메뉴 건너뛰기




Volumn 97, Issue 3, 2015, Pages 404-418

Accurate Non-parametric Estimation of Recent Effective Population Size from Segments of Identity by Descent

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; AMYOTROPHIC LATERAL SCLEROSIS; ARTICLE; CAUCASIAN; COMPUTER PROGRAM; CONTROLLED STUDY; EFFECTIVE POPULATION SIZE; FINLAND; GENE FREQUENCY; GENE MUTATION; GENETIC VARIABILITY; GENOME SIZE; GENOTYPE; HUMAN; MAJOR CLINICAL STUDY; MEASUREMENT ACCURACY; MIDDLE AGED; NONPARAMETRIC TEST; POPULATION GROWTH; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM; UNITED KINGDOM; BIOLOGICAL MODEL; CHROMOSOME; COMPUTER SIMULATION; GENE LINKAGE DISEQUILIBRIUM; GENETICS; PEDIGREE; POPULATION DENSITY; POPULATION GENETICS; PROCEDURES;

EID: 84941025723     PISSN: 00029297     EISSN: 15376605     Source Type: Journal    
DOI: 10.1016/j.ajhg.2015.07.012     Document Type: Article
Times cited : (210)

References (27)
  • 1
    • 0001771498 scopus 로고
    • Evolution in Mendelian Populations
    • S. Wright Evolution in Mendelian Populations Genetics 16 1931 97 159
    • (1931) Genetics , vol.16 , pp. 97-159
    • Wright, S.1
  • 2
    • 60349093708 scopus 로고    scopus 로고
    • Fundamental concepts in genetics: effective population size and patterns of molecular evolution and variation
    • B. Charlesworth Fundamental concepts in genetics: effective population size and patterns of molecular evolution and variation Nat. Rev. Genet. 10 2009 195 205
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 195-205
    • Charlesworth, B.1
  • 3
    • 0035779379 scopus 로고    scopus 로고
    • Human population genetics: lessons from Finland
    • J. Kere Human population genetics: lessons from Finland Annu. Rev. Genomics Hum. Genet. 2 2001 103 128
    • (2001) Annu. Rev. Genomics Hum. Genet. , vol.2 , pp. 103-128
    • Kere, J.1
  • 4
    • 84868450328 scopus 로고    scopus 로고
    • Length distributions of identity by descent reveal fine-scale demographic history
    • P.F. Palamara, T. Lencz, A. Darvasi, and I. Pe'er Length distributions of identity by descent reveal fine-scale demographic history Am. J. Hum. Genet. 91 2012 809 822
    • (2012) Am. J. Hum. Genet. , vol.91 , pp. 809-822
    • Palamara, P.F.1    Lencz, T.2    Darvasi, A.3    Pe'er, I.4
  • 6
    • 0015102330 scopus 로고
    • Inbreeding and variance effective numbers in populations with overlapping generations
    • J. Felsenstein Inbreeding and variance effective numbers in populations with overlapping generations Genetics 68 1971 581 597
    • (1971) Genetics , vol.68 , pp. 581-597
    • Felsenstein, J.1
  • 7
    • 84860817223 scopus 로고    scopus 로고
    • Recent explosive human population growth has resulted in an excess of rare genetic variants
    • A. Keinan, and A.G. Clark Recent explosive human population growth has resulted in an excess of rare genetic variants Science 336 2012 740 743
    • (2012) Science , vol.336 , pp. 740-743
    • Keinan, A.1    Clark, A.G.2
  • 8
    • 84864273210 scopus 로고    scopus 로고
    • SNP calling, genotype calling, and sample allele frequency estimation from New-Generation Sequencing data
    • R. Nielsen, T. Korneliussen, A. Albrechtsen, Y. Li, and J. Wang SNP calling, genotype calling, and sample allele frequency estimation from New-Generation Sequencing data PLoS ONE 7 2012 e37558
    • (2012) PLoS ONE , vol.7
    • Nielsen, R.1    Korneliussen, T.2    Albrechtsen, A.3    Li, Y.4    Wang, J.5
  • 9
    • 84895760521 scopus 로고    scopus 로고
    • Characterizing bias in population genetic inferences from low-coverage sequencing data
    • E. Han, J.S. Sinsheimer, and J. Novembre Characterizing bias in population genetic inferences from low-coverage sequencing data Mol. Biol. Evol. 31 2014 723 735
    • (2014) Mol. Biol. Evol. , vol.31 , pp. 723-735
    • Han, E.1    Sinsheimer, J.S.2    Novembre, J.3
  • 10
    • 79960914105 scopus 로고    scopus 로고
    • Inference of human population history from individual whole-genome sequences
    • H. Li, and R. Durbin Inference of human population history from individual whole-genome sequences Nature 475 2011 493 496
    • (2011) Nature , vol.475 , pp. 493-496
    • Li, H.1    Durbin, R.2
  • 11
    • 84905572361 scopus 로고    scopus 로고
    • Inferring human population size and separation history from multiple genome sequences
    • S. Schiffels, and R. Durbin Inferring human population size and separation history from multiple genome sequences Nat. Genet. 46 2014 919 925
    • (2014) Nat. Genet. , vol.46 , pp. 919-925
    • Schiffels, S.1    Durbin, R.2
  • 12
    • 84878716362 scopus 로고    scopus 로고
    • Inferring population size changes with sequence and SNP data: lessons from human bottlenecks
    • L.M. Gattepaille, M. Jakobsson, and M.G. Blum Inferring population size changes with sequence and SNP data: lessons from human bottlenecks Heredity (Edinb) 110 2013 409 419
