A novel gemycircularvirus from experimental rats

Virus Genes

Volumn 51, Issue 2, 2015, Pages 302-305

  Li, Wang ^a   Gu, Yu ^b   Shen, Quan ^a   Yang, Shixing ^a   Wang, Xiaochun ^a   Wan, Yan ^a   Zhang, Wen ^a  

^a JIANGSU UNIVERSITY   (China)

^b HEBEI MEDICAL UNIVERSITY   (China)

Author keywords

Complete genome; Gemycircularvirus; Phylogenetic analysis

Indexed keywords

CAPSID PROTEIN; REPLICATION ASSOCIATED PROTEIN; UNCLASSIFIED DRUG; VIRUS PROTEIN; VIRUS RNA;

AMINO ACID SEQUENCE; ARTICLE; BLOOD SAMPLING; CONTROLLED STUDY; DNA VIRUS; EXPERIMENTAL RAT; GEMYCIRCULARVIRUS; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RAT; SEQUENCE HOMOLOGY; VIRUS GENOME; VIRUS STRAIN; ANIMAL; BLOOD; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; EXPERIMENTAL ANIMAL; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; PHYLOGENY; VIROLOGY; VIRUS FORMS;

ANIMALS; ANIMALS, LABORATORY; BLOOD; CLUSTER ANALYSIS; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; RATS; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; VIRAL PROTEINS; VIRUSES, UNCLASSIFIED;

EID: 84941992656     PISSN: 09208569     EISSN: 1572994X     Source Type: Journal    
DOI: 10.1007/s11262-015-1238-1     Document Type: Article

References (18)

1. K. Rosario, A. Dayaram, M. Marinov, J. Ware, S. Kraberger, D. Stainton, M. Breitbart, A. Varsani, Diverse circular ssDNA viruses discovered in dragonflies (Odonata: Epiprocta). J. Gen. Virol. 93, 2668–2681 (2012)
2. X. Yu, B. Li, Y. Fu, D. Jiang, S.A. Ghabrial, G. Li, Y. Peng, J. Xie, J. Cheng, J. Huang, X. Yi, A geminivirus-related DNA mycovirus that confers hypovirulence to a plant pathogenic fungus. Proc. Natl. Acad. Sci. USA 107, 8387–8392 (2010)
3. A. Sikorski, M. Massaro, S. Kraberger, L.M. Young, D. Smalley, D.P. Martin, A. Varsani, Novel myco-like DNA viruses discovered in the faecal matter of various animals. Virus Res. 177, 209–216 (2013)
4. J.M.A. Van den Brand, M. van Leeuwen, C.M. Schapendonk, J.H. Simon, B.L. Haagmans, A.D.M.E. Osterhaus, S.L. Smits, Metagenomic analysis of the viral flora of pine marten and European badger feces. J. Virol. 86, 2360–2365 (2012)
5. A. Dayaram, K.A. Potter, R. Pailes, M. Marinov, D.D. Rosenstein, A. Varsani, Identification of diverse circular single-stranded DNA viruses in adult dragonflies and damselflies (Insecta: Odonata) of Arizona and Oklahoma, USA. Infect. Genet. Evol. 30, 278–287 (2015)
6. S. Kraberger, G.R. Argüello-Astorga, L.G. Greenfield, C. Galilee, D. Law, D.P. Martin, A. Varsani, Characterisation of a diverse range of circular replication-associated protein encoding DNA viruses recovered from a sewage treatment oxidation pond. Infect. Genet. Evol. 31, 73–86 (2015)
7. A. Dayaram, A. Opong, A. Jäschke, J. Hadfield, M. Baschiera, R.C.J. Dobson, S.K. Offei, D.N. Shepherd, D.P. Martin, A. Varsani, Molecular characterisation of a novel cassava associated circular ssDNA virus. Virus Res. 166, 130–135 (2012)
8. Z. Du, Y. Tang, S. Zhang, X. She, G. Lan, A. Varsani, Z. He, Identification and molecular characterization of a single-stranded circular DNA virus with similarities to Sclerotinia sclerotiorum hypovirulence-associated DNA virus 1. Arch. Virol. 159, 1527–1531 (2014)
9. S. Kraberger, K. Farkas, P. Bernardo, C. Booker, G.R. Argüello-Astorga, F. Mesléard, D.P. Martin, P. Roumagnac, A. Varsani, Identification of novel Bromus- and Trifolium-associated circular DNA viruses. Arch. Virol. 160, 1303–1311 (2015)
10. I. Lamberto, K. Gunst, H. Müller, H. Zur Hausen, E.-M. de Villiers, Mycovirus-like DNA virus sequences from cattle serum and human brain and serum samples from multiple sclerosis patients. Genome Announc. (2014). doi:10.1128/genomeA.00848-14
11. T.G. Phan, D. Mori, X. Deng, S. Rajindrajith, U. Ranawaka, T.F. Fan Ng, F. Bucardo-Rivera, P. Orlandi, K. Ahmed, E. Delwart, Small circular single stranded DNA viral genomes in unexplained cases of human encephalitis, diarrhea, and in untreated sewage. Virology 482, 98–104 (2015)
12. K. Tamura, D. Peterson, N. Peterson, G. Stecher, M. Nei, S. Kumar, MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28, 2731–2739 (2011)
13. P. Zawar-Reza, G.R. Argüello-Astorga, S. Kraberger, L. Julian, D. Stainton, P.A. Broady, A. Varsani, Diverse small circular single-stranded DNA viruses identified in a freshwater pond on the McMurdo Ice Shelf (Antarctica). Infect. Genet. Evol. 26, 132–138 (2014)
14. E. Delwart, L. Li, Rapidly expanding genetic diversity and host range of the Circoviridae viral family and other Rep encoding small circular ssDNA genomes. Virus Res. 164, 114–121 (2012)
15. L. Li, T. Shan, O.B. Soji, M.M. Alam, T.H. Kunz, S.Z. Zaidi, E. Delwart, Possible cross-species transmission of circoviruses and cycloviruses among farm animals. J. Gen. Virol. 92, 768–772 (2011)
16. G. Loconsole, P. Saldarelli, H. Doddapaneni, V. Savino, G.P. Martelli, M. Saponari, Identification of a single-stranded DNA virus associated with citrus chlorotic dwarf disease, a new member in the family Geminiviridae. Virology 432, 162–172 (2012)
17. A. Sikorski, J. Kearvell, S. Elkington, A. Dayaram, G.R. Argüello-Astorga, A. Varsani, Novel ssDNA viruses discovered in yellow-crowned parakeet (Cyanoramphus auriceps) nesting material. Arch. Virol. 158, 1603–1607 (2013)
18. T.F.F. Ng, D.L. Willner, Y.W. Lim, R. Schmieder, B. Chau, C. Nilsson, S. Anthony, Y. Ruan, F. Rohwer, M. Breitbart, Broad surveys of DNA viral diversity obtained through viral metagenomics of mosquitoes. PLoS One 6, e20579 (2011)