메뉴 건너뛰기




Volumn 10, Issue 10, 2015, Pages 1625-1642

Directed evolution of artificial enzymes (XNAzymes) from diverse repertoires of synthetic genetic polymers

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; DNA POLYMERASE; ENDONUCLEASE; LIGASE; OLIGONUCLEOTIDE; POLYMER; SYNTHETIC GENETIC POLYMER; UNCLASSIFIED DRUG; ENZYME;

EID: 84942520548     PISSN: 17542189     EISSN: 17502799     Source Type: Journal    
DOI: 10.1038/nprot.2015.104     Document Type: Article
Times cited : (39)

References (34)
  • 1
    • 84865286097 scopus 로고    scopus 로고
    • The XNA world: Progress towards replication and evolution of synthetic genetic polymers
    • Pinheiro, V. B. & Holliger, P. The XNA world: progress towards replication and evolution of synthetic genetic polymers. Curr. Opin. Chem. Biol. 16, 245-252 (2012).
    • (2012) Curr. Opin. Chem. Biol. , vol.16 , pp. 245-252
    • Pinheiro, V.B.1    Holliger, P.2
  • 2
    • 84860013215 scopus 로고    scopus 로고
    • Synthetic genetic polymers capable of heredity and evolution
    • Pinheiro, V. B. et al. Synthetic genetic polymers capable of heredity and evolution. Science 336, 341-344 (2012).
    • (2012) Science , vol.336 , pp. 341-344
    • Pinheiro, V.B.1
  • 4
    • 84925481613 scopus 로고    scopus 로고
    • Catalysts from synthetic genetic polymers
    • Taylor, A. I. et al. Catalysts from synthetic genetic polymers. Nature 518, 427-430 (2015).
    • (2015) Nature , vol.518 , pp. 427-430
    • Taylor, A.I.1
  • 5
    • 28544448500 scopus 로고    scopus 로고
    • Vitro selection, characterization, and application of deoxyribozymes that cleave RNA
    • Silverman, S. K. In vitro selection, characterization, and application of deoxyribozymes that cleave RNA. Nucleic Acids Res. 33, 6151-6163 (2005).
    • (2005) Nucleic Acids Res. , vol.33 , pp. 6151-6163
    • Silverman, S.K.1
  • 7
    • 77950212223 scopus 로고    scopus 로고
    • Expanding the chemistry of DNA for in vitro selection
    • Vaught, J. D. et al. Expanding the chemistry of DNA for in vitro selection. J. Am. Chem. Soc. 132, 4141-4151 (2010).
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 4141-4151
    • Vaught, J.D.1
  • 8
    • 0028641549 scopus 로고
    • Modified RNA sequence pools for in vitro selection
    • Lin, Y., Qiu, Q., Gill, S. C. & Jayasena, S. D. Modified RNA sequence pools for in vitro selection. Nucleic Acids Res. 22, 5229-5234 (1994).
    • (1994) Nucleic Acids Res. , vol.22 , pp. 5229-5234
    • Lin, Y.1    Qiu, Q.2    Gill, S.C.3    Jayasena, S.D.4
  • 9
    • 84875987824 scopus 로고    scopus 로고
    • Toward the combinatorial selection of chemically modified DNAzyme RNase A mimics active against all-RNA substrates
    • Hollenstein, M., Hipolito, C. J., Lam, C. H. & Perrin, D. M. Toward the combinatorial selection of chemically modified DNAzyme RNase A mimics active against all-RNA substrates. ACS Comb. Sci. 15, 174-182 (2013).
    • (2013) ACS Comb. Sci. , vol.15 , pp. 174-182
    • Hollenstein, M.1    Hipolito, C.J.2    Lam, C.H.3    Perrin, D.M.4
  • 10
    • 84919808110 scopus 로고    scopus 로고
    • A method for selecting modified DNAzymes without the use of modified DNA as a template in PCR
    • Renders, M., Miller, E., Hollenstein, M. & Perrin, D. A method for selecting modified DNAzymes without the use of modified DNA as a template in PCR. Chem. Commun. 51, 1360-1362 (2015).
    • (2015) Chem. Commun. , vol.51 , pp. 1360-1362
    • Renders, M.1    Miller, E.2    Hollenstein, M.3    Perrin, D.4
  • 11
    • 84856389509 scopus 로고    scopus 로고
    • RNA-based therapeutics: Current progress and future prospects
    • Burnett, J. C. & Rossi, J. J. RNA-based therapeutics: current progress and future prospects. Chem. Biol. 19, 60-71 (2012).
    • (2012) Chem. Biol. , vol.19 , pp. 60-71
    • Burnett, J.C.1    Rossi, J.J.2
  • 12
    • 84965094228 scopus 로고    scopus 로고
    • Towards applications of synthetic genetic polymers in diagnosis and therapy
