2
Hirschman, L.3
-
6
-
-
33947321307
-
Overview of BioCreAtIvE task 1B: Normalized gene lists
-
15960823
-
Hirschman L, Colosimo M, Morgan A, Yeh A. Overview of BioCreAtIvE task 1B: normalized gene lists. BMC Bioinformatics. 2005;6 Suppl 1:S11. PMID: 15960823
-
(2005)
BMC Bioinformatics
, vol.6
, pp. S11
-
-
Hirschman, L.1
Colosimo, M.2
Morgan, A.3
Yeh, A.4
-
7
-
-
41349103793
-
Overview of BioCreative II gene normalization
-
18834494
-
Morgan AA, Lu Z, Wang X, Cohen AM, Fluck J, Ruch P, et al. Overview of BioCreative II gene normalization. Genome Biol. 2008;9 Suppl 2:S3. doi: 10.1186/gb-2008-9-s2-s3 PMID: 18834494
-
(2008)
Genome Biol.
, vol.9
, pp. S3
-
-
Morgan, A.A.1
Lu, Z.2
Wang, X.3
Cohen, A.M.4
Fluck, J.5
Ruch, P.6
-
8
-
-
37849034558
-
ProMiner: Recognition of human gene and protein names using regularly updated dictionaries
-
Madrid Spain
-
Fluck J, Mevissen HT, Dach H, Oster M, Hofmann-Apitius M. ProMiner: recognition of human gene and protein names using regularly updated dictionaries. Second BioCreAtIvE Challenge Workshop: Critical Assessment of Information Extraction in Molecular Biology; Madrid Spain. 2007. pp. 149-152.
-
(2007)
Second BioCreAtIvE Challenge Workshop: Critical Assessment of Information Extraction in Molecular Biology
, pp. 149-152
-
-
Fluck, J.1
Mevissen, H.T.2
Dach, H.3
Oster, M.4
Hofmann-Apitius, M.5
-
9
-
-
49549120418
-
Inter-species normalization of gene mentions with GNAT
-
18689813
-
Hakenberg J, Plake C, Leaman R, Schroeder M, Gonzalez G. Inter-species normalization of gene mentions with GNAT. Bioinformatics. 2008;24:i126-132. doi: 10.1093/bioinformatics/btn299 PMID: 18689813
-
(2008)
Bioinformatics
, vol.24
, pp. i126-i132
-
-
Hakenberg, J.1
Plake, C.2
Leaman, R.3
Schroeder, M.4
Gonzalez, G.5
-
10
-
-
62549162626
-
High-performance gene name normalization with GeNo
-
19188193
-
Wermter J, Tomanek K, Hahn U. High-performance gene name normalization with GeNo. Bioinformatics. 2009;25:815-821. doi: 10.1093/bioinformatics/btp071 PMID: 19188193
-
(2009)
Bioinformatics
, vol.25
, pp. 815-821
-
-
Wermter, J.1
Tomanek, K.2
Hahn, U.3
-
12
-
-
80052774027
-
The gene normalization task in BioCreative III
-
22151901
-
Lu Z, Kao H-Y, Wei C-H, Huang M, Liu J, Kuo C-J, et al. The gene normalization task in BioCreative III. BMC Bioinformatics. 2011;12 Suppl 8:S2. doi: 10.1186/1471-2105-12-S8-S2 PMID: 22151901
-
(2011)
BMC Bioinformatics
, vol.12
, pp. S2
-
-
Lu, Z.1
Kao, H.-Y.2
Wei, C.-H.3
Huang, M.4
Liu, J.5
Kuo, C.-J.6
-
14
-
-
77955464970
-
Multistage gene normalization and SVM-based ranking for protein interactor extraction in full-text articles
-
20479501
-
Dai H-J, Lai P-T, Tsai RT-H. Multistage gene normalization and SVM-based ranking for protein interactor extraction in full-text articles. IEEE/ACM Trans Comput Biol Bioinform. 2010;7:412-420. doi: 10. 1109/TCBB.2010.45 PMID: 20479501
-
(2010)
IEEE/ACM Trans Comput Biol Bioinform
, vol.7
, pp. 412-420
-
-
Dai, H.-J.1
Lai, P.-T.2
Tsai, R.T.-H.3
-
15
-
-
79953325924
-
GeneTUKit: A software for document-level gene normalization
-
21303863
-
Huang M, Liu J, Zhu X. GeneTUKit: a software for document-level gene normalization. Bioinformatics. 2011;27:1032-1033. doi: 10.1093/bioinformatics/btr042 PMID: 21303863
-
(2011)
Bioinformatics
, vol.27
, pp. 1032-1033
-
-
Huang, M.1
Liu, J.2
Zhu, X.3
-
16
-
-
80053432627
-
Cross-species gene normalization by species inference
-
22151999
-
Wei C-H, Kao H-Y. Cross-species gene normalization by species inference. BMC Bioinformatics. 2011;12 Suppl 8:S5. doi: 10.1186/1471-2105-12-S8-S5 PMID: 22151999
-
(2011)
BMC Bioinformatics
, vol.12
, pp. S5
-
-
Wei, C.-H.1
Kao, H.-Y.2
-
17
-
-
