-
1
-
-
34748841030
-
Protein kinase inhibitors for the treatment of disease: the promise and the problems
-
L.C. Pinna, Springer-Verlag Berlin
-
P. Cohen Protein kinase inhibitors for the treatment of disease: the promise and the problems L.C. Pinna, Handbook of Experimental Pharmacology Vol. 167 2005 Springer-Verlag Berlin 1 7
-
(2005)
Handbook of Experimental Pharmacology
, vol.167
, pp. 1-7
-
-
Cohen, P.1
-
2
-
-
0033517739
-
Catalytic mechanism of phosphorylase kinase probed by mutational studies
-
V.T. Skamnaki, D.J. Owen, M.E.M. Noble, E.D. Lowe, G. Lowe, N.G. Oikonomakos, and et al. Catalytic mechanism of phosphorylase kinase probed by mutational studies Biochem. -US 38 1999 14718 14730
-
(1999)
Biochem. -US
, vol.38
, pp. 14718-14730
-
-
Skamnaki, V.T.1
Owen, D.J.2
Noble, M.E.M.3
Lowe, E.D.4
Lowe, G.5
Oikonomakos, N.G.6
-
3
-
-
0028352914
-
Elevated phosphorylase-kinase activity in psoriatic epidermis - correlation with increased phosphorylation and psoriatic activity
-
M.C.Y. Heng, M.K. Song, and M.K. Heng Elevated phosphorylase-kinase activity in psoriatic epidermis - correlation with increased phosphorylation and psoriatic activity Br. J. Dermatol. 130 1994 298 306
-
(1994)
Br. J. Dermatol.
, vol.130
, pp. 298-306
-
-
Heng, M.C.Y.1
Song, M.K.2
Heng, M.K.3
-
4
-
-
0033748814
-
Drug-induced suppression of phosphorylase kinase activity correlates with resolution of psoriasis as assessed by clinical, histological and immunohistochemical parameters
-
M.C.Y. Heng, M.K. Song, J. Harker, and M.K. Heng Drug-induced suppression of phosphorylase kinase activity correlates with resolution of psoriasis as assessed by clinical, histological and immunohistochemical parameters Br. J. Dermatol. 143 2000 937 949
-
(2000)
Br. J. Dermatol.
, vol.143
, pp. 937-949
-
-
Heng, M.C.Y.1
Song, M.K.2
Harker, J.3
Heng, M.K.4
-
5
-
-
79551492697
-
Kinetics, in silico docking, molecular dynamics, and MM-GBSA binding studies on prototype indirubins, KT5720, and staurosporine as phosphorylase kinase ATP-binding site inhibitors: the role of water molecules examined
-
J.M. Hayes, V.T. Skamnaki, G. Archontis, C. Lamprakis, J. Sarrou, N. Bischler, and et al. Kinetics, in silico docking, molecular dynamics, and MM-GBSA binding studies on prototype indirubins, KT5720, and staurosporine as phosphorylase kinase ATP-binding site inhibitors: the role of water molecules examined Proteins 79 2011 703 719
-
(2011)
Proteins
, vol.79
, pp. 703-719
-
-
Hayes, J.M.1
Skamnaki, V.T.2
Archontis, G.3
Lamprakis, C.4
Sarrou, J.5
Bischler, N.6
-
6
-
-
84867044870
-
Identification of phosphorylase kinase as a novel therapeutic target through high-throughput screening for anti-angiogenesis compounds in zebrafish
-
S. Camus, C. Quevedo, S. Menendez, I. Paramonov, P.F.W. Stouten, R.A.J. Janssen, and et al. Identification of phosphorylase kinase as a novel therapeutic target through high-throughput screening for anti-angiogenesis compounds in zebrafish Oncogene 31 2012 4333 4342
-
(2012)
Oncogene
, vol.31
, pp. 4333-4342
-
-
Camus, S.1
Quevedo, C.2
Menendez, S.3
Paramonov, I.4
Stouten, P.F.W.5
Janssen, R.A.J.6
-
7
-
-
58149181483
-
The structure of phosphorylase kinase holoenzyme at 9:9 angstrom resolution and location of the catalytic subunit and the substrate glycogen phosphorylase
-
C. Venien-Bryan, S. Jonic, V. Skamnaki, N. Brown, N. Bischler, N.G. Oikonomakos, and et al. The structure of phosphorylase kinase holoenzyme at 9:9 angstrom resolution and location of the catalytic subunit and the substrate glycogen phosphorylase Structure 17 2009 117 127
-
(2009)
Structure
, vol.17
, pp. 117-127
-
-
Venien-Bryan, C.1
Jonic, S.2
Skamnaki, V.3
Brown, N.4
Bischler, N.5
Oikonomakos, N.G.6
-
8
-
-
0028918780
-
Expression, purification and crystallization of phosphorylase-kinase catalytic domain
-
D.J. Owen, A.C. Papageorgiou, E.F. Garman, M.E.M. Noble, and L.N. Johnson Expression, purification and crystallization of phosphorylase-kinase catalytic domain J. Mol. Biol. 246 1995 374 381
-
(1995)