    • Taylor, A. I., Arangundy-Franklin, S. & Holliger, P. Towards applications of synthetic genetic polymers in diagnosis and therapy. Curr. Opin. Chem. Biol. 22, 79-84 (2014).
    • (2014) Curr. Opin. Chem. Biol. , vol.22 , pp. 79-84
    • Taylor, A.I.1    Arangundy-Franklin, S.2    Holliger, P.3
  • 13
    • 0030898510 scopus 로고    scopus 로고
    • A general purpose RNA-cleaving DNA enzyme
    • Santoro, S. W. & Joyce, G. F. A general purpose RNA-cleaving DNA enzyme. Proc. Natl. Acad. Sci. USA 94, 4262-4266 (1997).
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 4262-4266
    • Santoro, S.W.1    Joyce, G.F.2
  • 14
    • 0033589752 scopus 로고    scopus 로고
    • Inhibition of bcr-abl oncogene expression by novel deoxyribozymes (DNAzymes)
    • Wu, Y. et al. Inhibition of bcr-abl oncogene expression by novel deoxyribozymes (DNAzymes). Hum. Gene Ther. 10, 2847-2857 (1999).
    • (1999) Hum. Gene Ther. , vol.10 , pp. 2847-2857
    • Wu, Y.1
  • 15
    • 0032486203 scopus 로고    scopus 로고
    • Ribozyme-mediated repair of sickle -globin mRNAs in erythrocyte precursors
    • Lan, N., Howrey, R. P., Lee, S. W., Smith, C. A. & Sullenger, B. A. Ribozyme-mediated repair of sickle -globin mRNAs in erythrocyte precursors. Science 280, 1593-1596 (1998).
    • (1998) Science , vol.280 , pp. 1593-1596
    • Lan, N.1    Howrey, R.P.2    Lee, S.W.3    Smith, C.A.4    Sullenger, B.A.5
  • 16
    • 84909580167 scopus 로고    scopus 로고
    • The expanding view of RNA and DNA function
    • Breaker, R. R. & Joyce, G. F. The expanding view of RNA and DNA function. Chem. Biol. 21, 1059-1065 (2014).
    • (2014) Chem. Biol. , vol.21 , pp. 1059-1065
    • Breaker, R.R.1    Joyce, G.F.2
  • 17
    • 67650103200 scopus 로고    scopus 로고
    • Toward safe genetically modified organisms through the chemical diversification of nucleic acids
    • Herdewijn, P. & Marliere, P. Toward safe genetically modified organisms through the chemical diversification of nucleic acids. Chem. Biodivers. 6, 791-808 (2009).
    • (2009) Chem. Biodivers , vol.6 , pp. 791-808
    • Herdewijn, P.1    Marliere, P.2
  • 18
    • 77950372750 scopus 로고    scopus 로고
    • Xenobiology: A new form of life as the ultimate biosafety tool
    • Schmidt, M. Xenobiology: a new form of life as the ultimate biosafety tool. Bioessays 32, 322-331 (2010).
    • (2010) Bioessays , vol.32 , pp. 322-331
    • Schmidt, M.1
  • 20
    • 84872185418 scopus 로고    scopus 로고
    • Solid-phase chemical synthesis of 5-triphosphate DNA, RNA, and chemically modified oligonucleotides
    • Zlatev, I., Manoharan, M., Vasseur, J.-J. & Morvan, F. Solid-phase chemical synthesis of 5-triphosphate DNA, RNA, and chemically modified oligonucleotides. Curr. Protoc. Nucleic Acid Chem. 50, 1. 28. 1-1. 28. 16 (2012).
    • (2012) Curr. Protoc. Nucleic Acid Chem. , vol.50 , pp. 1281-12816
    • Zlatev, I.1    Manoharan, M.2    Vasseur, J.-J.3    Morvan, F.4
  • 21
    • 77955233988 scopus 로고    scopus 로고
    • Synergistic effects between analogs of DNA and RNA improve the potency of siRNA-mediated gene silencing
    • Deleavey, G. F. et al. Synergistic effects between analogs of DNA and RNA improve the potency of siRNA-mediated gene silencing. Nucleic Acids Res. 38, 4547-4557 (2010).
    • (2010) Nucleic Acids Res. , vol.38 , pp. 4547-4557
    • Deleavey, G.F.1
  • 22
    • 0021111261 scopus 로고
    • Derivatization of unprotected polynucleotides
    • Chu, B. C., Wahl, G. M. & Orgel, L. E. Derivatization of unprotected polynucleotides. Nucleic Acids Res. 11, 6513-6529 (1983).
    • (1983) Nucleic Acids Res. , vol.11 , pp. 6513-6529
    • Chu, B.C.1    Wahl, G.M.2    Orgel, L.E.3
  • 23
    • 0028675028 scopus 로고
    • A DNA enzyme that cleaves RNA
    • Breaker, R. R. & Joyce, G. F. A DNA enzyme that cleaves RNA. Chem. Biol. 1, 223-229 (1994).
    • (1994) Chem. Biol. , vol.1 , pp. 223-229
    • Breaker, R.R.1    Joyce, G.F.2
  • 24
    • 0028983570 scopus 로고
    • A DNA enzyme with Mg2+-dependent RNA phosphoesterase activity
