메뉴 건너뛰기




Volumn 117, Issue , 2015, Pages 87-99

Phenotypic characterization and complementation analysis of Bacillus subtilis 6S RNA single and double deletion mutants

Author keywords

6S 1 RNA; 6S 2 RNA; Bacillus subtilis PY79; Deletion strains; Non coding RNA

Indexed keywords

ALKALINITY; ARTICLE; BACILLUS SUBTILIS; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM MUTANT; DELETION MUTANT; ESCHERICHIA COLI; GEL ELECTROPHORESIS; GENETIC COMPLEMENTATION; NONHUMAN; OPTICAL DENSITY; PHENOTYPE; PROTEIN EXPRESSION; STRESS; TWO DIMENSIONAL ELECTROPHORESIS; CHEMICAL STRUCTURE; CHEMISTRY; CONFORMATION; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; MASS SPECTROMETRY; METABOLISM; MOLECULAR GENETICS; MUTATION; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; PH; PROCEDURES; PROTEOMICS; TEMPERATURE; TWO DIMENSIONAL GEL ELECTROPHORESIS;

EID: 84941416125     PISSN: 03009084     EISSN: 61831638     Source Type: Journal    
DOI: 10.1016/j.biochi.2014.12.019     Document Type: Article
Times cited : (23)

References (43)
  • 1
    • 0037154430 scopus 로고    scopus 로고
    • Expression of a small RNA, BS203 RNA, from the yocI-yocJ intergenic region of Bacillus subtilis genome
    • Y. Ando, S. Asari, S. Suzuma, K. Yamane, and K. Nakamura Expression of a small RNA, BS203 RNA, from the yocI-yocJ intergenic region of Bacillus subtilis genome FEMS Microbiol. Lett. 207 2002 29 33 10.1016/S0378-1097(01)00551-1
    • (2002) FEMS Microbiol. Lett. , vol.207 , pp. 29-33
    • Ando, Y.1    Asari, S.2    Suzuma, S.3    Yamane, K.4    Nakamura, K.5
  • 2
    • 17844379221 scopus 로고    scopus 로고
    • 6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter
    • J.E. Barrick, N. Sudarsan, Z. Weinberg, W.L. Ruzzo, and R.R. Breaker 6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter RNA 11 2005 774 784 10.1261/rna.7286705
    • (2005) RNA , vol.11 , pp. 774-784
    • Barrick, J.E.1    Sudarsan, N.2    Weinberg, Z.3    Ruzzo, W.L.4    Breaker, R.R.5
  • 3
    • 84859423675 scopus 로고    scopus 로고
    • In vivo and in vitro analysis of 6S RNA-templated short transcripts in Bacillus subtilis
    • B.M. Beckmann, O.Y. Burenina, P.G. Hoch, E.A. Kubareva, C.M. Sharma, and R.K. Hartmann In vivo and in vitro analysis of 6S RNA-templated short transcripts in Bacillus subtilis RNA Biol. 8 2011 839 849 10.4161/rna.8.5.16151
    • (2011) RNA Biol. , vol.8 , pp. 839-849
    • Beckmann, B.M.1    Burenina, O.Y.2    Hoch, P.G.3    Kubareva, E.A.4    Sharma, C.M.5    Hartmann, R.K.6
  • 5
    • 33645108507 scopus 로고    scopus 로고
    • Adaptation of Bacillus subtilis to growth at low temperature: A combined transcriptomic and proteomic appraisal
    • I. Budde, L. Steil, C. Scharf, U. Völker, and E. Bremer Adaptation of Bacillus subtilis to growth at low temperature: a combined transcriptomic and proteomic appraisal Microbiology 152 2006 831 853 10.1099/mic.0.28530-0
    • (2006) Microbiology , vol.152 , pp. 831-853
    • Budde, I.1    Steil, L.2    Scharf, C.3    Völker, U.4    Bremer, E.5
  • 7
    • 84883470700 scopus 로고    scopus 로고
    • Initiating nucleotide identity determines efficiency of RNA synthesis from 6S RNA templates in Bacillus subtilis but not Escherichia coli
