Isolation and characterization of l-tryptophan ammonia lyase from rubrivivax benzoatilyticus strain ja2

Current Protein and Peptide Science

Volumn 16, Issue 8, 2015, Pages 775-781

  Kumavath, Ranjith N ^a   Ramana, Ch V ^b   Sasikala, Ch ^c   Barh, Debmalya ^d   Kumar, Alan Prem ^e,f,g,h   Azevedo, Vasco ⁱ  

^a CENTRAL UNIVERSITY OF KERALA   (India)

^b UNIVERSITY OF HYDERABAD   (India)

^c JAWAHARLAL NEHRU TECHNOLOGICAL UNIVERSITY   (India)

^d Institute of Integrative Omics and Applied Biotechnology (IIOAB)   (India)

^e NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

^f NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

^g CURTIN UNIVERSITY   (Australia)

^h UNIVERSITY OF NORTH TEXAS   (United States)

ⁱ FEDERAL UNIVERSITY OF MINAS GERAIS   (Brazil)

Author keywords

Indole 3 acrylic acid; L tryptophan; L tryptophan ammonia lyase; Rubrivivax benzoatilyticus JA2

Indexed keywords

TRYPTOPHAN; AMMONIA LYASE;

ANION EXCHANGE CHROMATOGRAPHY; ARTICLE; CENTRIFUGATION; ENZYME ANALYSIS; GEL FILTRATION CHROMATOGRAPHY; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; KINETICS; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MOLECULAR WEIGHT; AMINO ACID SEQUENCE; BETAPROTEOBACTERIA; CHEMISTRY; ENZYMOLOGY; ION EXCHANGE CHROMATOGRAPHY; ISOLATION AND PURIFICATION; MASS SPECTROMETRY; METABOLISM; MOLECULAR GENETICS; PEPTIDE MAPPING; SIZE EXCLUSION CHROMATOGRAPHY;

AMINO ACID SEQUENCE; AMMONIA-LYASES; BETAPROTEOBACTERIA; CHROMATOGRAPHY, GEL; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; CHROMATOGRAPHY, ION EXCHANGE; MOLECULAR SEQUENCE DATA; PEPTIDE MAPPING; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TRYPTOPHAN;

EID: 84942115302     PISSN: 13892037     EISSN: 18755550     Source Type: Journal    
DOI: 10.2174/1389203716666150505235929     Document Type: Article

References (26)

