메뉴 건너뛰기




Volumn 62, Issue 4, 2015, Pages 503-509

Analysis of the performance of the CHESHIRE and YAPP methods at CASD-NMR round 3

Author keywords

Chemical shifts; NMR spectroscopy; NOESY spectra; Protein structure determination

Indexed keywords

HYDROGEN; PROTEIN;

EID: 84941993242     PISSN: 09252738     EISSN: 15735001     Source Type: Journal    
DOI: 10.1007/s10858-015-9940-9     Document Type: Article
Times cited : (5)

References (13)
  • 1
    • 34547455182 scopus 로고    scopus 로고
    • Protein structure determination from NMR chemical shifts
    • 2007PNAS.104.9615C
    • Cavalli A et al (2007) Protein structure determination from NMR chemical shifts. Proc Natl Acad Sci USA 104(23):9615-9620
    • (2007) Proc Natl Acad Sci USA , vol.104 , Issue.23 , pp. 9615-9620
    • Cavalli, A.1
  • 2
    • 79960909252 scopus 로고    scopus 로고
    • Using chemical shifts to determine structural changes in proteins upon complex formation
    • Cavalli A, Montalvao RW, Vendruscolo M (2011) Using chemical shifts to determine structural changes in proteins upon complex formation. J Phys Chem B 115(30):9491-9494
    • (2011) J Phys Chem B , vol.115 , Issue.30 , pp. 9491-9494
    • Cavalli, A.1    Montalvao, R.W.2    Vendruscolo, M.3
  • 3
    • 84899415888 scopus 로고    scopus 로고
    • ALMOST: An all atom molecular simulation toolkit for protein structure determination
    • Fu B et al (2014) ALMOST: an all atom molecular simulation toolkit for protein structure determination. J Comput Chem 35(14):1101-1105
    • (2014) J Comput Chem , vol.35 , Issue.14 , pp. 1101-1105
    • Fu, B.1
  • 4
    • 0031576336 scopus 로고    scopus 로고
    • Torsion angle dynamics for NMR structure calculation with the new program DYANA
    • Guntert P, Mumenthaler C, Wuthrich K (1997) Torsion angle dynamics for NMR structure calculation with the new program DYANA. J Mol Biol 273(1):283-298
    • (1997) J Mol Biol , vol.273 , Issue.1 , pp. 283-298
    • Guntert, P.1    Mumenthaler, C.2    Wuthrich, K.3
  • 5
    • 4644223325 scopus 로고    scopus 로고
    • NOE assignment with ARIA 2.0: The nuts and bolts. Meth
    • Habeck M et al (2004) NOE assignment with ARIA 2.0: the nuts and bolts. Meth. Mol Biol 278:379-402
    • (2004) Mol Biol , vol.278 , pp. 379-402
    • Habeck, M.1
  • 6
    • 0036308102 scopus 로고    scopus 로고
    • Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA
    • Herrmann T, Guntert P, Wuthrich K (2002) Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA. J Mol Biol 319(1):209-227
    • (2002) J Mol Biol , vol.319 , Issue.1 , pp. 209-227
    • Herrmann, T.1    Guntert, P.2    Wuthrich, K.3
  • 7
    • 0000040038 scopus 로고
    • A fast recursive algorithm for molecular-dynamics simulation
    • 0777.65038 1993JCoPh.106.258J
    • Jain A, Vaidehi N, Rodriguez G (1993) A fast recursive algorithm for molecular-dynamics simulation. J Comput Phys 106(2):258-268
    • (1993) J Comput Phys , vol.106 , Issue.2 , pp. 258-268
    • Jain, A.1    Vaidehi, N.2    Rodriguez, G.3
  • 8
    • 84995046262 scopus 로고
    • A large-scale experiment to assess protein structure prediction methods
    • Moult J, et al (1995) A large-scale experiment to assess protein structure prediction methods. Proteins 23(3):ii-v
    • (1995) Proteins , vol.23 , Issue.3 , pp. ii-v
    • Moult, J.1
  • 9
    • 69549138143 scopus 로고    scopus 로고
    • CASD-NMR: Critical assessment of automated structure determination by NMR
    • Rosato A et al (2009) CASD-NMR: critical assessment of automated structure determination by NMR. Nat Methods 6(9):625-626
    • (2009) Nat Methods , vol.6 , Issue.9 , pp. 625-626
    • Rosato, A.1
  • 10
    • 84863011912 scopus 로고    scopus 로고
    • Blind testing of routine, fully automated determination of protein structures from NMR data
    • Rosato A et al (2012) Blind testing of routine, fully automated determination of protein structures from NMR data. Structure 20(2):227-236
    • (2012) Structure , vol.20 , Issue.2 , pp. 227-236
    • Rosato, A.1
  • 11
    • 68349093958 scopus 로고    scopus 로고
    • TALOS+: A hybrid method for predicting protein backbone torsion angles from NMR chemical shifts
    • Shen Y et al (2009) TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts. J Biomol NMR 44(4):213-223
    • (2009) J Biomol NMR , vol.44 , Issue.4 , pp. 213-223
    • Shen, Y.1
  • 12
    • 0033670439 scopus 로고    scopus 로고
    • MaxSub: An automated measure for the assessment of protein structure prediction quality
    • Siew N et al (2000) MaxSub: an automated measure for the assessment of protein structure prediction quality. Bioinformatics 16(9):776-785
    • (2000) Bioinformatics , vol.16 , Issue.9 , pp. 776-785
    • Siew, N.1
  • 13
    • 84904049400 scopus 로고    scopus 로고
    • Robust and highly accurate automatic NOESY assignment and structure determination with Rosetta
    • Zhang Z et al (2014) Robust and highly accurate automatic NOESY assignment and structure determination with Rosetta. J Biomol NMR 59(3):135-145
    • (2014) J Biomol NMR , vol.59 , Issue.3 , pp. 135-145
    • Zhang, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.