J. Mol. Biol.
, vol.246
, pp. 374-381
-
-
Owen, D.J.1
Papageorgiou, A.C.2
Garman, E.F.3
Noble, M.E.M.4
Johnson, L.N.5
-
9
-
-
0029644732
-
2 Structures of the catalytic domain of phosphorylase-kinase - an active protein-kinase complexed with substrate-analog and product
-
D.J. Owen, M.E.M. Noble, E.F. Garman, A.C. Papageorgiou, and L.N. Johnson 2 Structures of the catalytic domain of phosphorylase-kinase - an active protein-kinase complexed with substrate-analog and product Structure 3 1995 467 482
-
(1995)
Structure
, vol.3
, pp. 467-482
-
-
Owen, D.J.1
Noble, M.E.M.2
Garman, E.F.3
Papageorgiou, A.C.4
Johnson, L.N.5
-
10
-
-
0030812650
-
The crystal structure of a phosphorylase kinase peptide substrate complex: kinase substrate recognition
-
E.D. Lowe, M.E.M. Noble, V.T. Skamnaki, N.G. Oikonomakos, D.J. Owen, and L.N. Johnson The crystal structure of a phosphorylase kinase peptide substrate complex: kinase substrate recognition EMBO J. 16 1997 6646 6658
-
(1997)
EMBO J.
, vol.16
, pp. 6646-6658
-
-
Lowe, E.D.1
Noble, M.E.M.2
Skamnaki, V.T.3
Oikonomakos, N.G.4
Owen, D.J.5
Johnson, L.N.6
-
12
-
-
36549040859
-
The selectivity of protein kinase inhibitors: a further update
-
J. Bain, L. Plater, M. Elliott, N. Shpiro, C.J. Hastie, H. Mclauchlan, and et al. The selectivity of protein kinase inhibitors: a further update Biochem. J. 408 2007 297 315
-
(2007)
Biochem. J.
, vol.408
, pp. 297-315
-
-
Bain, J.1
Plater, L.2
Elliott, M.3
Shpiro, N.4
Hastie, C.J.5
Mclauchlan, H.6
-
13
-
-
1642323740
-
Protein kinase inhibitors: insights into drug design from structure
-
M.E.M. Noble, J.A. Endicott, and L.N. Johnson Protein kinase inhibitors: insights into drug design from structure Science 303 2004 1800 1805
-
(2004)
Science
, vol.303
, pp. 1800-1805
-
-
Noble, M.E.M.1
Endicott, J.A.2
Johnson, L.N.3
-
15
-
-
84867074848
-
From tyrian purple to kinase modulators: naturally halogenated indirubins and synthetic analogues
-
K. Vougogiannopoulou, and A.L. Skaltsounis From tyrian purple to kinase modulators: naturally halogenated indirubins and synthetic analogues Planta Med. 78 2012 1515 1528
-
(2012)
Planta Med.
, vol.78
, pp. 1515-1528
-
-
Vougogiannopoulou, K.1
Skaltsounis, A.L.2
-
16
-
-
0024996417
-
K252a is a potent and selective inhibitor of phosphorylase-kinase
-
L.H. Elliott, S.E. Wilkinson, A.D. Sedgwick, C.H. Hill, G. Lawton, P.D. Davis, and et al. K252a is a potent and selective inhibitor of phosphorylase-kinase Biochem. Biophys. Res. Commun. 171 1990 148 154
-
(1990)
Biochem. Biophys. Res. Commun.
, vol.171
, pp. 148-154
-
-
Elliott, L.H.1
Wilkinson, S.E.2
Sedgwick, A.D.3
Hill, C.H.4
Lawton, G.5
Davis, P.D.6
-
17
-
-
0035808457
-
Indirubins inhibit glycogen synthase kinase-3 beta and CDK5/P25, two protein kinases involved in abnormal tau phosphorylation in Alzheimer's disease - a property common to most cycline-dependent kinase inhibitors
-
S. Leclerc, M. Garnier, R. Hoessel, D. Marko, J.A. Bibb, G.L. Snyder, and et al. Indirubins inhibit glycogen synthase kinase-3 beta and CDK5/P25, two protein kinases involved in abnormal tau phosphorylation in Alzheimer's disease - a property common to most cycline-dependent kinase inhibitors J. Biol. Chem. 276 2001 251 260
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 251-260
-
-
Leclerc, S.1
Garnier, M.2
Hoessel, R.3
Marko, D.4
Bibb, J.A.5
Snyder, G.L.6
-
18
-
-
2442589341
-
Structural basis for the synthesis of indirubins as potent and selective inhibitors of glycogen synthase kinase-3 and cyclin-dependent kinases
-
P. Polychronopoulos, P. Magiatis, A.L. Skaltsounis, V. Myrianthopoulos, E. Mikros, A. Tarricone, and et al. Structural basis for the synthesis of indirubins as potent and selective inhibitors of glycogen synthase kinase-3 and cyclin-dependent kinases J. Med. Chem. 47 2004 935 946
-
(2004)
