RAMPART: A workflow management system for de novo genome assembly

Bioinformatics

Volumn 31, Issue 11, 2015, Pages 1824-1826

  Mapleson, Daniel ^a   Drou, Nizar ^a   Swarbreck, David ^a  

^a EARLHAM INSTITUTE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER PROGRAM; GENOME; GENOMICS; PROCEDURES; WORKFLOW;

GENOME; GENOMICS; SOFTWARE; WORKFLOW;

EID: 84941636708     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btv056     Document Type: Conference Paper

References (5)

1. Abbas, M. M. et al. (2014) Assessment of de novo assemblers for draft genomes: A case study with fungal genomes. BMC Genomics, 15(Suppl 9), S10.
2. Gnerre, S. et al. (2011) High-quality draft assemblies of mammalian genomes from massively parallel sequence data. Proc. Natl Acad. Sci. , 108, 1513-1518.
3. Koren, S. et al. (2014) Automated ensemble assembly and validation of microbial genomes. BMC Bioinformatics, 15, 126.
4. Seemann, T. (2014) Prokka: rapid prokaryotic genome annotation. Bioinformatics, 30, 2068-2069.
5. Tritt, A. et al. (2012) An integrated pipeline for de novo assembly of microbial genomes. PLoS One, 7, e42304.