84861856856
-
SR4GN: A species recognition software tool for gene normalization
-
22679507
-
Wei C-H, Kao H-Y, Lu Z. SR4GN: a species recognition software tool for gene normalization. PLoS One. 2012;7:e38460. doi: 10.1371/journal.pone.0038460 PMID: 22679507
-
(2012)
PLoS One
, vol.7
, pp. e38460
-
-
Wei, C.-H.1
Kao, H.-Y.2
Lu, Z.3
-
18
-
-
84876273527
-
Large-scale event extraction from literature with multi-level gene normalization
-
23613707
-
Van Landeghem S, Björne J, Wei C-H, Hakala K, Pyysalo S, Ananiadou S, et al. Large-scale event extraction from literature with multi-level gene normalization. PLoS One. 2013;8:e55814. doi: 10.1371/journal.pone.0055814 PMID: 23613707
-
(2013)
PLoS One
, vol.8
, pp. e55814
-
-
Van Landeghem, S.1
Björne, J.2
Wei, C.-H.3
Hakala, K.4
Pyysalo, S.5
Ananiadou, S.6
-
19
-
-
84942571158
-
-
Arabidopsis nomenclature [http://www.arabidopsis.org/portals/nomenclature/guidelines.jsp]
-
Arabidopsis Nomenclature
-
-
-
20
-
-
0035543158
-
Guidelines for genetic nomenclature and community governance for the model legume Medicagotruncatula
-
11768530
-
Vanden Bosch KA, Frugoli J. Guidelines for genetic nomenclature and community governance for the model legume Medicagotruncatula. Mol Plant Microbe Interact. 2001;14:1364-1367. PMID: 11768530
-
(2001)
Mol Plant Microbe Interact
, vol.14
, pp. 1364-1367
-
-
Vanden Bosch, K.A.1
Frugoli, J.2
-
21
-
-
44849084901
-
Standardized gene nomenclature for the Brassica genus
-
18492252
-
Ostergaard L, King GJ. Standardized gene nomenclature for the Brassica genus. Plant Methods. 2008;4:10. doi: 10.1186/1746-4811-4-10 PMID: 18492252
-
(2008)
Plant Methods
, vol.4
, pp. 10
-
-
Ostergaard, L.1
King, G.J.2
-
22
-
-
84924339494
-
The grapevine gene nomenclature system
-
25481684
-
Grimplet J, Adam-Blondon A-F, Bert P-F, Bitz O, Cantu D, Davies C, et al. The grapevine gene nomenclature system. BMC Genomics. 2014;15:1077. doi: 10.1186/1471-2164-15-1077 PMID: 25481684
-
(2014)
BMC Genomics
, vol.15
, pp. 1077
-
-
Grimplet, J.1
Adam-Blondon, A.-F.2
Bert, P.-F.3
Bitz, O.4
Cantu, D.5
Davies, C.6
-
25
-
-
46249123634
-
Integrating high dimensional bi-directional parsing models for gene mention tagging
-
18586726
-
Hsu C-N, Chang Y-M, Kuo C-J, Lin Y-S, Huang H-S, Chung I-F. Integrating high dimensional bi-directional parsing models for gene mention tagging. Bioinformatics. 2008;24:i286-94. doi: 10.1093/bioinformatics/btn183 PMID: 18586726
-
(2008)
Bioinformatics
, vol.24
, pp. i286-i294
-
-
Hsu, C.-N.1
Chang, Y.-M.2
Kuo, C.-J.3
Lin, Y.-S.4
Huang, H.-S.5
Chung, I.-F.6
-
26
-
-
40549140499
-
BANNER: An executable survey of advances in biomedical named entity recognition
-
18229723
-
Leaman R, Gonzalez G. BANNER: an executable survey of advances in biomedical named entity recognition. Pac Symp Biocomput. 2008;652-663. PMID: 18229723
-
(2008)
Pac Symp Biocomput
, pp. 652-663
-
-
Leaman, R.1
Gonzalez, G.2
-
27
-
-
77955439720
-
Exploring speciesbased strategies forgene normalization
-
20671318
-
Verspoor K, Roeder C, Johnson HL, Cohen KB, Baumgartner WA Jr, Hunter LE. Exploring speciesbased strategies forgene normalization. IEEE/ACM Trans Comput Biol Bioinform. 2010;7:462-471. doi: 10.1109/TCBB.2010.48 PMID: 20671318
-
(2010)
IEEE/ACM Trans Comput Biol Bioinform
, vol.7
, pp. 462-471
-
-
Verspoor, K.1
Roeder, C.2
Johnson, H.L.3
Cohen, K.B.4
Baumgartner, W.A.5
Hunter, L.E.6
-
28
-
-
0031633368
-
Toward information extraction: Identifying protein names from biological papers
-
9697224
-
Fukuda K, Tamura A, Tsunoda T, Takagi T. Toward information extraction: identifying protein names from biological papers. Pac Symp Biocomput. 1998;707-718. PMID: 9697224
-
(1998)