J. Med. Chem.
, vol.47
, pp. 935-946
-
-
Polychronopoulos, P.1
Magiatis, P.2
Skaltsounis, A.L.3
Myrianthopoulos, V.4
Mikros, E.5
Tarricone, A.6
-
19
-
-
54549104866
-
Soluble 3′,6-substituted indirubins with enhanced selectivity toward glycogen synthase kinase-3 alter circadian period
-
K. Vougogiannopoulou, Y. Ferandin, K. Bettayeb, V. Myrianthopoulos, O. Lozach, Y. Fan, and et al. Soluble 3′,6-substituted indirubins with enhanced selectivity toward glycogen synthase kinase-3 alter circadian period J. Med. Chem. 51 2008 6421 6431
-
(2008)
J. Med. Chem.
, vol.51
, pp. 6421-6431
-
-
Vougogiannopoulou, K.1
Ferandin, Y.2
Bettayeb, K.3
Myrianthopoulos, V.4
Lozach, O.5
Fan, Y.6
-
20
-
-
33746667272
-
7-bromoindirubin-3′-oxime induces caspase-independent cell death
-
J. Ribas, K. Bettayeb, Y. Ferandin, M. Knockaert, X. Garrofe-Ochoa, F. Totzke, and et al. 7-bromoindirubin-3′-oxime induces caspase-independent cell death Oncogene 25 2006 6304 6318
-
(2006)
Oncogene
, vol.25
, pp. 6304-6318
-
-
Ribas, J.1
Bettayeb, K.2
Ferandin, Y.3
Knockaert, M.4
Garrofe-Ochoa, X.5
Totzke, F.6
-
21
-
-
0042894451
-
Tyrian purple:,6′-dibromoindigo and related compounds
-
C.J. Cooksey Tyrian purple:,6′-dibromoindigo and related compounds Molecules 6 2001 736 769
-
(2001)
Molecules
, vol.6
, pp. 736-769
-
-
Cooksey, C.J.1
-
22
-
-
0036332286
-
Indirubin and meisoindigo in the treatment of chronic myelogenous leukemia in China
-
Z.J. Xiao, Y.S. Hao, B.C. Liu, and L.S. Qian Indirubin and meisoindigo in the treatment of chronic myelogenous leukemia in China Leukemia Lymphoma 43 2002 1763 1768
-
(2002)
Leukemia Lymphoma
, vol.43
, pp. 1763-1768
-
-
Xiao, Z.J.1
Hao, Y.S.2
Liu, B.C.3
Qian, L.S.4
-
23
-
-
8644224855
-
Molecular mechanisms of indirubin and its derivatives: novel anticancer molecules with their origin in traditional Chinese phytomedicine
-
G. Eisenbrand, F. Hippe, S. Jakobs, and S. Muehlbeyer Molecular mechanisms of indirubin and its derivatives: novel anticancer molecules with their origin in traditional Chinese phytomedicine J. Cancer Res. Clin. 130 2004 627 635
-
(2004)
J. Cancer Res. Clin.
, vol.130
, pp. 627-635
-
-
Eisenbrand, G.1
Hippe, F.2
Jakobs, S.3
Muehlbeyer, S.4
-
24
-
-
84860380244
-
Indirubin derivative E804 inhibits angiogenesis
-
E.K. Shin, and J.K. Kim Indirubin derivative E804 inhibits angiogenesis BMC Cancer 12 2012
-
(2012)
BMC Cancer
, vol.12
-
-
Shin, E.K.1
Kim, J.K.2
-
25
-
-
0034988970
-
Inhibitor binding to active and inactive CDK2: the crystal structure of CDK2-cyclin A/indirubin-5-sulphonate
-
T.G. Davies, P. Tunnah, L. Meijer, D. Marko, G. Eisenbrand, J.A. Endicott, and et al. Inhibitor binding to active and inactive CDK2: the crystal structure of CDK2-cyclin A/indirubin-5-sulphonate Structure 9 2001 389 397
-
(2001)
Structure
, vol.9
, pp. 389-397
-
-
Davies, T.G.1
Tunnah, P.2
Meijer, L.3
Marko, D.4
Eisenbrand, G.5
Endicott, J.A.6
-
26
-
-
0033128165
-
Indirubin, the active constituent of a Chinese antileukaemia medicine, inhibits cyclin-dependent kinases
-
R. Hoessel, S. Leclerc, J.A. Endicott, M.E.M. Nobel, A. Lawrie, P. Tunnah, and et al. Indirubin, the active constituent of a Chinese antileukaemia medicine, inhibits cyclin-dependent kinases Nat. Cell Biol. 1 1999 60 67
-
(1999)
Nat. Cell Biol.
