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Volumn 525, Issue 7568, 2015, Pages 230-233

Computational design of co-assembling protein-DNA nanowires

Author keywords

[No Author keywords available]

Indexed keywords

DNA; DNA A; DNA HYBRID; DOUBLE STRANDED DNA; EPITOPE; HOMODIMER; NANOMATERIAL; NANOWIRE; RNA; ENGRAIL PROTEIN, DROSOPHILA; HOMEODOMAIN PROTEIN; TRANSCRIPTION FACTOR;

EID: 84941243015     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature14874     Document Type: Article
Times cited : (71)

References (30)
  • 2
    • 0025804117 scopus 로고
    • Synthesis fromDNAof amoleculewiththe connectivity of a cube
    • Chen, J.H.Seeman, N. C. Synthesis fromDNAof amoleculewiththe connectivity of a cube. Nature 350, 631-633 (1991).
    • (1991) Nature , vol.350 , pp. 631-633
    • Chen, J.H.1    Seeman, N.C.2
  • 3
    • 85015106657 scopus 로고    scopus 로고
    • DNA in a material world
    • Seeman, N. C. DNA in a material world. Nature 421, 427-431 (2003).
    • (2003) Nature , vol.421 , pp. 427-431
    • Seeman, N.C.1
  • 4
    • 33645028600 scopus 로고    scopus 로고
    • FoldingDNAto create nanoscale shapes and patterns
    • Rothemund, P.W.K. FoldingDNAto create nanoscale shapes and patterns. Nature 440, 297-302 (2006).
    • (2006) Nature , vol.440 , pp. 297-302
    • Rothemund, P.W.K.1
  • 5
    • 66249137759 scopus 로고    scopus 로고
    • Self-assembly of DNA into nanoscale three-dimensional shapes
    • Douglas, S. M. et al. Self-assembly of DNA into nanoscale three-dimensional shapes. Nature 459, 414-418 (2009).
    • (2009) Nature , vol.459 , pp. 414-418
    • Douglas, S.M.1
  • 6
    • 0027416047 scopus 로고
    • Spontaneous assembly of a selfcomplementary oligopeptide to forma stable macroscopic membrane
    • Zhang, S., Holmes, T., Lockshin, C., Rich, A. Spontaneous assembly of a selfcomplementary oligopeptide to forma stable macroscopic membrane. Proc. Natl Acad. Sci. USA 90, 3334-3338 (1993).
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 3334-3338
    • Zhang, S.1    Holmes, T.2    Lockshin, C.3    Rich, A.4
  • 7
    • 0141765883 scopus 로고    scopus 로고
    • Fabrication of novel biomaterials through molecular self-assembly
    • Zhang, S. Fabrication of novel biomaterials through molecular self-assembly. Nature Biotechnol. 21, 1171-1178 (2003).
    • (2003) Nature Biotechnol , vol.21 , pp. 1171-1178
    • Zhang, S.1
  • 8
    • 84877588832 scopus 로고    scopus 로고
    • Self-assembling cages from coiled-coil peptide modules
    • Fletcher, J. M. et al. Self-assembling cages from coiled-coil peptide modules. Science 340, 595-599 (2013).
    • (2013) Science , vol.340 , pp. 595-599
    • Fletcher, J.M.1
  • 9
    • 84860262383 scopus 로고    scopus 로고
    • Metal-directed, chemically tunable assembly of one-, two-and three-dimensional crystalline protein arrays
    • Brodin, J. D. et al. Metal-directed, chemically tunable assembly of one-, two-and three-dimensional crystalline protein arrays. Nature Chem. 4, 375-382 (2012).
    • (2012) Nature Chem , vol.4 , pp. 375-382
    • Brodin, J.D.1
  • 10
    • 84861652462 scopus 로고    scopus 로고
    • Structure of a 16-nm cage designed by using protein oligomers
    • Lai, Y. T., Cascio, D., Yeates, T. O. Structure of a 16-nm cage designed by using protein oligomers. Science 336, 1129 (2012).
    • (2012) Science , vol.336 , pp. 1129
    • Lai, Y.T.1    Cascio, D.2    Yeates, T.O.3
  • 11
    • 84861676223 scopus 로고    scopus 로고
    • Computational design of self-assembling protein nanomaterials with atomic level accuracy
    • King, N. P. et al. Computational design of self-assembling protein nanomaterials with atomic level accuracy. Science 336, 1171-1174 (2012).
    • (2012) Science , vol.336 , pp. 1171-1174
    • King, N.P.1
  • 12
