Fate of a mutation in a fluctuating environment

Proceedings of the National Academy of Sciences of the United States of America

Volumn 112, Issue 36, 2015, Pages E5021-E5028

  Cvijović, Ivana ^a,b   Good, Benjamin H ^a,c   Jerison, Elizabeth R ^a,c   Desai, Michael M ^a,c  

^a HARVARD UNIVERSITY   (United States)

^b HARVARD MEDICAL SCHOOL   (United States)

^c HARVARD UNIVERSITY   (United States)

Author keywords

Effective diffusion; Fixation probability; Fluctuating environment; Population genetics

Indexed keywords

ARTICLE; ENVIRONMENTAL CHANGE; EVOLUTIONARY ADAPTATION; GENE FREQUENCY; GENETIC DRIFT; LOSS OF FUNCTION MUTATION; MOLECULAR EVOLUTION; MUTATION; MUTATION RATE; NATURAL SELECTION; POPULATION GENETICS; POPULATION SIZE; PRIORITY JOURNAL; SEASONAL VARIATION; ADAPTATION; ALGORITHM; ANIMAL; BIOLOGICAL MODEL; ENVIRONMENT; GENETIC SELECTION; GENETICS; HUMAN;

ADAPTATION, PHYSIOLOGICAL; ALGORITHMS; ANIMALS; ENVIRONMENT; EVOLUTION, MOLECULAR; GENETICS, POPULATION; HUMANS; MODELS, GENETIC; MUTATION; SELECTION, GENETIC;

EID: 84941249295     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1505406112     Document Type: Article

References (45)