Pac Symp Biocomput
, pp. 707-718
-
-
Fukuda, K.1
Tamura, A.2
Tsunoda, T.3
Takagi, T.4
-
30
-
-
80053651587
-
GenBank
-
23193287
-
Benson DA, Cavanaugh M, Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, et al. GenBank. Nucleic Acids Res. 2013;41:D36-42. doi: 10.1093/nar/gks1195 PMID: 23193287
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D36-D42
-
-
Benson, D.A.1
Cavanaugh, M.2
Clark, K.3
Karsch-Mizrachi, I.4
Lipman, D.J.5
Ostell, J.6
-
31
-
-
0041627757
-
A simple algorithm for identifying abbreviation definitions in biomedical text
-
12603049
-
Schwartz AS, Hearst MA. A simple algorithm for identifying abbreviation definitions in biomedical text. Pac Symp Biocomput. 2003;451-462. PMID: 12603049
-
(2003)
Pac Symp Biocomput
, pp. 451-462
-
-
Schwartz, A.S.1
Hearst, M.A.2
-
32
-
-
84872542427
-
-
IEEE
-
Peng Y, Tudor CO, Torii M, Wu CH, Vijay-Shanker K. iSimp: A sentence simplification system for biomedicailtext. 2012 IEEE International Conference on Bioinformatics and Biomedicine. IEEE; pp. 1-6.
-
ISimp: A Sentence Simplification System for Biomedicailtext. 2012 IEEE International Conference on Bioinformatics and Biomedicine
, pp. 1-6
-
-
Peng, Y.1
Tudor, C.O.2
Torii, M.3
Wu, C.H.4
Vijay-Shanker, K.5
-
33
-
-
0026966646
-
A training algorithm for optimal margin classifiers
-
New York, NY, USA: ACM
-
Boser BE, Guyon IM, Vapnik VN. A Training Algorithm for Optimal Margin Classifiers. Proceedings of the Fifth Annual Workshop on Computational Learning Theory. New York, NY, USA: ACM; 1992. pp. 144-152.
-
(1992)
Proceedings of the Fifth Annual Workshop on Computational Learning Theory
, pp. 144-152
-
-
Boser, B.E.1
Guyon, I.M.2
Vapnik, V.N.3
-
35
-
-
4944229711
-
GENIA corpus-a semantically annotated corpus for bio-textmining
-
12855455
-
Kim J-D, Ohta T, Tateisi Y, Tsujii J. GENIA corpus-a semantically annotated corpus for bio-textmining. Bioinformatics. 2003;19:i180-i182. PMID: 12855455
-
(2003)
Bioinformatics
, vol.19
, pp. i180-i182
-
-
Kim J.-D..1
Ohta, T.2
Tateisi, Y.3
Tsujii, J.4
-
36
-
-
33846115034
-
Integrated annotation for biomedical information extraction
-
Kulick S, Bies A, Liberman M, Mandel M, McDonald R, Palmer M, et al. Integrated annotation for biomedical information extraction. Proc of the Human Language Technology Conference and the Annual Meeting of the North American Chapter of the Association for Computational Linguistics (HLT/NAACL). 2004. pp. 61-68.
-
(2004)
Proc of the Human Language Technology Conference and the Annual Meeting of the North American Chapter of the Association for Computational Linguistics (HLT/NAACL)
, pp. 61-68
-
-
Kulick, S.1
Bies, A.2
Liberman, M.3
Mandel, M.4
McDonald, R.5
Palmer, M.6
-
39
-
-
84876946919
-
The brassinosteroid signaling pathway-new key players and interconnections with other signaling networks crucial for plant development and stress tolerance
-
23615468
-
Gruszka D. The brassinosteroid signaling pathway-new key players and interconnections with other signaling networks crucial for plant development and stress tolerance. Int J Mol Sci. 2013;14:8740-8774. doi: 10.3390/ijms14058740 PMID: 23615468
-
(2013)
Int J Mol Sci.
, vol.14
, pp. 8740-8774
-
-
Gruszka, D.1
-
40
-
-
84891768588
-
Protein Ontology: A controlled structured network of protein entities
-
24270789
-
Natale DA, Arighi CN, Blake JA, Bult CJ, Christie KR, Cowart J, et al. Protein Ontology: a controlled structured network of protein entities. Nucleic Acids Res. 2014;42:D415-21. doi: 10.1093/nar/gkt1173 PMID: 24270789
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D415-D421
-
-
Natale, D.A.1
Arighi, C.N.2
Blake, J.A.3
Bult, C.J.4
Christie, K.R.5
Cowart, J.6
|