    • I.J. Cabrera-Ostertag, A.T. Cavanagh, and K.M. Wassarman Initiating nucleotide identity determines efficiency of RNA synthesis from 6S RNA templates in Bacillus subtilis but not Escherichia coli Nucleic Acids Res. 41 2013 7501 7511 10.1093/nar/gkt517
    • (2013) Nucleic Acids Res. , vol.41 , pp. 7501-7511
    • Cabrera-Ostertag, I.J.1    Cavanagh, A.T.2    Wassarman, K.M.3
  • 9
    • 84876191061 scopus 로고    scopus 로고
    • 6S-1 RNA function leads to a delay in sporulation in Bacillus subtilis
    • A.T. Cavanagh, and K.M. Wassarman 6S-1 RNA function leads to a delay in sporulation in Bacillus subtilis J. Bacteriol. 195 2013 2079 2086 10.1128/JB.00050-13
    • (2013) J. Bacteriol. , vol.195 , pp. 2079-2086
    • Cavanagh, A.T.1    Wassarman, K.M.2
  • 10
    • 84907029678 scopus 로고    scopus 로고
    • 6S RNA, a global regulator of transcription in Escherichia coli, Bacillus subtilis, and beyond
    • A.T. Cavanagh, and K.M. Wassarman 6S RNA, a global regulator of transcription in Escherichia coli, Bacillus subtilis, and beyond Annu. Rev. Microbiol. 68 2014 45 60 10.1146/annurev-micro-092611-150135
    • (2014) Annu. Rev. Microbiol. , vol.68 , pp. 45-60
    • Cavanagh, A.T.1    Wassarman, K.M.2
  • 12
    • 84858379381 scopus 로고    scopus 로고
    • Regulation of 6S RNA by pRNA synthesis is required for efficient recovery from stationary phase in E. Coli and B. Subtilis
    • A.T. Cavanagh, J.M. Sperger, and K.M. Wassarman Regulation of 6S RNA by pRNA synthesis is required for efficient recovery from stationary phase in E. coli and B. subtilis Nucleic Acids Res. 40 2012 2234 2246 10.1093/nar/gkr1003
    • (2012) Nucleic Acids Res. , vol.40 , pp. 2234-2246
    • Cavanagh, A.T.1    Sperger, J.M.2    Wassarman, K.M.3
  • 13
    • 29144490206 scopus 로고    scopus 로고
    • P-Ser-HPr - A link between carbon metabolism and the virulence of some pathogenic bacteria
    • J. Deutscher, R. Herro, A. Bourand, I. Mijakovic, and S. Poncet P-Ser-HPr - a link between carbon metabolism and the virulence of some pathogenic bacteria Biochim. Biophys. Acta 1754 2005 118 125 10.1016/j.bbapap.2005.07.029
    • (2005) Biochim. Biophys. Acta , vol.1754 , pp. 118-125
    • Deutscher, J.1    Herro, R.2    Bourand, A.3    Mijakovic, I.4    Poncet, S.5
  • 14
    • 84870798421 scopus 로고    scopus 로고
    • Small regulatory RNA in Legionella pneumophila
    • S.P. Faucher, and H.A. Shuman Small regulatory RNA in Legionella pneumophila Front. Microbiol. 2 2011 98 10.3389/fmicb.2011.00098
    • (2011) Front. Microbiol. , vol.2 , pp. 98
    • Faucher, S.P.1    Shuman, H.A.2
  • 16
    • 65249173472 scopus 로고    scopus 로고
    • Carbon catabolite control of the metabolic network in Bacillus subtilis
    • Y. Fujita Carbon catabolite control of the metabolic network in Bacillus subtilis Biosci. Biotechnol. Biochem. 73 2009 245 259 10.1271/bbb.80479
    • (2009) Biosci. Biotechnol. Biochem. , vol.73 , pp. 245-259
    • Fujita, Y.1
  • 17
    • 0029590029 scopus 로고
    • Antibiotic-resistance cassettes for Bacillus subtilis
    • A.M. Guérout-Fleury Antibiotic-resistance cassettes for Bacillus subtilis Gene 167 1995 335 336 10.1016/0378-1119(95)00652-4
    • (1995) Gene , vol.167 , pp. 335-336
    • Guérout-Fleury, A.M.1
  • 18
    • 33745923792 scopus 로고    scopus 로고
    • Regulation of LiaRS-dependent gene expression in Bacillus subtilis: Identification of inhibitor proteins, regulator binding sites, and target genes of a conserved cell envelope stress-sensing two-component system
