Activation of Big Grain1 significantly improves grain size by regulating auxin transport in rice

Proceedings of the National Academy of Sciences of the United States of America

Volumn 112, Issue 35, 2015, Pages 11102-11107

  Liu, Linchuan ^a   Tong, Hongning ^a   Xiao, Yunhua ^a   Che, Ronghui ^a   Xu, Fan ^a   Hu, Bin ^a   Liang, Chengzhen ^a   Chu, Jinfang ^a   Li, Jiayang ^a   Chu, Chengcai ^a  

^a INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

Author keywords

Auxin; Big grain1; Biomass; Grain size; Grain yield

Indexed keywords

ARTICLE; AUXIN TRANSPORT; BIOMASS; CONTROLLED STUDY; GENE INSERTION; GENE MUTATION; GENOMIC FRAGMENT; GRAIN; GRAIN YIELD; MOLECULAR CLONING; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; PRODUCTIVITY; QUANTITATIVE TRAIT LOCUS; SEED WEIGHT; SOYBEAN; VASCULAR TISSUE; GENETICS; METABOLISM; ORYZA; TRANSPORT AT THE CELLULAR LEVEL;

INDOLEACETIC ACID DERIVATIVE; VEGETABLE PROTEIN;

BIOLOGICAL TRANSPORT; BIOMASS; INDOLEACETIC ACIDS; ORYZA; PLANT PROTEINS;

EID: 84940992894     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1512748112     Document Type: Article

References (56)

