Discovery and characterization of new O-methyltransferase from the genome of the lignin-degrading fungus Phanerochaete chrysosporium for enhanced lignin degradation

Enzyme and Microbial Technology

Volumn 82, Issue , 2016, Pages 66-73

  Thanh Mai Pham, Le ^a   Kim, Yong Hwan ^a  

^a Kwangwoon University   (South Korea)

Author keywords

Free phenolic compounds; Lignin peroxidase; O Methyltransferase; White rot fungi

Indexed keywords

AMINO ACIDS; BIOINFORMATICS; BIOLOGY; FUNGI; PHENOLS;

BIOLOGICAL FUNCTIONS; HETEROLOGOUS EXPRESSION; LIGNIN PEROXIDASE; O-METHYLTRANSFERASE; PHANEROCHAETE CHRYSOSPORIUM; PHENOLIC COMPOUNDS; WHITE ROT FUNGI; WHITE-ROT BASIDIOMYCETES;

LIGNIN;

5' ADENOSYLMETHIONINE PARA TOLUENESULFONATE; HYDROXYL GROUP; LIGNIN; LIGNIN PEROXIDASE; METHYLTRANSFERASE; O METHYLTRANSFERASE; PHENOL DERIVATIVE; UNCLASSIFIED DRUG; FUNGAL DNA; FUNGAL PROTEIN; HYBRID PROTEIN; S ADENOSYLMETHIONINE;

AMINO ACID SEQUENCE; ARTICLE; BASIDIOMYCETES; BIOLOGICAL FUNCTIONS; DEGRADATION; FUNGAL GENOME; GENE SEQUENCE; HETEROLOGOUS EXPRESSION; METHYLATION; NONHUMAN; PHANEROCHAETE; PHYLOGENY; PROTEIN EXPRESSION; WHITE ROT FUNGUS; BIOREMEDIATION; COMPARATIVE STUDY; CORIOLACEAE; ENZYME SPECIFICITY; ENZYMOLOGY; ESCHERICHIA COLI; FUNGAL GENE; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR CLONING; MOLECULAR MODEL; PROTEIN CONFORMATION; SPECIES DIFFERENCE;

DEGRADATION; FUNGI; GENES; LIGNINS;

BIODEGRADATION, ENVIRONMENTAL; CLONING, MOLECULAR; CORIOLACEAE; DNA, FUNGAL; ESCHERICHIA COLI; FUNGAL PROTEINS; GENES, FUNGAL; LIGNIN; METHYLATION; METHYLTRANSFERASES; MODELS, MOLECULAR; PHANEROCHAETE; PHENOLS; PROTEIN CONFORMATION; RECOMBINANT FUSION PROTEINS; S-ADENOSYLMETHIONINE; SPECIES SPECIFICITY; SUBSTRATE SPECIFICITY;

EID: 84942540602     PISSN: 01410229     EISSN: 18790909     Source Type: Journal    
DOI: 10.1016/j.enzmictec.2015.08.016     Document Type: Article

References (28)