, vol.1
, pp. 60-67
-
-
Hoessel, R.1
Leclerc, S.2
Endicott, J.A.3
Nobel, M.E.M.4
Lawrie, A.5
Tunnah, P.6
-
27
-
-
13444253813
-
Mechanism of CDK5/p25 binding by CDK inhibitors
-
M. Mapelli, L. Massimiliano, C. Crovace, M.A. Seeliger, L.H. Tsai, L. Meijer, and et al. Mechanism of CDK5/p25 binding by CDK inhibitors J. Med. Chem. 48 2005 671 679
-
(2005)
J. Med. Chem.
, vol.48
, pp. 671-679
-
-
Mapelli, M.1
Massimiliano, L.2
Crovace, C.3
Seeliger, M.A.4
Tsai, L.H.5
Meijer, L.6
-
28
-
-
0242710962
-
Structures of P-falciparum PfPK5 test the CDK regulation paradigm and suggest mechanisms of small molecule inhibition
-
S. Holton, A. Merckx, D. Burgess, C. Doerig, M. Noble, and J. Endicott Structures of P-falciparum PfPK5 test the CDK regulation paradigm and suggest mechanisms of small molecule inhibition Structure 11 2003 1329 1337
-
(2003)
Structure
, vol.11
, pp. 1329-1337
-
-
Holton, S.1
Merckx, A.2
Burgess, D.3
Doerig, C.4
Noble, M.5
Endicott, J.6
-
29
-
-
0141645621
-
Structural characterization of the GSK-3 beta active site using selective and non-selective ATP-mimetic inhibitors
-
J.A. Bertrand, S. Thieffine, A. Vulpetti, C. Cristiani, B. Valsasina, S. Knapp, and et al. Structural characterization of the GSK-3 beta active site using selective and non-selective ATP-mimetic inhibitors J. Mol. Biol. 333 2003 393 407
-
(2003)
J. Mol. Biol.
, vol.333
, pp. 393-407
-
-
Bertrand, J.A.1
Thieffine, S.2
Vulpetti, A.3
Cristiani, C.4
Valsasina, B.5
Knapp, S.6
-
30
-
-
84872355664
-
Novel inverse binding mode of indirubin derivatives yields improved selectivity for DYRK kinases
-
V. Myrianthopoulos, M. Kritsanida, N. Gaboriaud-Kolar, P. Magiatis, Y. Ferandin, E. Durieu, and et al. Novel inverse binding mode of indirubin derivatives yields improved selectivity for DYRK kinases ACS Med. Chem. Lett. 4 2013 22 26
-
(2013)
ACS Med. Chem. Lett.
, vol.4
, pp. 22-26
-
-
Myrianthopoulos, V.1
Kritsanida, M.2
Gaboriaud-Kolar, N.3
Magiatis, P.4
Ferandin, Y.5
Durieu, E.6
-
31
-
-
84941335813
-
-
Schrodinger. LLC, New York, NY, 2014
-
Schrodinger. LLC, New York, NY, 2014.
-
-
-
-
32
-
-
0015912123
-
Subunit structure of rabbit-skeletal-muscle phosphorylase kinase, and molecular basis of its activation reactions
-
P. Cohen Subunit structure of rabbit-skeletal-muscle phosphorylase kinase, and molecular basis of its activation reactions Eur. J. Biochem. 34 1973 1 14
-
(1973)
Eur. J. Biochem.
, vol.34
, pp. 1-14
-
-
Cohen, P.1
-
33
-
-
0036155785
-
Three-dimensional structure of phosphorylase kinase at 22 angstrom resolution and its complex with glycogen phosphorylase b
-
C. Venien-Bryan, E.M. Lowe, N. Boisset, K.W. Traxler, L.N. Johnson, and G.M. Carlson Three-dimensional structure of phosphorylase kinase at 22 angstrom resolution and its complex with glycogen phosphorylase b Structure 10 2002 33 41
-
(2002)
Structure
, vol.10
, pp. 33-41
-
-
Venien-Bryan, C.1
Lowe, E.M.2
Boisset, N.3
Traxler, K.W.4
Johnson, L.N.5
Carlson, G.M.6
-
35
-
-
0014344064
-
Subunit interactions and their relationship to the allosteric properties of rabbit skeletal muscle phosphorylase b
-
L.L. Kastenschmidt, J. Kastenschmidt, and E. Helmreich Subunit interactions and their relationship to the allosteric properties of rabbit skeletal muscle phosphorylase b Biochemistry 7 1968 3590 3608
-
(1968)
Biochemistry
, vol.7
, pp. 3590-3608
-
-
Kastenschmidt, L.L.1
Kastenschmidt, J.2
Helmreich, E.3
-
36
-
-
4544363334
-
Effect of molecular crowding on self-association of phosphorylase kinase and its interaction with phosphorylase b and glycogen
-
N.A. Chebotareva, I.E. Andreeva, V.F. Makeeva, N.B. Livanova, and B.I. Kurganov Effect of molecular crowding on self-association of phosphorylase kinase and its interaction with phosphorylase b and glycogen J. Mol. Recognit. 17 2004 426 432
-
(2004)
J. Mol. Recognit.
, vol.17
, pp. 426-432
-
-
Chebotareva, N.A.1
Andreeva, I.E.2
Makeeva, V.F.3
Livanova, N.B.4
Kurganov, B.I.5
-
37
-
-
0017184389
-
Rapid and sensitive method for quantitation of microgram quantities of protein utilizing principle of protein-dye binding
-
M.M. Bradford Rapid and sensitive method for quantitation of microgram quantities of protein utilizing principle of protein-dye binding Anal. Biochem. 72 1976 248 254
-
(1976)
Anal. Biochem.