1. Sakamoto T, Matsuoka M (2008) Identifying and exploiting grain yield genes in rice. Curr Opin Plant Biol 11(2):209-214.
2. Ikeda M, Miura K, Aya K, Kitano H, Matsuoka M (2013) Genes offering the potential for designing yield-related traits in rice. Curr Opin Plant Biol 16(2):213-220.
3. Xing Y, Zhang Q (2010) Genetic and molecular bases of rice yield. Annu Rev Plant Biol 61:421-442.
4. Song XJ, Huang W, Shi M, Zhu MZ, Lin HX (2007) A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase. Nat Genet 39(5):623-630.
5. Weng J, et al. (2008) Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight. Cell Res 18(12):1199-1209.
6. Shomura A, et al. (2008) Deletion in a gene associated with grain size increased yields during rice domestication. Nat Genet 40(8):1023-1028.
7. Ishimaru K, et al. (2013) Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield. Nat Genet 45(6):707-711.
8. Zhang X, et al. (2012) Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice. Proc Natl Acad Sci USA 109(52):21534-21539.
9. Qi P, et al. (2012) The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3. Cell Res 22(12):1666-1680.
10. Zuo J, Li J (2014) Molecular genetic dissection of quantitative trait loci regulating rice grain size. Annu Rev Genet 48(1):99-118.
11. Wang S, et al. (2012) Control of grain size, shape and quality by OsSPL16 in rice. Nat Genet 44(8):950-954.
12. Miura K, Ashikari M, Matsuoka M (2011) The role of QTLs in the breeding of high-yielding rice. Trends Plant Sci 16(6):319-326.
13. Gonzalez N, Beemster GT, Inzé D (2009) David and Goliath: What can the tiny weed Arabidopsis teach us to improve biomass production in crops? Curr Opin Plant Biol 12(2):157-164.
14. Li J, Nie X, Tan JL, Berger F (2013) Integration of epigenetic and genetic controls of seed size by cytokinin in Arabidopsis. Proc Natl Acad Sci USA 110(38):15479-15484.
15. Schruff MC, et al. (2006) The AUXIN RESPONSE FACTOR 2 gene of Arabidopsis links auxin signalling, cell division, and the size of seeds and other organs. Development 133(2):251-261.
16. Hu Y, Xie Q, Chua NH (2003) The Arabidopsis auxin-inducible gene ARGOS controls lateral organ size. Plant Cell 15(9):1951-1961.
17. Mizukami Y, Fischer RL (2000) Plant organ size control: AINTEGUMENTA regulates growth and cell numbers during organogenesis. Proc Natl Acad Sci USA 97(2):942-947.
18. Teale WD, Paponov IA, Palme K (2006) Auxin in action: Signalling, transport and the control of plant growth and development. Nat Rev Mol Cell Biol 7(11):847-859.
19. Zhao Y (2010) Auxin biosynthesis and its role in plant development. Annu Rev Plant Biol 61:49-64.
20. Dai X, et al. (2013) The biochemical mechanism of auxin biosynthesis by an Arabidopsis YUCCA flavin-containing monooxygenase. J Biol Chem 288(3):1448-1457.
21. Zhao Y (2012) Auxin biosynthesis: A simple two-step pathway converts tryptophan to indole-3-acetic acid in plants. Mol Plant 5(2):334-338.
22. Wang B, et al. (2015) Tryptophan-independent auxin biosynthesis contributes to early embryogenesis in Arabidopsis. Proc Natl Acad Sci USA 112(15):4821-4826.
23. Chapman EJ, Estelle M (2009) Mechanism of auxin-regulated gene expression in plants. Annu Rev Genet 43:265-285.
24. Kepinski S, Leyser O (2005) The Arabidopsis F-box protein TIR1 is an auxin receptor. Nature 435(7041):446-451.
25. Dharmasiri N, Dharmasiri S, Estelle M (2005) The F-box protein TIR1 is an auxin receptor. Nature 435(7041):441-445.
26. Kim J, Harter K, Theologis A (1997) Protein-protein interactions among the Aux/IAA proteins. Proc Natl Acad Sci USA 94(22):11786-11791.
27. Bennett MJ, et al. (1996) Arabidopsis AUX1 gene: A permease-like regulator of root gravitropism. Science 273(5277):948-950.
28. Gälweiler L, et al. (1998) Regulation of polar auxin transport by AtPIN1 in Arabidopsis vascular tissue. Science 282(5397):2226-2230.
29. Péret B, et al. (2012) AUX/LAX genes encode a family of auxin influx transporters that perform distinct functions during Arabidopsis development. Plant Cell 24(7):2874-2885.
30. Balzan S, Johal GS, Carraro N (2014) The role of auxin transporters in monocots development. Front Plant Sci 5:393.
31. Reed RC, Brady SR, Muday GK (1998) Inhibition of auxin movement from the shoot into the root inhibits lateral root development in Arabidopsis. Plant Physiol 118(4):1369-1378.
32. Noh B, Bandyopadhyay A, Peer WA, Spalding EP, Murphy AS (2003) Enhanced graviand phototropism in plant mdr mutants mislocalizing the auxin efflux protein PIN1. Nature 423(6943):999-1002.
33. Li P, et al. (2007) LAZY1 controls rice shoot gravitropism through regulating polar auxin transport. Cell Res 17(5):402-410.
34. Okada K, Ueda J, Komaki MK, Bell CJ, Shimura Y (1991) Requirement of the auxin polar transport system in early stages of Arabidopsis floral bud formation. Plant Cell 3(7):677-684.
35. Liu YG, Mitsukawa N, Oosumi T, Whittier RF (1995) Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR. Plant J 8(3):457-463.
36. Wang H, et al. (2011) Computation-assisted SiteFinding-PCR for isolating flanking sequence tags in rice. Biotechniques 51(6):421-423.
37. Ulmasov T, Murfett J, Hagen G, Guilfoyle TJ (1997) Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements. Plant Cell 9(11):1963-1971.
38. Vieten A, et al. (2005) Functional redundancy of PIN proteins is accompanied by auxin-dependent cross-regulation of PIN expression. Development 132(20):4521-4531.
39. Jensen PJ, Hangarter RP, Estelle M (1998) Auxin transport is required for hypocotyl elongation in light-grown but not dark-grown Arabidopsis. Plant Physiol 116(2):455-462.
40. Lin R, Wang H (2005) Two homologous ATP-binding cassette transporter proteins, AtMDR1 and AtPGP1, regulate Arabidopsis photomorphogenesis and root development by mediating polar auxin transport. Plant Physiol 138(2):949-964.
41. Chae K, et al. (2012) Arabidopsis SMALL AUXIN UP RNA63 promotes hypocotyl and stamen filament elongation. Plant J 71(4):684-697.
42. Keuskamp DH, et al. (2011) Blue-light-mediated shade avoidance requires combined auxin and brassinosteroid action in Arabidopsis seedlings. Plant J 67(2):208-217.
43. Kant S, Bi YM, Zhu T, Rothstein SJ (2009) SAUR39, a small auxin-up RNA gene, acts as a negative regulator of auxin synthesis and transport in rice. Plant Physiol 151(2):691-701.
44. Qi J, et al. (2008) Mutation of the rice Narrow leaf1 gene, which encodes a novel protein, affects vein patterning and polar auxin transport. Plant Physiol 147(4):1947-1959.
45. Takai T, et al. (2013) A natural variant of NAL1, selected in high-yield rice breeding programs, pleiotropically increases photosynthesis rate. Sci Rep 3:2149.
46. Fujita D, et al. (2013) NAL1 allele from a rice landrace greatly increases yield in modern indica cultivars. Proc Natl Acad Sci USA 110(51):20431-20436.
47. Zhang GH, et al. (2014) LSCHL4 from Japonica Cultivar, which is allelic to NAL1, increases yield of indica super rice 93-11. Mol Plant 7(8):1350-1364.
48. Vanneste S, Friml J (2009) Auxin: A trigger for change in plant development. Cell 136(6):1005-1016.
49. Petrásek J, Friml J (2009) Auxin transport routes in plant development. Development 136(16):2675-2688.
50. Nick P, Han MJ, An G (2009) Auxin stimulates its own transport by shaping actin filaments. Plant Physiol 151(1):155-167.
51. Benjamins R, Scheres B (2008) Auxin: The looping star in plant development. Annu Rev Plant Biol 59:443-465.
52. Geldner N, et al. (2003) The Arabidopsis GNOM ARF-GEF mediates endosomal recycling, auxin transport, and auxin-dependent plant growth. Cell 112(2):219-230.
53. Friml J, et al. (2004) A PINOID-dependent binary switch in apical-basal PIN polar targeting directs auxin efflux. Science 306(5697):862-865.
54. Gil P, et al. (2001) BIG: A calossin-like protein required for polar auxin transport in Arabidopsis. Genes Dev 15(15):1985-1997.
55. Xu M, Zhu L, Shou H, Wu P (2005) A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice. Plant Cell Physiol 46(10):1674-1681.
56. Ma Y, et al. (2009) Molecular analysis of rice plants harboring a multi-functional T-DNA tagging system. J Genet Genomics 36(5):267-276.