Epidemiology and genetic characterization of noroviruses among adults in an endemic setting, Peruvian Amazon Basin, 2004-2011

PLoS ONE

Volumn 10, Issue 7, 2015, Pages

  Ballard, Sarah Blythe ^a,b   Reaves, Erik J ^b   Luna, C Giannina ^b   Silva, Maria E ^b   Rocha, Claudio ^b   Heitzinger, Kristen ^b,c   Saito, Mayuko ^d,e   Apaza, Sonia ^e   Espetia, Susan ^e   Blazes, David L ^f   Tilley, Drake H ^b   Aguilar, Rene C Guzmán ^g   Gilman, Robert H ^a,h   Bausch, Daniel G ^b,i  

^a JOHNS HOPKINS BLOOMBERG SCHOOL OF PUBLIC HEALTH   (United States)

^b Peru   (Peru)

^c UNIVERSITY OF WASHINGTON   (United States)

^d TOHOKU UNIVERSITY GRADUATE SCHOOL OF MEDICINE   (Japan)

^e UNIVERSIDAD PERUANA CAYETANO HEREDIA   (Peru)

^f Uniformed Services University of the Health Sciences   (United States)

^g Policlínico Militar de Chorrillos   (Peru)

^h ASOCIACIÓN BENÉFICA PRISMA   (Peru)

ⁱ TULANE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; ARTICLE; BACTERIUM; CASE CONTROL STUDY; COHORT ANALYSIS; COMMUNITY LIVING; CONTROLLED STUDY; DIARRHEA; DISEASE SURVEILLANCE; FECES ANALYSIS; FEMALE; HUMAN; INCIDENCE; MAJOR CLINICAL STUDY; MALE; NONHUMAN; NOROVIRUS; NOROVIRUS INFECTION; PARASITE; RISK ASSESSMENT; SOLDIER; VIRUS GENE; VIRUS IDENTIFICATION; VIRUS TRANSMISSION; ADOLESCENT; ANIMAL; BACTERIAL INFECTIONS; CALICIVIRIDAE INFECTIONS; COINFECTION; COMORBIDITY; ENDEMIC DISEASE; FECES; GENETICS; GENOTYPE; MICROBIOLOGY; NEMATODE INFECTIONS; PARASITOLOGY; PERU; PHYSIOLOGY; PREVALENCE; PROTOZOAN INFECTIONS; STATISTICAL MODEL; STATISTICS AND NUMERICAL DATA; VIROLOGY; YOUNG ADULT;

ADOLESCENT; ADULT; ANIMALS; BACTERIAL INFECTIONS; CALICIVIRIDAE INFECTIONS; CASE-CONTROL STUDIES; COHORT STUDIES; COINFECTION; COMORBIDITY; DIARRHEA; ENDEMIC DISEASES; FECES; GENOTYPE; HUMANS; INCIDENCE; LOGISTIC MODELS; MALE; MILITARY PERSONNEL; NEMATODE INFECTIONS; NOROVIRUS; PERU; PREVALENCE; PROTOZOAN INFECTIONS; YOUNG ADULT;

EID: 84941335936     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0131646     Document Type: Article

References (38)