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
38
-
-
33746744358
-
3′-Substituted 7-halogenoindirubins, a new class of death inducing agents
-
Y. Ferandin, K. Bettayeb, M. Kritsanida, O. Lozach, P. Polychronopoulos, P. Magiatis, and et al. 3′-Substituted 7-halogenoindirubins, a new class of death inducing agents J. Med. Chem. 49 2006 4638 4649
-
(2006)
J. Med. Chem.
, vol.49
, pp. 4638-4649
-
-
Ferandin, Y.1
Bettayeb, K.2
Kritsanida, M.3
Lozach, O.4
Polychronopoulos, P.5
Magiatis, P.6
-
39
-
-
0025848374
-
An optimized assay of phosphorylase kinase in crude liver preparations
-
K. Uyttenhove, M. Bollen, and W. Stalmans An optimized assay of phosphorylase kinase in crude liver preparations Biochem. J. 278 Pt 3 1991 899 901
-
(1991)
Biochem. J.
, vol.278
, pp. 899-901
-
-
Uyttenhove, K.1
Bollen, M.2
Stalmans, W.3
-
40
-
-
0004166184
-
-
Erithakus Software, Staines, U.K.
-
Leatherburrow, R.J. GraFit. Erithakus Software, Staines, U.K. 1992.
-
(1992)
GraFit
-
-
Leatherburrow, R.J.1
-
41
-
-
0000189651
-
Density-functional thermochemistry: 3. The role of exact exchange
-
A.D. Becke Density-functional thermochemistry: 3. The role of exact exchange J Chem. Phys. 98 1993 5648 5652
-
(1993)
J Chem. Phys.
, vol.98
, pp. 5648-5652
-
-
Becke, A.D.1
-
42
-
-
0345491105
-
Development of the Colle-Salvetti correlation-energy formula into a functional of the electron-density
-
C.T. Lee, W.T. Yang, and R.G. Parr Development of the Colle-Salvetti correlation-energy formula into a functional of the electron-density Phys. Rev. B 37 1988 785 789
-
(1988)
Phys. Rev. B
, vol.37
, pp. 785-789
-
-
Lee, C.T.1
Yang, W.T.2
Parr, R.G.3
-
43
-
-
33751157732
-
Ab-initio calculation of vibrational absorption and circular-dichroism spectra using density-functional force-fields
-
P.J. Stephens, F.J. Devlin, C.F. Chabalowski, and M.J. Frisch Ab-initio calculation of vibrational absorption and circular-dichroism spectra using density-functional force-fields J Phys. Chem. -US. 98 1994 11623 11627
-
(1994)
J Phys. Chem. -US.
, vol.98
, pp. 11623-11627
-
-
Stephens, P.J.1
Devlin, F.J.2
Chabalowski, C.F.3
Frisch, M.J.4
-
44
-
-
84859420868
-
3 '-Axial CH2OH Substitution on glucopyranose does not Increase Glycogen Phosphorylase Inhibitory Potency. QM/MM-PBSA Calculations Suggest Why
-
S. Manta, A. Xipnitou, C. Kiritsis, A.L. Kantsadi, J.M. Hayes, V.T. Skamnaki, and et al. 3 '-Axial CH2OH Substitution on glucopyranose does not Increase Glycogen Phosphorylase Inhibitory Potency. QM/MM-PBSA Calculations Suggest Why Chem. Biol. Drug Des. 79 2012 663 673
-
(2012)
Chem. Biol. Drug Des.
, vol.79
, pp. 663-673
-
-
Manta, S.1
Xipnitou, A.2
Kiritsis, C.3
Kantsadi, A.L.4
Hayes, J.M.5
Skamnaki, V.T.6
-
45
-
-
43049141516
-
The M06 suite of density functionals for main group thermochemistry, thermochemical kinetics, noncovalent interactions, excited states, and transition elements: two new functionals and systematic testing of four M06-class functionals and 12 other functionals
-
Y. Zhao, and D.G. Truhlar The M06 suite of density functionals for main group thermochemistry, thermochemical kinetics, noncovalent interactions, excited states, and transition elements: two new functionals and systematic testing of four M06-class functionals and 12 other functionals Theor. Chem. Acc. 120 2008 215 241
-
(2008)
Theor. Chem. Acc.