    • S. Jordan, A. Junker, J.D. Helmann, and T. Mascher Regulation of LiaRS-dependent gene expression in Bacillus subtilis: identification of inhibitor proteins, regulator binding sites, and target genes of a conserved cell envelope stress-sensing two-component system J. Bacteriol. 188 2006 5153 5166 10.1128/JB.00310-06
    • (2006) J. Bacteriol. , vol.188 , pp. 5153-5166
    • Jordan, S.1    Junker, A.2    Helmann, J.D.3    Mascher, T.4
  • 19
    • 37349034233 scopus 로고    scopus 로고
    • Cell envelope stress response in Gram-positive bacteria
    • S. Jordan, M.I. Hutchings, and T. Mascher Cell envelope stress response in Gram-positive bacteria FEMS Microbiol. Rev. 32 2008 107 146 10.1111/j.1574-6976.2007.00091.x
    • (2008) FEMS Microbiol. Rev. , vol.32 , pp. 107-146
    • Jordan, S.1    Hutchings, M.I.2    Mascher, T.3
  • 20
    • 0030855599 scopus 로고    scopus 로고
    • Autogenous control of PspF, a constitutively active enhancer-binding protein of Escherichia coli
    • G. Jovanovic, J. Dworkin, and P. Model Autogenous control of PspF, a constitutively active enhancer-binding protein of Escherichia coli J. Bacteriol. 179 1997 5232 5237
    • (1997) J. Bacteriol. , vol.179 , pp. 5232-5237
    • Jovanovic, G.1    Dworkin, J.2    Model, P.3
  • 21
    • 33746361219 scopus 로고    scopus 로고
    • Induction and function of the phage shock protein extracytoplasmic stress response in Escherichia coli
    • G. Jovanovic, L.J. Lloyd, M.P.H. Stumpf, A.J. Mayhew, and M. Buck Induction and function of the phage shock protein extracytoplasmic stress response in Escherichia coli J. Biol. Chem. 281 2006 21147 21161 10.1074/jbc.M602323200
    • (2006) J. Biol. Chem. , vol.281 , pp. 21147-21161
    • Jovanovic, G.1    Lloyd, L.J.2    Stumpf, M.P.H.3    Mayhew, A.J.4    Buck, M.5
  • 22
    • 0026760151 scopus 로고
    • The spollN279(ts) mutation affects the FtsA protein of Bacillus subtilis
    • C. Karmazyn-Campelli, L. Fluss, T. Leighton, and P. Straigier The spollN279(ts) mutation affects the FtsA protein of Bacillus subtilis Biochimie 74 1992 689 694 10.1016/0300-9084(92)90141-Z
    • (1992) Biochimie , vol.74 , pp. 689-694
    • Karmazyn-Campelli, C.1    Fluss, L.2    Leighton, T.3    Straigier, P.4
  • 23
    • 11344264898 scopus 로고    scopus 로고
    • Regulation of 6S RNA biogenesis by switching utilization of both sigma factors and endoribonucleases
    • K.S. Kim, and Y. Lee Regulation of 6S RNA biogenesis by switching utilization of both sigma factors and endoribonucleases Nucleic Acids Res. 32 2004 6057 6068 10.1093/nar/gkh939
    • (2004) Nucleic Acids Res. , vol.32 , pp. 6057-6068
    • Kim, K.S.1    Lee, Y.2
  • 24
    • 84887051977 scopus 로고    scopus 로고
    • x regulons to the lantibiotic resistome of Bacillus subtilis
    • X regulons to the lantibiotic resistome of Bacillus subtilis Mol. Microbiol. 90 2013 502 518 10.1111/mmi.12380
    • (2013) Mol. Microbiol. , vol.90 , pp. 502-518
    • Kingston, A.W.1    Liao, X.2    Helmann, J.D.3
  • 25
    • 0026530785 scopus 로고
    • Analysis of genes involved in biosynthesis of the lantibiotic subtilin
    • C. Klein, C. Kaletta, N. Schnell, and K.D. Entian Analysis of genes involved in biosynthesis of the lantibiotic subtilin Appl. Environ. Microbiol. 58 1992 132 142