1. Patel MM, Hall AJ, Vinje J, Parashar UD. Noroviruses: a comprehensive review. Journal of clinical virology: the official publication of the Pan American Society for Clinical Virology. 2009; 44(1):1-8. Epub 2008/12/17. doi: 10.1016/j.jcv.2008.10.009 PMID: 19084472.
2. Atmar RL, Estes MK. The epidemiologic and clinical importance of norovirus infection. Gastroenterology clinics of North America. 2006; 35(2):275-90, viii. Epub 2006/08/02. doi: 10.1016/j.gtc.2006.03. 001 PMID: 16880066.
3. Lopman BA, Reacher MH, Vipond IB, Hill D, Perry C, Halladay T, et al. Epidemiology and cost of nosocomial gastroenteritis, Avon, England, 2002-2003. Emerging infectious diseases. 2004; 10(10):1827-34. Epub 2004/10/27. doi: 10.3201/eid1010.030941 PMID: 15504271; PubMed Central PMCID: PMC3323246.
4. Kaufman SS, Chatterjee NK, Fuschino ME, Morse DL, Morotti RA, Magid MS, et al. Characteristics of human calicivirus enteritis in intestinal transplant recipients. Journal of pediatric gastroenterology and nutrition. 2005; 40(3):328-33. Epub 2005/03/01. PMID: 15735487.
5. Chapman AS, Witkop CT, Escobar JD, Schlorman CA, DeMarcus LS, Marmer LM, et al. Norovirus outbreak associated with person-to-person transmission, U.S. Air Force Academy, July 2011. Msmr. 2011; 18(11):2-5. Epub 2011/12/08. PMID: 22145847.
6. Cramer EH, Gu DX, Durbin RE, Vessel Sanitation Pogram Environmental Health Inspection T. Diarrheal disease on cruise ships, 1990-2000: the impact of environmental health programs. American journal of preventive medicine. 2003; 24(3):227-33. Epub 2003/03/27. PMID: 12657340.
7. Riddle MS, Sherman SS, Kilbane EM, Putnam SD. A multivariate analysis of factors associated with differential disease and nonbattle injury and morbidity aboard ships of the U.S. Naval 5th Fleet during peacetime deployment. Military medicine. 2004; 169(10):787-94. Epub 2004/11/10. PMID: 15532342.
8. Saito M, Goel-Apaza S, Espetia S, Velasquez D, Cabrera L, Loli S, et al. Multiple norovirus infections in a birth cohort in a Peruvian peri-urban community. Clinical infectious diseases: an official publication of the Infectious Diseases Society of America. 2013. Epub 2013/12/05. doi: 10.1093/cid/cit763 PMID: 24300042.
9. Glass RI, Parashar UD, Estes MK. Norovirus gastroenteritis. The New England journal of medicine. 2009; 361(18):1776-85. Epub 2009/10/30. doi: 10.1056/NEJMra0804575 PMID: 19864676.
10. Atmar RL, Bernstein DI, Harro CD, Al-Ibrahim MS, Chen WH, Ferreira J, et al. Norovirus vaccine against experimental human Norwalk Virus illness. The New England journal of medicine. 2011; 365 (23):2178-87. Epub 2011/12/14. doi: 10.1056/NEJMoa1101245 PMID: 22150036; PubMed Central PMCID: PMC3761795.
11. El-Kamary SS, Pasetti MF, Mendelman PM, Frey SE, Bernstein DI, Treanor JJ, et al. Adjuvanted intranasal Norwalk virus-like particle vaccine elicits antibodies and antibody-secreting cells that express homing receptors for mucosal and peripheral lymphoid tissues. The Journal of infectious diseases. 2010; 202(11):1649-58. Epub 2010/10/29. doi: 10.1086/657087 PMID: 20979455; PubMed Central PMCID: PMCPmc3722871.
12. Frey S, Treanor JJ, Atmar RL, Topman D, Chen WH, Ferreira J, et al., editors. Phase 1 dosage escalation, safety and immunogenicity stuy of a bivalent norovirus VLP vaccine by the intramuscular route. 49th Annual Meeting of the Infectious Disease Society of America; 2011 October 20, 2011; Boston, MA.
13. Vesikari T, Lappalainen S, Nurminen K. Development of a combined norovirus-rotavirus vaccine. 6th International Vaccines for Enteric Diseases Conference; September 15, 2011; Cannes, France2011.
14. Apaza S, Espetia S, Gilman RH, Montenegro S, Pineda S, Herhold F, et al. Detection and genogrouping of noroviruses from children's stools by Taqman One-step RT-PCR. Journal of visualized experiments: JoVE. 2012;(65:). Epub 2012/08/18. doi: 10.3791/3232 PMID: 22898754.
15. Kroneman A, Vennema H, Deforche K, vd Avoort H, Penaranda S, Oberste MS, et al. An automated genotyping tool for enteroviruses and noroviruses. Journal of clinical virology: the official publication of the Pan American Society for Clinical Virology. 2011; 51(2):121-5. Epub 2011/04/26. doi: 10.1016/j.jcv. 2011.03.006 PMID: 21514213.
16. Gray LD. Manual of Clinical Microbiology. Washington, D. C.: American Society for Microbiology; 1995.
17. Nachamkin I. Manual of Clinical Microbiology. Washington, D. C.: American Society for Microbiology; 1999.
18. Stacy-Phipps S, Mecca JJ, Weiss JB. Multiplex PCR assay and simple preparation method for stool specimens detect enterotoxigenic Escherichia coli DNA during course of infection. Journal of clinical microbiology. 1995; 33(5):1054-9. Epub 1995/05/01. PMID: 7615704; PubMed Central PMCID: PMC228103.
19. Hugh R. Manual of Clinical Microbiology. Bethesda, MD1970.
20. Centers for Disease Control and Prevention. Isolation of Vibrio cholerae from fecal specimens. [cited July 18, 2013]. In: Laboratory Methods for the Diagnosis of Vibrio cholerae [Internet]. [cited July 18, 2013]; [16-26]. Available: http://www.cdc.gov/cholera/pdf/laboratory-methods-for-the-diagnosis-ofvibrio-cholerae-chapter-4.pdf.