, vol.120
, pp. 215-241
-
-
Zhao, Y.1
Truhlar, D.G.2
-
46
-
-
0000188281
-
The MIDI! basis set for quantum mechanical calculations of molecular geometries and partial charges
-
R.E. Easton, D.J. Giesen, A. Welch, C.J. Cramer, and D.G. Truhlar The MIDI! basis set for quantum mechanical calculations of molecular geometries and partial charges Theor. Chim. Acta 93 1996 281 301
-
(1996)
Theor. Chim. Acta
, vol.93
, pp. 281-301
-
-
Easton, R.E.1
Giesen, D.J.2
Welch, A.3
Cramer, C.J.4
Truhlar, D.G.5
-
47
-
-
0032380559
-
MIDI! basis set for silicon, bromine, and iodine
-
J.B. Li, C.J. Cramer, and D.G. Truhlar MIDI! basis set for silicon, bromine, and iodine Theor. Chem. Acc. 99 1998 192 196
-
(1998)
Theor. Chem. Acc.
, vol.99
, pp. 192-196
-
-
Li, J.B.1
Cramer, C.J.2
Truhlar, D.G.3
-
48
-
-
84859181463
-
The s-hole phenomenon of halogen atoms forms the structural basis of the strong inhibitory potency of C5halogen substituted glucopyranosyl nucleosides towards glycogen phosphorylase b
-
A.L. Kantsadi, J.M. Hayes, S. Manta, V.T. Skamnaki, C. Kiritsis, A.M.G. Psarra, and et al. The s-hole phenomenon of halogen atoms forms the structural basis of the strong inhibitory potency of C5halogen substituted glucopyranosyl nucleosides towards glycogen phosphorylase b ChemMedChem 7 2012 722 732
-
(2012)
ChemMedChem
, vol.7
, pp. 722-732
-
-
Kantsadi, A.L.1
Hayes, J.M.2
Manta, S.3
Skamnaki, V.T.4
Kiritsis, C.5
Psarra, A.M.G.6
-
49
-
-
0035913529
-
Evaluation and reparametrization of the OPLS-AA force field for proteins via comparison with accurate quantum chemical calculations on peptides
-
G.A. Kaminski, R.A. Friesner, J. Tirado-Rives, and W.L. Jorgensen Evaluation and reparametrization of the OPLS-AA force field for proteins via comparison with accurate quantum chemical calculations on peptides J. Phys. Chem. B 105 2001 6474 6487
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 6474-6487
-
-
Kaminski, G.A.1
Friesner, R.A.2
Tirado-Rives, J.3
Jorgensen, W.L.4
-
50
-
-
0001664118
-
A mixed quantum mechanics/molecular mechanics (QM/MM) method for large-scale modeling of chemistry in protein environments
-
R.B. Murphy, D.M. Philipp, and R.A. Friesner A mixed quantum mechanics/molecular mechanics (QM/MM) method for large-scale modeling of chemistry in protein environments J. Comput. Chem. 21 2000 1442 1457
-
(2000)
J. Comput. Chem.
, vol.21
, pp. 1442-1457
-
-
Murphy, R.B.1
Philipp, D.M.2
Friesner, R.A.3
-
51
-
-
0030180875
-
New model for calculation of solvation free energies: correction of self-consistent reaction field continuum dielectric theory for short-range hydrogen-bonding effects
-
B. Marten, K. Kim, C. Cortis, R.A. Friesner, R.B. Murphy, M.N. Ringnalda, and et al. New model for calculation of solvation free energies: correction of self-consistent reaction field continuum dielectric theory for short-range hydrogen-bonding effects J. Phys. Chem. -US 100 1996 11775 11788
-
(1996)
J. Phys. Chem. -US
, vol.100
, pp. 11775-11788
-
-
Marten, B.1
Kim, K.2
Cortis, C.3
Friesner, R.A.4
Murphy, R.B.5
Ringnalda, M.N.6
-
52
-
-
34247272948
-
Evaluating virtual screening methods: good and bad metrics for the early recognition problem
-
J.F. Truchon, and C.I. Bayly Evaluating virtual screening methods: good and bad metrics for the early recognition problem J. Chem. Inf. Model. 47 2007 488 508
-
(2007)
J. Chem. Inf. Model.
, vol.47
, pp. 488-508
-
-
Truchon, J.F.1
Bayly, C.I.2
-
53
-
-
68949158347
-
A statistical framework to evaluate virtual screening
-
W. Zhao, K.E. Hevener, S.W. White, R.E. Lee, and J.M. Boyett A statistical framework to evaluate virtual screening BMC Bioinformatics 10 2009
-
(2009)
BMC Bioinformatics
, vol.10
-
-
Zhao, W.1
Hevener, K.E.2
White, S.W.3
Lee, R.E.4
Boyett, J.M.5
-
54
-
-
78650689245
-
Comprehensive comparison of ligand-based virtual screening tools against the DUD data set reveals limitations of current 3D methods
-
V. Venkatraman, V.I. Perez-Nueno, L. Mavridis, and D.W. Ritchie Comprehensive comparison of ligand-based virtual screening tools against the DUD data set reveals limitations of current 3D methods J. Chem. Inf. Model. 50 2010 2079 2093
-
(2010)