    • Breaker, R. R. & Joyce, G. F. A DNA enzyme with Mg2+-dependent RNA phosphoesterase activity. Chem. Biol. 2, 655-660 (1995).
    • (1995) Chem. Biol. , vol.2 , pp. 655-660
    • Breaker, R.R.1    Joyce, G.F.2
  • 25
    • 79955783956 scopus 로고    scopus 로고
    • A robust, simple genotyping-by-sequencing (GBS) approach for high-diversity species
    • Elshire, R. J., Glaubitz, J. C., Sun, Q. & Poland, J. A. A robust, simple genotyping-by-sequencing (GBS) approach for high-diversity species. PLoS ONE 6, e19379 (2011).
    • (2011) PLoS ONE , vol.6 , pp. e19379
    • Elshire, R.J.1    Glaubitz, J.C.2    Sun, Q.3    Poland, J.A.4
  • 26
    • 0842309823 scopus 로고    scopus 로고
    • Sodium boric acid: A tris-free, cooler conductive medium for DNA electrophoresis
    • Brody, J. R. & Kern, S. E. Sodium boric acid: a tris-free, cooler conductive medium for DNA electrophoresis. Biotechniques 36, 214-216 (2004).
    • (2004) Biotechniques , vol.36 , pp. 214-216
    • Brody, J.R.1    Kern, S.E.2
  • 27
    • 84916899064 scopus 로고    scopus 로고
    • By-product formation in repetitive PCR amplification of DNA libraries during SELEX
    • Tolle, F., Wilke, J., Wengel, J. & Mayer, G. By-product formation in repetitive PCR amplification of DNA libraries during SELEX. PLoS ONE 9, e114693 (2014).
    • (2014) PLoS ONE , vol.9 , pp. e114693
    • Tolle, F.1    Wilke, J.2    Wengel, J.3    Mayer, G.4
  • 28
    • 80052822737 scopus 로고    scopus 로고
    • Emulsion PCR: A high efficient way of PCR amplification of random DNA libraries in aptamer selection
    • Shao, K. et al. Emulsion PCR: a high efficient way of PCR amplification of random DNA libraries in aptamer selection. PLoS ONE 6, e24910 (2011).
    • (2011) PLoS ONE , vol.6 , pp. e24910
    • Shao, K.1
  • 29
    • 84896691914 scopus 로고    scopus 로고
    • Prospective identification of parasitic sequences in phage display screens
    • Matochko, W. L., Cory Li, S., Tang, S. K. Y. & Derda, R. Prospective identification of parasitic sequences in phage display screens. Nucleic Acids Res. 42, 1784-1798 (2014).
    • (2014) Nucleic Acids Res. , vol.42 , pp. 1784-1798
    • Matochko, W.L.1    Cory Li, S.2    Tang, S.K.Y.3    Derda, R.4
  • 30
    • 77955801615 scopus 로고    scopus 로고
    • A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
    • Galaxy Team Galaxy
    • Goecks, J., Nekrutenko, A., Taylor, J. & Galaxy Team Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol. 11, R86 (2010).
    • (2010) Genome Biol , vol.11 , pp. R86
    • Goecks, J.1    Nekrutenko, A.2    Taylor, J.3
  • 31
    • 75949108066 scopus 로고    scopus 로고
    • Galaxy: A web-based genome analysis tool for experimentalists
    • Blankenberg, D. et al. Galaxy: a web-based genome analysis tool for experimentalists. Curr. Protoc. Mol. Biol. 89, 19. 10. 1 19. 10. 21 (2010).
    • (2010) Curr. Protoc. Mol. Biol. , vol.89 , pp. 19101-191021
    • Blankenberg, D.1
  • 32
    • 25844449770 scopus 로고    scopus 로고
    • Galaxy: A platform for interactive large-scale genome analysis
    • Giardine, B. et al. Galaxy: a platform for interactive large-scale genome analysis. Genome Res. 15, 1451-1455 (2005).
    • (2005) Genome Res. , vol.15 , pp. 1451-1455
    • Giardine, B.1
  • 33
    • 84942106089 scopus 로고    scopus 로고
    • FASTAptamer: A bioinformatic toolkit for high-throughput sequence analysis of combinatorial selections
    • Alam, K. K., Chang, J. L. & Burke, D. H. FASTAptamer: a bioinformatic toolkit for high-throughput sequence analysis of combinatorial selections. Mol. Ther. Nucleic Acids 4, e230 (2015).
    • (2015) Mol. Ther. Nucleic Acids , vol.4 , pp. e230
    • Alam, K.K.1    Chang, J.L.2    Burke, D.H.3
  • 34
    • 84928137595 scopus 로고    scopus 로고
    • Selection of LNA-containing DNA aptamers against recombinant human CD73
    • Elle, I. C. et al. Selection of LNA-containing DNA aptamers against recombinant human CD73. Mol. Biosyst. 11, 1260-1270 (2015).
    • (2015) Mol. Biosyst. , vol.11 , pp. 1260-1270
    • Elle, I.C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.