21. Ritchie LS. An ether sedimentation technique for routine stool examination. Bulletin of the United States Army Medical Department. 1948; 8(4):326.
22. Bruzzi P, Green SB, Byar DP, Brinton LA, Schairer C. Estimating the population attributable risk for multiple risk factors using case-control data. American journal of epidemiology. 1985; 122(5):904-14. Epub 1985/11/01. PMID: 4050778.
23. Lopman B, Simmons K, Gambhir M, Vinje J, Parashar U. Epidemiologic Implications of Asymptomatic Reinfection: A Mathematical Modeling Study of Norovirus. American journal of epidemiology. 2013. Epub 2013/12/07. doi: 10.1093/aje/kwt287 PMID: 24305574.
24. Yori PP, Schwab K, Gilman RH, Nappier S, Portocarrero DV, Black RE, et al. Norovirus highly prevalent cause of endemic acute diarrhea in children in the peruvian Amazon. The Pediatric infectious disease journal. 2009; 28(9):844-7. Epub 2009/07/29. doi: 10.1097/INF.0b013e3181a24730 PMID: 19636281.
25. Lindesmith LC, Donaldson EF, Lobue AD, Cannon JL, Zheng DP, Vinje J, et al. Mechanisms of GII.4 norovirus persistence in human populations. PLoS medicine. 2008; 5(2):e31. Epub 2008/02/15. doi: 10.1371/journal.pmed.0050031 PMID: 18271619; PubMed Central PMCID: PMC2235898.
26. Payne DC, Vinje J, Szilagyi PG, Edwards KM, Staat MA, Weinberg GA, et al. Norovirus and medically attended gastroenteritis in U.S. children. The New England journal of medicine. 2013; 368(12):1121-30. Epub 2013/03/22. doi: 10.1056/NEJMsa1206589 PMID: 23514289.
27. Blanco Fernandez MD, Torres C, Martinez LC, Giordano MO, Masachessi G, Barril PA, et al. Genetic and evolutionary characterization of norovirus from sewage and surface waters in Cordoba City, Argentina. Infection, genetics and evolution: journal of molecular epidemiology and evolutionary genetics in infectious diseases. 2011; 11(7):1631-7. Epub 2011/06/28. doi: 10.1016/j.meegid.2011.06.005 PMID: 21703365.
28. Ferreira MS, Victoria M, Carvalho-Costa FA, Vieira CB, Xavier MP, Fioretti JM, et al. Surveillance of norovirus infections in the state of Rio De Janeiro, Brazil 2005-2008. Journal of medical virology. 2010; 82(8):1442-8. Epub 2010/06/24. doi: 10.1002/jmv.21831 PMID: 20572088.
29. McAtee CL, Webman R, Gilman RH, Mejia C, Bern C, Apaza S, et al. Molecular epidemiology of postrotavirus vaccine viral diarrhea in hospitalized Bolivian children.
30. Chan MC, Sung JJ, Lam RK, Chan PK, Lee NL, Lai RW, et al. Fecal viral load and norovirus-associated gastroenteritis. Emerging infectious diseases. 2006; 12(8):1278-80. Epub 2006/09/13. doi: 10.3201/eid1208.060081 PMID: 16965715; PubMed Central PMCID: PMC3291221.
31. Lee N, Chan MC, Wong B, Choi KW, Sin W, Lui G, et al. Fecal viral concentration and diarrhea in norovirus gastroenteritis. Emerging infectious diseases. 2007; 13(9):1399-401. Epub 2008/02/07. doi: 10.3201/eid1309.061535 PMID: 18252121; PubMed Central PMCID: PMC2857278.
32. Desai R, Hembree CD, Handel A, Matthews JE, Dickey BW, McDonald S, et al. Severe outcomes are associated with genogroup 2 genotype 4 norovirus outbreaks: a systematic literature review. Clinical infectious diseases: an official publication of the Infectious Diseases Society of America. 2012; 55 (2):189-93. Epub 2012/04/12. doi: 10.1093/cid/cis372 PMID: 22491335; PubMed Central PMCID: PMC3491774.
33. Jones FR, Sanchez JL, Meza R, Batsel TM, Burga R, Canal E, et al. Short report: High incidence of shigellosis among Peruvian soldiers deployed in the Amazon River basin. The American journal of tropical medicine and hygiene. 2004; 70(6):663-5. Epub 2004/06/24. PMID: 15211010.
34. Jung RC, Beaver PC. Clinical observations on Trichocephalus trichiurus (whipworm) infestation in children. Pediatrics. 1951; 8(4):548-57. Epub 1951/10/01. PMID: 14882909.
35. Gilman RH, Davis C, Fitzgerald F. Heavy Trichuris infection and amoebic dysentery in Orang Asli children. A comparison of the two diseases. Transactions of the Royal Society of Tropical Medicine and Hygiene. 1976; 70(4):313-6. Epub 1976/01/01. PMID: 1006759.
36. Lello J, Knopp S, Mohammed KA, Khamis IS, Utzinger J, Viney ME. The relative contribution of coinfection to focal infection risk in children. Proceedings Biological sciences/The Royal Society. 2013; 280(1754):20122813. Epub 2013/01/11. doi: 10.1098/rspb.2012.2813 PMID: 23303547; PubMed Central PMCID: PMC3574331.
37. Atmar RL, Opekun AR, Gilger MA, Estes MK, Crawford SE, Neill FH, et al. Norwalk virus shedding after experimental human infection. Emerging infectious diseases. 2008; 14(10):1553-7. Epub 2008/10/02. doi: 10.3201/eid1410.080117 PMID: 18826818; PubMed Central PMCID: PMCPmc2609865.
38. Lam TT, Zhu H, Smith DK, Guan Y, Holmes EC, Pybus OG. The recombinant origin of emerging human norovirus GII.4/2008: intra-genotypic exchange of the capsid P2 domain. The Journal of general virology. 2012; 93(Pt 4):817-22. Epub 2012/01/13. doi: 10.1099/vir.0.039057-0 PMID: 22238233.