1. Drlica K (2003) The mutant selection window and antimicrobial resistance. J Antimicrob Chemother 52(1):11-17.
2. Bergland AO, Behrman EL, O'Brien KR, Schmidt PS, Petrov DA (2014) Genomic evidence of rapid and stable adaptive oscillations over seasonal time scales in Drosophila. PLoS Genet 10(11):e1004775.
3. Yona AH, et al. (2012) Chromosomal duplication is a transient evolutionary solution to stress. Proc Natl Acad Sci USA 109(51):21010-21015.
4. Rodríguez-Verdugo A, Carrillo-Cisneros D, González-González A, Gaut BS, Bennett AF (2014) Different tradeoffs result from alternate genetic adaptations to a common environment. Proc Natl Acad Sci USA 111(33):12121-12126.
5. Leiby N, Marx CJ (2014) Metabolic erosion primarily through mutation accumulation, and not tradeoffs, drives limited evolution of substrate specificity in Escherichia coli. PLoS Biol 12(2):e1001789.
6. Turner PE, Elena SF (2000) Cost of host radiation in an RNA virus. Genetics 156(4):1465-1470.
7. Gerland U, Hwa T (2009) Evolutionary selection between alternative modes of gene regulation. Proc Natl Acad Sci USA 106(22):8841-8846.
8. Mustonen V, Lässig M (2008) Molecular evolution under fitness fluctuations. Phys Rev Lett 100(10):108101.
9. Gillespie JH (1991) The Causes of Molecular Evolution (Oxford Univ Press, New York).
10. Mustonen V, Lässig M (2009) From fitness landscapes to seascapes: Non-equilibrium dynamics of selection and adaptation. Trends Genet 25(3):111-119.
11. Kendall DG (1948) On the generalized "birth-and-death" process. Ann Math Stat 19(1):1-15.
12. Dempster ER (1955) Maintenance of genetic heterogeneity. Cold Spring Harb Symp Quant Biol 20:25-31, discussion, 31-32.
13. Lewontin RC, Cohen D (1969) On population growth in a randomly varying environment. Proc Natl Acad Sci USA 62(4):1056-1060.
14. Levins R (1969) The effect of random variations of different types on population growth. Proc Natl Acad Sci USA 62(4):1061-1065.
15. Hartl DL, Cook RD (1973) Balanced polymorphisms of quasineutral alleles. Theor Popul Biol 4:163-172.
16. Hartl DL, Cook RD (1974) Autocorrelated random environments and their effects on gene frequency. Evolution 28:275-280.
17. Cook RD, Hartl DL (1974) Uncorrelated random environments and their effects on gene frequency. Evolution 28:265-274.
18. Karlin S, Lieberman U (1974) Random temporal variation in selection intensities: case of large population size. Theor Popul Biol 6(3):355-382.
19. Capocelli RM, Ricciardi LM (1974) A diffusion model for population growth in random environment. Theor Popul Biol 5(1):28-41.
20. Levikson B, Karlin S (1975) Random temporal variation in selection intensities acting on infinite diploid populations: Diffusion method analysis. Theor Popul Biol 8(3):292-300.
21. Gillespie JH, Guess HA (1978) The effects of environmental autocorrelations on the progress of selection in a random environment. Am Nat 112:897-909.
22. Kussell E, Leibler S (2005) Phenotypic diversity, population growth, and information in fluctuating environments. Science 309(5743):2075-2078.
23. Leibler S, Kussell E (2010) Individual histories and selection in heterogeneous populations. Proc Natl Acad Sci USA 107(29):13183-13188.
24. Uecker H, Hermisson J (2011) On the fixation process of a beneficial mutation in a variable environment. Genetics 188(4):915-930.
25. Wright S (1948) On the roles of directed and random changes in gene frequency in the genetics of populations. Evolution 2(4):279-294.
26. Kimura M (1954) Process leading to quasi-fixation of genes in natural populations due to random fluctuation of selection intensities. Genetics 39(3):280-295.
27. Kimura M (1962) On the probability of fixation of mutant genes in a population. Genetics 47:713-719.
28. Ohta T (1972) Fixation probability of a mutant influenced by random fluctuation of selection intensity. Genet Res 19(1):33-38.
29. Jensen L, Pollak E (1969) Random selective advantages of a gene in a finite population. J Appl Probab 6(1):19-37.
30. Jensen L (1973) Random selective advantages of genes and their probabilities of fixation. Genet Res 21(3):215-219.
31. Gillespie JH (1973) Natural selection with varying selection coefficients-A haploid model. Genet Res 21(2):115-120.
32. Takahata N, Ishii K, Matsuda H (1975) Effect of temporal fluctuation of selection coefficient on gene frequency in a population. Proc Natl Acad Sci USA 72(11):4541-4545.
33. Takahata N, Kimura M (1979) Genetic variability maintained in a finite population under mutation and autocorrelated random fluctuation of selection intensity. Proc Natl Acad Sci USA 76(11):5813-5817.
34. Mustonen V, Lässig M (2007) Adaptations to fluctuating selection in Drosophila. Proc Natl Acad Sci USA 104(7):2277-2282.
35. Ewens WJ (2004) Mathematical Population Genetics I (Springer, New York).
36. Fisher DS (2007) Evolutionary dynamics. Les Houches, eds. Bouchaud JP, Mézard M, Dalibard J (Elsevier, Paris), Vol. 85, pp. 395-446.
37. Masel J, King OD, Maughan H (2007) The loss of adaptive plasticity during long periods of environmental stasis. Am Nat 169(1):38-46.
38. Lahti DC, et al. (2009) Relaxed selection in the wild. Trends Ecol Evol 24(9):487-496.
39. Eames M, Kortemme T (2012) Cost-benefit tradeoffs in engineered lac operons. Science 336(6083):911-915.
40. Korolev KS, Avlund M, Hallatschek O, Nelson DR (2010) Genetic demixing and evolution in linear stepping stone models. Rev Mod Phys 82(2):1691-1718.
41. der R, Epstein C, Plotkin JB (2012) Dynamics of neutral and selected alleles when the offspring distribution is skewed. Genetics 191(4):1331-1344.
42. Haldane J, Jayakar SD (1963) Polymorphism due to selection of varying direction. J Genet 58(2):237-242.
43. Hedrick PW (1974) Genetic variation in a heterogeneous environment. I. Temporal heterogeneity and the absolute dominance model. Genetics 78(2):757-770.
44. Cook RD, Hartl DL (1975) Stochastic selection in large and small populations. Theor Popul Biol 7(1):55-63.
45. Gillespie JH, Langley CH (1974) A general model to account for enzyme variation in natural populations. Genetics 76(4):837-848.