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 132-142
    • Klein, C.1    Kaletta, C.2    Schnell, N.3    Entian, K.D.4
  • 26
    • 0021798253 scopus 로고
    • Buffering capacity of bacilli that grow at different pH ranges
    • T.A. Krulwich, R. Agus, M. Schneier, and A.A. Guffanti Buffering capacity of bacilli that grow at different pH ranges J. Bacteriol. 162 1985 768 772
    • (1985) J. Bacteriol. , vol.162 , pp. 768-772
    • Krulwich, T.A.1    Agus, R.2    Schneier, M.3    Guffanti, A.A.4
  • 27
    • 11244353225 scopus 로고    scopus 로고
    • Identification of a new member of the phage shock protein response in Escherichia coli, the phage shock protein G (PspG)
    • L.J. Lloyd, S.E. Jones, G. Jovanovic, P. Gyaneshwar, M.D. Rolfe, A. Thompson, J.C. Hinton, and M. Buck Identification of a new member of the phage shock protein response in Escherichia coli, the phage shock protein G (PspG) J. Biol. Chem. 279 2004 55707 55714 10.1074/jbc.M408994200
    • (2004) J. Biol. Chem. , vol.279 , pp. 55707-55714
    • Lloyd, L.J.1    Jones, S.E.2    Jovanovic, G.3    Gyaneshwar, P.4    Rolfe, M.D.5    Thompson, A.6    Hinton, J.C.7    Buck, M.8
  • 28
    • 0034859439 scopus 로고    scopus 로고
    • Specific polar localization of ribosomes in Bacillus subtilis depends on active transcription
    • J. Mascarenhas, M.H.W. Weber, and P.L. Graumann Specific polar localization of ribosomes in Bacillus subtilis depends on active transcription EMBO Rep. 2 2001 685 689 10.1093/embo-reports/kve160
    • (2001) EMBO Rep. , vol.2 , pp. 685-689
    • Mascarenhas, J.1    Weber, M.H.W.2    Graumann, P.L.3
  • 29
    • 40149091702 scopus 로고    scopus 로고
    • Studies on the expression of 6S RNA from E. Coli: Involvement of regulators important for stress and growth adaption
    • T. Neusser, N. Gildehaus, R. Wurm, and R. Wagner Studies on the expression of 6S RNA from E. coli: involvement of regulators important for stress and growth adaption Biol. Chem. 389 2008 285 297 10.1515/BC.2008.023
    • (2008) Biol. Chem. , vol.389 , pp. 285-297
    • Neusser, T.1    Gildehaus, N.2    Wurm, R.3    Wagner, R.4
  • 30
    • 77949481723 scopus 로고    scopus 로고
    • Depletion of the non-coding regulatory 6S RNA in E. Coli causes a surprising reduction in the expression of the translation machinery
    • epub
    • T. Neusser, T. Polen, R. Geissen, and R. Wagner Depletion of the non-coding regulatory 6S RNA in E. coli causes a surprising reduction in the expression of the translation machinery BMC Genomics 11 2010 165 10.1186/1471-2164-11-165 epub
    • (2010) BMC Genomics , vol.11 , pp. 165
    • Neusser, T.1    Polen, T.2    Geissen, R.3    Wagner, R.4
  • 32
    • 65349111880 scopus 로고    scopus 로고
    • Impact of rRNA methylations on ribosome recycling and fidelity of initiation in Escherichia coli
    • A. Seshadri, B. Dubey, M.H.W. Weber, and U. Varshney Impact of rRNA methylations on ribosome recycling and fidelity of initiation in Escherichia coli Mol. Microbiol. 72 2009 795 808 10.1111/j.1365-2958.2009.06685.x
    • (2009) Mol. Microbiol. , vol.72 , pp. 795-808
    • Seshadri, A.1    Dubey, B.2    Weber, M.H.W.3    Varshney, U.4
  • 33
    • 84906322998 scopus 로고    scopus 로고