J. Chem. Inf. Model.
, vol.50
, pp. 2079-2093
-
-
Venkatraman, V.1
Perez-Nueno, V.I.2
Mavridis, L.3
Ritchie, D.W.4
-
55
-
-
84906939473
-
Structure based inhibitor design targeting glycogen phosphorylase b virtual screening, synthesis, biochemical and biological assessment of novel N-acyl-beta-d-glucopyranosylamines
-
V. Parmenopoulou, A.L. Kantsadi, V.G. Tsirkone, D.S.M. Chatzileontiadou, S. Manta, S.E. Zographos, and et al. Structure based inhibitor design targeting glycogen phosphorylase b virtual screening, synthesis, biochemical and biological assessment of novel N-acyl-beta-d-glucopyranosylamines Bioorg. Med. Chem. 22 2014 4810 4825
-
(2014)
Bioorg. Med. Chem.
, vol.22
, pp. 4810-4825
-
-
Parmenopoulou, V.1
Kantsadi, A.L.2
Tsirkone, V.G.3
Chatzileontiadou, D.S.M.4
Manta, S.5
Zographos, S.E.6
-
57
-
-
0033567657
-
Phosphorylase kinase: the complexity of its regulation is reflected in the complexity of its structure
-
R.J. Brushia, and D.A. Walsh Phosphorylase kinase: the complexity of its regulation is reflected in the complexity of its structure Front. Biosci. J. Virtual Lib. 4 1999 D618 D641
-
(1999)
Front. Biosci. J. Virtual Lib.
, vol.4
, pp. D618-D641
-
-
Brushia, R.J.1
Walsh, D.A.2
-
58
-
-
0026018140
-
The ATPase activity of phosphorylase kinase is regulated in parallel with its protein kinase activity
-
H.K. Paudel, and G.M. Carlson The ATPase activity of phosphorylase kinase is regulated in parallel with its protein kinase activity J. Biol. Chem. 266 1991 16524 16529
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 16524-16529
-
-
Paudel, H.K.1
Carlson, G.M.2
-
59
-
-
0024392482
-
Reaction of fluorescein isothiocyanate with an ATP-binding site on the phosphorylase kinase alpha subunit
-
N. Zaman, M. Varsanyi, L.M.J. Heilmeyer, r, T.G. Sotiroudis, C.M. Johnson, and J.W. Crabb Reaction of fluorescein isothiocyanate with an ATP-binding site on the phosphorylase kinase alpha subunit Eur. J. Biochem. 182 1989 577 584
-
(1989)
Eur. J. Biochem.
, vol.182
, pp. 577-584
-
-
Zaman, N.1
Varsanyi, M.2
Heilmeyer, L.M.J.3
Sotiroudis, R.T.G.4
Johnson, C.M.5
Crabb, J.W.6
-
60
-
-
0023928520
-
Competition between nucleoside diphosphates and triphosphates at the catalytic and allosteric sites of phosphorylase kinase
-
A. Cheng, and G.M. Carlson Competition between nucleoside diphosphates and triphosphates at the catalytic and allosteric sites of phosphorylase kinase J. Biol. Chem. 263 1988 5543 5549
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 5543-5549
-
-
Cheng, A.1
Carlson, G.M.2
-
61
-
-
84934459574
-
The role of different ATP analogs on the catalytic function of phosphorylase kinase
-
N.V. Gulyaeva, P.L. Vulfson, and E.S. Severin The role of different ATP analogs on the catalytic function of phosphorylase kinase Biokhimiya (Moscow) 43 1977 373 381
-
(1977)
Biokhimiya (Moscow)
, vol.43
, pp. 373-381
-
-
Gulyaeva, N.V.1
Vulfson, P.L.2
Severin, E.S.3
-
62
-
-
84941352248
-
-
U.S.A. WO
-
Meijer, L., Bettayeb, K., Skaltsounis, A.L., Maglatis, P., Boix, J., Ribas J. 7-substituted indirubin-3'-oximes and their applications. U.S.A., 2013, Vol. WO2007099402.
-
(2013)
7-substituted indirubin-3'-oximes and their applications
-
-
Meijer, L.1
Bettayeb, K.2
Skaltsounis, A.L.3
Maglatis, P.4
Boix, J.5
Ribas, J.6
-
63
-
-
17144385534
-
Virtual screening workflow development guided by the receiver operating characteristic curve approach. Application to high-throughput docking on metabotropic glutamate receptor subtype 4
-
N. Triballeau, F. Acher, I. Brabet, J.P. Pin, and H.O. Bertrand Virtual screening workflow development guided by the receiver operating characteristic curve approach. Application to high-throughput docking on metabotropic glutamate receptor subtype 4 J. Med. Chem. 48 2005 2534 2547
-
(2005)