1. Somerville C., Bauer S., Johnson D.K., Adney W.S., Nimlos M.R., Brady J., Foust T.D. Biomass recalcitrance: engineering plant and enzymes for biofuels production. Science 2007, 315:804-807.
2. Tien M., Kirk T.K. LIgnin-degrading enzyme from the hymenomycete phanerochaete chrysosporium burds. Science 1983, 221(4611):661-663.
3. Hammel K.E., Jensen K.A., Mozuch M.D., Landucci L.L., Tien M., Pease E.A. Ligninolysis by a purified lignin peroxidase. J. Biol. Chem. 1993, 268(17):12274-12281.
4. Caramelo L., Martínez M.J., Martínez A.T. A search for ligninolytic peroxidases in the fungus Pleurotus eryngii involving α-keto-(-thiomethylbutyric acid and lignin model dimmers. Appl. Environ. Microbiol. 1999, 65:916-922.
5. Gold M.H., Youngs H.L., Gelpke M.D. Manganese peroxidase. Met. Ions Biol. Syst. 2000, 37:559-586.
6. Kirk T.K., Farrell R.L. Enzymatic combustion: the microbial degradation of lignin. Annu. Rev. Microbiol. 1987, 41:465-505.
7. Martinez A.T., Speranza M., Ruiz-Duenas F.J., Ferreira P., Camarero S., Guillen F., Martinez M.J., Gutierrez A., Rio J.C. Biodegradation of lignocellulosics: microbial, chemical, and enzymatic aspects of the fungal attack of lignin. Int. Microbiol. 2005, 8:195-204.
8. Pham L.T.M., Eom M.H., Kim Y.H. Inactivating effect of phenolic unit structures on the biodegradation of lignin by lignin peroxidase from Phanerochaete chrysosporium. Enzyme Microb. Technol. 2014, 61-62:48-54.
9. Pham L.T.M., Kim Y.H. Accelerated degradation of lignin by lignin peroxidase isozyme H8 (LiPH8) from Phanerochaete chrysosporium with engineered 4-O-methyltransferase from Clarkia breweri. Enzyme Microb. Technol. 2014, 66:74-79.
10. Coulter C., Kennedy J., McRroberts W., Harper B. Purification and properties of an S-adenosylmethionines: 2,4-disubstituted phenol O-methyltransferase from Phanerochaete chrysosporium. Appl. Environ. Microbiol. 1993, 59(3):706-711.
11. Jeffers M.R., Harper D.B. Identification of phenolic 3-O-methyltransferase in lignin-degrading fungus Phanerochaete chrysosporium. Microbiology 1997, 143:1975-1981.
12. Ohm R., Riley R., Salamov A., Min B., Choi I.G., Grigoriev I.V. Genomics of wood-degrading fungi. Fungal Genet. Biol. 2014, 72:82-90.
13. Binder M., Justo A., Reley R., Salamov A., López-Giráldez F., Sjökvist E., Copeland A., Foster B., Sun H., Larsson E., Larsson K.H., Townsend J., Grigoriev I.V., Hibbett D.S. Phylogenetic and phylogenomic overview of the polyporales. Mycologia 2013, 105(6):1350-1373.
14. Fernandez-Fueyo E., et al. Comparative genomics of ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis. PNAS 2012, 109(14):5458-5463.
15. Floudas D., et al. The Paleoxoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science 2012, 336(6089):1715-1719.
16. Grigoriev I.V., Nikitin R., Haridas S., Kuo A., Ohm R., Otillar R., Riley R., Salamov A., Zhao X., Korzeniewski F., Smirnova T., Nordberg H., Dubchak I., Shabalov I. MycoCosm portal: gearing up for 1000 fungal genomes. Nucleic Acids Res. 2014, 42(1):699-704.
17. Jones P., Binns D., avid C., hang H., Fraser M., Li W., McAnulla C., McWilliam H., Maslen J., Mitchell A., Nuka G., Pesseat S., Quinn A.F., Sangrador-Vegas A., Scheremetjew M., Yong S.Y., Lopez R., Hunter S. InterProScan 5: genome-scale protein function classification. Bioinformatics 2014, 30(9):1236-1240.
18. Gasteiger E., Hoogland C., Gattiker A., Duvaud S., Wilkins M.R., Appel R.D., Bairoch A. Protein identification and analysis tools on the ExPASy server. The Proteomics Protocols Handbook 2005, 571-607. @ Humana Press. J.M. Walker (Ed.).
19. Biasini M., Bienert S., Waterhouse A., Arnold K., Studer G., Schmidt T., Kiefe F., Cassarino T.G., Bertoni M., Bordoli L., Schwede T. SWISS-MODEL modelling protein tertiary and quaternary structure using evolutionary information. Nucleic Acids Res. 2014, 42:252-258.
20. Stamatakis A., Hoover P., Rougemont J. A rapid bootstrap algorithm for RAxML web-servers. Syst. Biol. 2008, 75(5):758-771.
21. Louie B., Higdon R., Kolker E. A statistical model of protein sequence similarity and function similarity reveals overly-specific function predictions. PLos One 2009, 4(10):7546-7556.
22. Bhuiya M.W., Liu C.J. Engineering monolignol 4-O-methyltransferases to modulate lignin biosynthesis. J. Biol. Chem. 2010, 285(1):277-285.
23. Fernández-Fueyo E., Ruiz-Dueñas F.J., Miki Y., Martínez M.J., Hammel K.E., Martínez A.T. Lignin-degrading peroxidases from the genome of selective ligninolytic fungus Ceriporiopsis subvermispora S. J. Biol. Chem. 2012, 287(20):16903-16916.
24. Heinfling A., Ruiz-Dueñas F.J., Martínez M.J., Bergbauer M., Szewzyk U., Martínez A.T. A study on reducing substrates of manganese-oxidizing peroxidases from Pleurotus eryngii and Bjerkandera adusta. FEBS Lett. 1998, 428(3):141-146.
25. Heining A., Bergbauer M., Szewzyk U. Biodegradation of azo and phthalocyanine dyes by Trametes versicolor and Bjerkandera adusta. Appl. Microbiol. Biotechnol. 1997, 48:261-266.
26. Harper D.B., Mcroberts W.C., Kennedy J.T. Comparison of efficacies of chloromethane: methionine, and S-adenosylmethionine as methyl precursors in biosynthesis of veratryl alcohol and related compounds in Phanerochaete chrysoporium. Appl. Environ. Microbiol. 1996, 62(9):3366-3370.
27. Yong L., Yan L., Wang Y., Zhou S., Fu J.Z., hang J. Biodegradation of phenolic compounds from coking wastewater by immobilized white rot fungus Phanerochaete chrysosporium. J. Hazard. Mater. 2009, 165:1091-1097.
28. Buswell J.A., Eriksson K.E.L. Effect of lignin-related phenols and their methylated derivatives on the growth of eight white-rot fungi. World J. Microbiol. Biotechnol. 1994, 10:169-174.