    • Regulation of transcription by 6S RNAs: Insights from the Escherichia coli and Bacillus subtilis model systems
    • B. Steuten, P.G. Hoch, K. Damm, S. Schneider, K. Köhler, R. Wagner, and R.K. Hartmann Regulation of transcription by 6S RNAs: insights from the Escherichia coli and Bacillus subtilis model systems RNA Biol. 11 2014 508 521 10.4161/rna.28827
    • (2014) RNA Biol. , vol.11 , pp. 508-521
    • Steuten, B.1    Hoch, P.G.2    Damm, K.3    Schneider, S.4    Köhler, K.5    Wagner, R.6    Hartmann, R.K.7
  • 34
    • 0036667443 scopus 로고    scopus 로고
    • Identification and characterization of novel small RNAs in the aspS-yrvM intergenic region of the Bacillus subtilis genome
    • S. Suzuma, S. Asari, K. Bunai, K. Yoshino, Y. Ando, H. Kakeshita, M. Fujita, K. Nakamura, and K. Yamane Identification and characterization of novel small RNAs in the aspS-yrvM intergenic region of the Bacillus subtilis genome Microbiology 148 2002 2591 2598
    • (2002) Microbiology , vol.148 , pp. 2591-2598
    • Suzuma, S.1    Asari, S.2    Bunai, K.3    Yoshino, K.4    Ando, Y.5    Kakeshita, H.6    Fujita, M.7    Nakamura, K.8    Yamane, K.9
  • 35
    • 18344371528 scopus 로고    scopus 로고
    • A highly conserved 6S RNA structure is required for regulation of transcription
    • A.E. Trotochaud, and K.M. Wassarman A highly conserved 6S RNA structure is required for regulation of transcription Nat. Struct. Mol. Biol. 12 2005 313 319 10.1038/nsmb917
    • (2005) Nat. Struct. Mol. Biol. , vol.12 , pp. 313-319
    • Trotochaud, A.E.1    Wassarman, K.M.2
  • 36
    • 33744774173 scopus 로고    scopus 로고
    • 6S RNA regulation of pspF transcription leads to altered cell survival at high pH
    • A.E. Trotochaud, and K.M. Wassarman 6S RNA regulation of pspF transcription leads to altered cell survival at high pH J. Bacteriol. 188 2006 3936 3943 10.1128/JB.00079-06
    • (2006) J. Bacteriol. , vol.188 , pp. 3936-3943
    • Trotochaud, A.E.1    Wassarman, K.M.2
  • 37
    • 0034625237 scopus 로고    scopus 로고
    • 6S RNA regulates E. Coli RNA polymerase activity
    • K.M. Wassarman, and G. Storz 6S RNA regulates E. coli RNA polymerase activity Cell 101 2000 613 623 10.1016/S0092-8674(00)80873-9
    • (2000) Cell , vol.101 , pp. 613-623
    • Wassarman, K.M.1    Storz, G.2
  • 38
    • 84946205526 scopus 로고    scopus 로고
    • Dissemination of 6S RNA among Bacteria
    • (Epub ahead of print)
    • S. Wehner, K. Damm, R.K. Hartmann, and M. Marz Dissemination of 6S RNA among Bacteria RNA Biol. 31 2014 10.4161/rna.29894 (Epub ahead of print)
    • (2014) RNA Biol. , vol.31
    • Wehner, S.1    Damm, K.2    Hartmann, R.K.3    Marz, M.4
  • 42
    • 0021204113 scopus 로고
    • Construction of a cloning site near one end of Tn917 into which foreign DNA may be inserted without affecting transposition in Bacillus subtilis or expression of the transposon-borne erm gene
    • P. Youngman, J.B. Perkins, and R. Losick Construction of a cloning site near one end of Tn917 into which foreign DNA may be inserted without affecting transposition in Bacillus subtilis or expression of the transposon-borne erm gene Plasmid 12 1984 1 9 10.1016/0147-619X(84)90061-1
    • (1984) Plasmid , vol.12 , pp. 1-9
    • Youngman, P.1    Perkins, J.B.2    Losick, R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.