J. Med. Chem.
, vol.48
, pp. 2534-2547
-
-
Triballeau, N.1
Acher, F.2
Brabet, I.3
Pin, J.P.4
Bertrand, H.O.5
-
66
-
-
84859583695
-
On extension of the current biomolecular empirical force field for the description of halogen bonds
-
M. Kolar, and P. Hobza On extension of the current biomolecular empirical force field for the description of halogen bonds J. Chem. Theory Comput. 8 2012 1325 1333
-
(2012)
J. Chem. Theory Comput.
, vol.8
, pp. 1325-1333
-
-
Kolar, M.1
Hobza, P.2
-
67
-
-
79959739959
-
Molecular mechanical study of halogen bonding in drug discovery
-
M.A.A. Ibrahim Molecular mechanical study of halogen bonding in drug discovery J. Comput. Chem. 32 2011 2564 2574
-
(2011)
J. Comput. Chem.
, vol.32
, pp. 2564-2574
-
-
Ibrahim, M.A.A.1
-
68
-
-
84870547591
-
Molecular mechanical perspective on halogen bonding
-
M.A.A. Ibrahim Molecular mechanical perspective on halogen bonding J. Mol. Model. 18 2012 4625 4638
-
(2012)
J. Mol. Model.
, vol.18
, pp. 4625-4638
-
-
Ibrahim, M.A.A.1
-
69
-
-
84866682261
-
Treatment of halogen bonding in the OPLS-AA force field: application to potent anti-HIV agents
-
W.L. Jorgensen, and P. Schyman Treatment of halogen bonding in the OPLS-AA force field: application to potent anti-HIV agents J. Chem. Theory Comput. 8 2012 3895 3901
-
(2012)
J. Chem. Theory Comput.
, vol.8
, pp. 3895-3901
-
-
Jorgensen, W.L.1
Schyman, P.2
-
70
-
-
80055066394
-
A QM/MM study of the binding of RAPTA ligands to cathepsin B
-
A. Ciancetta, S. Genheden, and U. Ryde A QM/MM study of the binding of RAPTA ligands to cathepsin B J. Comput. Aided Mol. Des. 25 2011 729 742
-
(2011)
J. Comput. Aided Mol. Des.
, vol.25
, pp. 729-742
-
-
Ciancetta, A.1
Genheden, S.2
Ryde, U.3
-
71
-
-
13444307044
-
Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
-
E. Krissinel, and K. Henrick Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions Acta Crystallogr. D 60 2004 2256 2268
-
(2004)
Acta Crystallogr. D
, vol.60
, pp. 2256-2268
-
-
Krissinel, E.1
Henrick, K.2
-
72
-
-
84888294131
-
Halogen bond tunability II: the varying roles of electrostatic and dispersion contributions to attraction in halogen bonds
-
K.E. Riley, J.S. Murray, J. Fanfrlik, J. Rezac, R.J. Sola, M.C. Concha, and et al. Halogen bond tunability II: the varying roles of electrostatic and dispersion contributions to attraction in halogen bonds J. Mol. Model. 19 2013 4651 4659
-
(2013)
J. Mol. Model.
, vol.19
, pp. 4651-4659
-
-
Riley, K.E.1
Murray, J.S.2
Fanfrlik, J.3
Rezac, J.4
Sola, R.J.5
Concha, M.C.6
-
73
-
-
84887901729
-
Modulation of aldose reductase inhibition by halogen bond tuning
-
J. Fanfrlik, M. Kolar, M. Kamlar, D. Hurny, F.X. Ruiz, A. Cousido-Siah, and et al. Modulation of aldose reductase inhibition by halogen bond tuning ACS Chem. Biol. 8 2013 2484 2492
-
(2013)
ACS Chem. Biol.
, vol.8
, pp. 2484-2492
-
-
Fanfrlik, J.1
Kolar, M.2
Kamlar, M.3
Hurny, D.4
Ruiz, F.X.5
Cousido-Siah, A.6
-
74
-
-
76649086691
-
Alchemical free energy simulations for biological complexes: powerful but temperamental
-
A. Aleksandrov, D. Thompson, and T. Simonson Alchemical free energy simulations for biological complexes: powerful but temperamental J. Mol. Recognit. 23 2010 117 127
-
(2010)
J. Mol. Recognit.
, vol.23
, pp. 117-127
-
-
Aleksandrov, A.1
Thompson, D.2
Simonson, T.3
-
75
-
-
84903713248
-
Free energy calculations to estimate ligand-binding affinities in structure-based drug design
-
M.R. Reddy, C.R. Reddy, R.S. Rathore, M.D. Erion, P. Aparoy, R.N. Reddy, and et al. Free energy calculations to estimate ligand-binding affinities in structure-based drug design Curr. Pharm. Des. 20 2014 3323 3337
-
(2014)
Curr. Pharm. Des.
, vol.20
, pp. 3323-3337
-
-
Reddy, M.R.1
Reddy, C.R.2
Rathore, R.S.3
Erion, M.D.4
Aparoy, P.5
Reddy, R.N.6
|