    • 84860799377 scopus 로고    scopus 로고
    • Computational design of a protein crystal
    • Lanci, C. J. et al. Computational design of a protein crystal. Proc. Natl Acad. Sci. USA 109, 7304-7309 (2012).
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 7304-7309
    • Lanci, C.J.1
  • 13
    • 84902006780 scopus 로고    scopus 로고
    • Accurate design of co-assembling multi-component protein nanomaterials
    • King, N. P. et al. Accurate design of co-assembling multi-component protein nanomaterials. Nature 510, 103-108 (2014).
    • (2014) Nature , vol.510 , pp. 103-108
    • King, N.P.1
  • 14
    • 84908235298 scopus 로고    scopus 로고
    • High thermodynamic stability of parametrically designed helical bundles
    • Huang, P. S. et al. High thermodynamic stability of parametrically designed helical bundles. Science 346, 481-485 (2014).
    • (2014) Science , vol.346 , pp. 481-485
    • Huang, P.S.1
  • 15
    • 84908244550 scopus 로고    scopus 로고
    • Computational design of water-soluble a-helical barrels
    • Thomson, A. R. et al. Computational design of water-soluble a-helical barrels. Science 346, 485-488 (2014).
    • (2014) Science , vol.346 , pp. 485-488
    • Thomson, A.R.1
  • 16
    • 80052040413 scopus 로고    scopus 로고
    • Aptamer-conjugated DNA icosahedral nanoparticles as a carrier of doxorubicin for cancer therapy
    • Chang, M., Yang, C. S., Huang, D. M. Aptamer-conjugated DNA icosahedral nanoparticles as a carrier of doxorubicin for cancer therapy. ACS Nano 5, 6156-6163 (2011).
    • (2011) ACS Nano , vol.5 , pp. 6156-6163
    • Chang, M.1    Yang, C.S.2    Huang, D.M.3
  • 17
    • 84901249356 scopus 로고    scopus 로고
    • Universal computing byDNAorigami robots in a living animal
    • Amir, Y. et al. Universal computing byDNAorigami robots in a living animal. Nature Nanotechnol. 9, 353-357 (2014).
    • (2014) Nature Nanotechnol , vol.9 , pp. 353-357
    • Amir, Y.1
  • 18
    • 26244465659 scopus 로고    scopus 로고
    • Applications of hybrid organic-inorganic nanocomposites
    • Sanchez, C., Julian, B., Belleville, P., Popall, M. Applications of hybrid organic-inorganic nanocomposites. J. Mater. Chem. 15, 3559-3592 (2005).
    • (2005) J. Mater. Chem , vol.15 , pp. 3559-3592
    • Sanchez, C.1    Julian, B.2    Belleville, P.3    Popall, M.4
  • 19
    • 79957589641 scopus 로고    scopus 로고
    • Computational design of virus-like protein assemblies on carbon nanotube surfaces
    • Grigoryan, G. et al. Computational design of virus-like protein assemblies on carbon nanotube surfaces. Science 332, 1071-1076 (2011).
    • (2011) Science , vol.332 , pp. 1071-1076
    • Grigoryan, G.1
  • 20
    • 0036523464 scopus 로고    scopus 로고
    • DNA-directed assembly of bienzymic complexes fromin vivo biotinylatedNAD(P)H:FMNoxidoreductase and luciferase
    • Niemeyer, C. M., Koehler, J., Wuerdemann, C. DNA-directed assembly of bienzymic complexes fromin vivo biotinylatedNAD(P)H:FMNoxidoreductase and luciferase. ChemBioChem 3, 242-245 (2002).
    • (2002) ChemBioChem , vol.3 , pp. 242-245
    • Niemeyer, C.M.1    Koehler, J.2    Wuerdemann, C.3
  • 21
    • 0026644604 scopus 로고
    • Immuno-PCR: Very sensitive antigen detection by means of specific antibody-DNA conjugates
    • Sano, T.,Smith, C. L., Cantor, C. R. Immuno-PCR: very sensitive antigen detection by means of specific antibody-DNA conjugates. Science 258, 120-122 (1992).
    • (1992) Science , vol.258 , pp. 120-122
    • Sano, T.1    Smith, C.L.2    Cantor, C.R.3
  • 22
    • 66449109109 scopus 로고    scopus 로고
    • Self-assembly of enzymes on DNA scaffolds: En route to biocatalytic cascades and the synthesis of metallic nanowires