1. Camm, E.L.; Towers, G.H.N. Phenylalanine ammonia lyase. Phytochemistry, 1973, 12(5), 961-973.
2. MacDonald, M.J.; D'Cunha, G.B. A modern view of phenylalanine ammonia lyase. Biochem. Cell Biol., 2007, 85(3), 273-282.
3. Kyndt, J.A.; Meyer, T.E.; Cusanovich, M.A.; Van Beeumen, J.J. Characterization of a bacterial tyrosine ammonia lyase, a biosynthetic enzyme for the photoactive yellow protein. FEBS Lett., 2002, 512(1-3), 240-244.
4. Schwede, T.F.; Retey, J.; Schulz, G.E. Crystal structure of histidine ammonia-lyase revealing a novel polypeptide modification as the catalytic electrophile. Biochemistry, 1999, 38(17), 5355-5361.
5. Kim, S.H.; Kronstad, J.W.; Ellis, B.E. Induction of phenylalanine ammonia-lyase activity by tryptophan in Ustilago maydis. Phytochemistry, 2001, 58(6), 849-857.
6. Rosler, J.; Krekel, F.; Amrhein, N.; Schmid, J. Maize phenylalanine ammonia lyase has tyrosine ammonia lyase activity. Plant Physiol., 1997, 113, 175-179.
7. Hsieh, L.S.; Yeh, C.S.; Pan, H.C.; Cheng, C.Y.; Yang, C.C.; Lee, P.D. Cloning and expression of a phenylalanine ammonia-lyase gene (BoPAL2) from Bambusa oldhamii in Escherichia coli and Pichia pastoris. Protein Expr. Purif., 2010, 71(2), 224-230.
8. Xue, Z.; McCluskey, M.; Cantera, K.; Sariaslani, F.S.; Huang, L. Identification, characterization and functional expression of a tyrosine ammonia-lyase and its mutants from the photosynthetic bacterium Rhodobacter sphaeroides. J. Ind. Microbiol. Biotechnol., 2007, 34(9), 599-604.
9. Acker, M.G.; Auld, D.S. Considerations for the design and reporting of enzyme assays in high-throughput screening applications. Perspect. Sci., 2014, 1-6, 56-73.
10. Mohammed, M.; Isukapatla, A.; Mekala, L.P.; Eedara Veera Venkata, R.P.; Chintalapati, S.; Chintalapati, V.R. Genome sequence of the phototrophic betaproteobacterium Rubrivivax benzoatilyticus strain JA2T. J. Bacteriol., 2011, 193(11), 2898-2899.
11. Biebl, H.; Pfennig, N. Isolation of members of the family Rhodospirillaceae. In: The Prokaryotes (Starr MP et al. Eds.), 1981; pp. 167-273, Springer, New York.
12. Zuther, K.; Mayser, P.; Hettwer, U.; Wu, W.; Spiteller, P.; Kindler, B.L.; Karlovsky, P.; Basse, C.W.; Schirawski, J. The tryptophan aminotransferase Tam1 catalyses the single biosynthetic step for tryptophan-dependent pigment synthesis in Ustilago maydis. Mol. Microbiol., 2008, 68(1), 152-172.
13. Snell, E.E. Tryptophanase: Structure, catalytic activities and mechanism of action. Adv. Enzymol. Relat. Areas Mol. Biol., 1975, 42, 287-333.
14. Ranjith, N.K.; Ramana, Ch.V.; Sasikala, Ch. Purification and characterization of 3,4-dihydroxyphenylalanine oxidative deaminase from Rhodobacter sphaeroides OU5. Can. J. Microbiol., 2008, 54 (10), 829-834.
15. Porath, J.; Flodin, P. Gel filtration: A method for desalting and group separation. Nature, 1959, 183(4676), 1657-1659.
16. Himmelhoch, S.R. Chromatography of proteins on ion-exchange adsorbents. Meth. Enzymol., 1971, 22, 273-286.
17. Andrews, P. Estimation of the molecular weights of proteins by Sephadex gel-filtration. Biochem. J., 1964, 91(2), 222-233.
18. Laemmli, U.K. Cleavage of structural proteins during assembly of the head of bacteriophase T4. Nature, 1970, 227, 680-685.
19. Wang, X.; Li, X.; Li, Y. A modified Coomassie Brilliant Blue staining method at nanogram sensitivity compatible with proteomic analysis. Biotechnol. Lett., 2007, 29(10), 1599-1603.
20. Covian, R.; Chess, D.; Balaban, R.S. Continuous monitoring of enzymatic activity within native electrophoresis gels: application to mitochondrial oxidative phosphorylation complexes. Anal. Biochem., 2012, 431(1), 30-39.
21. Abbott, S.L.; O'Connor, J.; Robin, T.; Zimmer, B.L.; Janda, J.M. Biochemical properties of a newly described Escherichia species, Escherichia albertii. J. Clin. Microbiol., 2003, 41(10), 4852-4854.
22. Zakomirdina, L.N.; Kulikova, V.V.; Gogoleva, O.I.; Dementieva, I.S.; Faleev, N.G.; Demidkina, T.V. Tryptophan indole-lyase from Proteus vulgaris: kinetic and spectral properties. Biochemistry (Mosc)., 2002, 67(10), 1189-1196.
23. Koga, J.; Syono, K.; Ichikawa, T.; Adachi, T. Involvement of Ltryptophan aminotransferase in indole-3-acetic acid biosynthesis in Enterobacter cloacae. Biochim Biophys Acta, 1994, 1209(2), 241-247.
24. Nakurte, I.; Keisa, A.; Rostoks, N. Development and Validation of a Reversed-Phase Liquid Chromatography Method for the Simultaneous Determination of Indole-3-Acetic Acid, Indole-3-Pyruvic Acid, and Abscisic Acid in Barley (Hordeum vulgare L.). J. Anal. Methods Chem., 2012, 2012, 103575.
25. Burns, R.O.; Demoss, R.D. Properties of tryptophanase from Escherichia coli. Biochim Biophys Acta, 1962, 65, 233-244.
26. Xiang, L.; Moore, B.S. Inactivation, complementation, and heterologous expression of encP, a novel bacterial phenylalanine ammonia-lyase gene. J. Biol. Chem., 2002, 277(36), 32505-32509.