    • (2013) Heredity (Edinb) , vol.110 , pp. 409-419
    • Gattepaille, L.M.1    Jakobsson, M.2    Blum, M.G.3
  • 13
    • 84879671007 scopus 로고    scopus 로고
    • Inferring demographic history from a spectrum of shared haplotype lengths
    • K. Harris, and R. Nielsen Inferring demographic history from a spectrum of shared haplotype lengths PLoS Genet. 9 2013 e1003521
    • (2013) PLoS Genet. , vol.9
    • Harris, K.1    Nielsen, R.2
  • 14
    • 84878314759 scopus 로고    scopus 로고
    • The geography of recent genetic ancestry across Europe
    • P. Ralph, and G. Coop The geography of recent genetic ancestry across Europe PLoS Biol. 11 2013 e1001555
    • (2013) PLoS Biol. , vol.11
    • Ralph, P.1    Coop, G.2
  • 15
    • 0000185131 scopus 로고    scopus 로고
    • Quasi-likelihood and generalizing the EM algorithm
    • C.C. Heyde, and R. Morton Quasi-likelihood and generalizing the EM algorithm J. Roy. Stat. Soc. B Met. 58 1996 317 327
    • (1996) J. Roy. Stat. Soc. B Met. , vol.58 , pp. 317-327
    • Heyde, C.C.1    Morton, R.2
  • 16
    • 84890131372 scopus 로고    scopus 로고
    • Detecting identity by descent and estimating genotype error rates in sequence data
    • B.L. Browning, and S.R. Browning Detecting identity by descent and estimating genotype error rates in sequence data Am. J. Hum. Genet. 93 2013 840 851
    • (2013) Am. J. Hum. Genet. , vol.93 , pp. 840-851
    • Browning, B.L.1    Browning, S.R.2
  • 18
    • 84878589007 scopus 로고    scopus 로고
    • Improving the accuracy and efficiency of identity-by-descent detection in population data
    • B.L. Browning, and S.R. Browning Improving the accuracy and efficiency of identity-by-descent detection in population data Genetics 194 2013 459 471
    • (2013) Genetics , vol.194 , pp. 459-471
    • Browning, B.L.1    Browning, S.R.2
  • 20
    • 79851497145 scopus 로고    scopus 로고
    • A fast, powerful method for detecting identity by descent
    • B.L. Browning, and S.R. Browning A fast, powerful method for detecting identity by descent Am. J. Hum. Genet. 88 2011 173 182
    • (2011) Am. J. Hum. Genet. , vol.88 , pp. 173-182
    • Browning, B.L.1    Browning, S.R.2
  • 21
    • 61449135985 scopus 로고    scopus 로고
    • Fast and flexible simulation of DNA sequence data
    • G.K. Chen, P. Marjoram, and J.D. Wall Fast and flexible simulation of DNA sequence data Genome Res. 19 2009 136 142
    • (2009) Genome Res. , vol.19 , pp. 136-142
    • Chen, G.K.1    Marjoram, P.2    Wall, J.D.3
  • 22
    • 77954202497 scopus 로고    scopus 로고
    • DendroPy: a Python library for phylogenetic computing
    • J. Sukumaran, and M.T. Holder DendroPy: a Python library for phylogenetic computing Bioinformatics 26 2010 1569 1571
    • (2010) Bioinformatics , vol.26 , pp. 1569-1571
    • Sukumaran, J.1    Holder, M.T.2
  • 23
    • 0027507885 scopus 로고
    • Disease gene mapping in isolated human populations: the example of Finland
    • A. de la Chapelle Disease gene mapping in isolated human populations: the example of Finland J. Med. Genet. 30 1993 857 865
    • (1993) J. Med. Genet. , vol.30 , pp. 857-865
    • De La Chapelle, A.1
  • 25
    • 85052488788 scopus 로고    scopus 로고
    • Simple life-history traits explain key effective population size ratios across diverse taxa
    • R.S. Waples, G. Luikart, J.R. Faulkner, and D.A. Tallmon Simple life-history traits explain key effective population size ratios across diverse taxa Proc. Biol. Sci. 280 2013 20131339
    • (2013) Proc. Biol. Sci. , vol.280 , pp. 20131339
    • Waples, R.S.1    Luikart, G.2    Faulkner, J.R.3    Tallmon, D.A.4
  • 26
    • 84863393715 scopus 로고    scopus 로고
    • Genome-wide association study identifies a variant in HDAC9 associated with large vessel ischemic stroke
    • C. Bellenguez, S. Bevan, A. Gschwendtner, C.C. Spencer, A.I. Burgess, M. Pirinen, C.A. Jackson, M. Traylor, A. Strange, Z. Su, et al. International Stroke Genetics Consortium (ISGC) Wellcome Trust Case Control Consortium 2 (WTCCC2) Genome-wide association study identifies a variant in HDAC9 associated with large vessel ischemic stroke Nat. Genet. 44 2012 328 333
    • (2012) Nat. Genet. , vol.44 , pp. 328-333
    • Bellenguez, C.1    Bevan, S.2    Gschwendtner, A.3    Spencer, C.C.4    Burgess, A.I.5    Pirinen, M.6    Jackson, C.A.7    Traylor, M.8    Strange, A.9    Su, Z.10
  • 27
    • 0028874989 scopus 로고
    • Effective population size/adult population size ratios in wildlife: a review
    • R. Frankham Effective population size/adult population size ratios in wildlife: a review Genet. Res. 66 1995 95 107 10.1017/S0016672300034455
    • (1995) Genet. Res. , vol.66 , pp. 95-107
    • Frankham, R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.