    • Wilner, O. I., Shimron, S., Weizmann, Y., Wang, Z. G., Willner, I. Self-assembly of enzymes on DNA scaffolds: en route to biocatalytic cascades and the synthesis of metallic nanowires. Nano Lett. 9, 2040-2043 (2009).
    • (2009) Nano Lett , vol.9 , pp. 2040-2043
    • Wilner, O.I.1    Shimron, S.2    Weizmann, Y.3    Wang, Z.G.4    Willner, I.5
  • 23
    • 79960697001 scopus 로고    scopus 로고
    • Organization of intracellular reactions with rationally designed RNA assemblies
    • Delebecque, C. J., Lindner, A. B., Silver, P. A., Aldaye, F. A. Organization of intracellular reactions with rationally designed RNA assemblies. Science 333, 470-474 (2011).
    • (2011) Science , vol.333 , pp. 470-474
    • Delebecque, C.J.1    Lindner, A.B.2    Silver, P.A.3    Aldaye, F.A.4
  • 24
    • 0032570750 scopus 로고    scopus 로고
    • The DNA binding specificity of engrailed homeodomain
    • Draganescu, A., Tullius, T. D. The DNA binding specificity of engrailed homeodomain. J. Mol. Biol. 276, 529-536 (1998).
    • (1998) J. Mol. Biol , vol.276 , pp. 529-536
    • Draganescu, A.1    Tullius, T.D.2
  • 25
    • 27644522929 scopus 로고    scopus 로고
    • Photocontrol of DNA binding specificity of a miniature engrailed homeodomain
    • Guerrero, L., Smart, O. S., Woolley, G. A., Allemann, R. K. Photocontrol of DNA binding specificity of a miniature engrailed homeodomain. J.Am. Chem. Soc. 127, 15624-15629 (2005).
    • (2005) J.Am. Chem. Soc , vol.127 , pp. 15624-15629
    • Guerrero, L.1    Smart, O.S.2    Woolley, G.A.3    Allemann, R.K.4
  • 26
    • 0036307678 scopus 로고    scopus 로고
    • Electrostatics significantly affect the stability of designed homeodomain variants
    • Marshall, S. A., Morgan, C. S., Mayo, S. L. Electrostatics significantly affect the stability of designed homeodomain variants. J. Mol. Biol. 316, 189-199 (2002).
    • (2002) J. Mol. Biol , vol.316 , pp. 189-199
    • Marshall, S.A.1    Morgan, C.S.2    Mayo, S.L.3
  • 27
    • 34547691430 scopus 로고    scopus 로고
    • Full-sequence computational design and solution structure of a thermostable protein variant
    • Shah, P. S. et al. Full-sequence computational design and solution structure of a thermostable protein variant. J. Mol. Biol. 372, 1-6 (2007).
    • (2007) J. Mol. Biol , vol.372 , pp. 1-6
    • Shah, P.S.1
  • 28
    • 84940548990 scopus 로고    scopus 로고
    • Computational design and experimental verification of a symmetric protein homodimer
    • Mou, Y., Huang, P.-S., Hsu, F.-C., Huang, S.-J., Mayo, S. L. Computational design and experimental verification of a symmetric protein homodimer. Proc. Natl Acad. Sci. USA http://dx.doi.org/10.1073/pnas.1505072112 (2015).
    • (2015) Proc. Natl Acad. Sci. USA
    • Mou, Y.1    Huang, P.-S.2    Hsu, F.-C.3    Huang, S.-J.4    Mayo, S.L.5
  • 29
    • 84938198639 scopus 로고    scopus 로고
    • Using molecular dynamics simulations as an aid in the prediction of domain swapping of computationally designed protein variants
    • Mou, Y., Huang, P.-S., Thomas, L. M., Mayo, S. L. Using molecular dynamics simulations as an aid in the prediction of domain swapping of computationally designed protein variants. J. Mol. Biol, 427, 2697-2706 (2015).
    • (2015) J. Mol. Biol , vol.427 , pp. 2697-2706
    • Mou, Y.1    Huang, P.-S.2    Thomas, L.M.3    Mayo, S.L.4
  • 30
    • 0034621827 scopus 로고    scopus 로고
    • Selection of peptides with semiconductor binding specificity for directed nanocrystal assembly
    • Whaley, S. R., English, D. S., Hu, E. L., Barbara, P. F., Belcher, A. M. Selection of peptides with semiconductor binding specificity for directed nanocrystal assembly. Nature 405, 665-668 (2000).
    • (2000) Nature , vol.405 , pp. 665-668
    • Whaley, S.R.1    English, D.S.2    Hu, E.L.3    Barbara, P.F.4    Belcher, A.M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.