Burkholderia stagnalis sp. nov. and Burkholderia territorii sp. nov., two novel Burkholderia cepacia complex species from environmental and human sources

International Journal of Systematic and Evolutionary Microbiology

Volumn 65, Issue 7, 2015, Pages 2265-2271

  De Smet, Birgit ^a,b   Mayo, Mark ^c   Peeters, Charlotte ^b   Zlosnik, James E A ^d   Spilker, Theodore ^e   Hird, Trevor J ^d   Li Puma, John J ^e   Kidd, Timothy J ^f   Kaestli, Mirjam ^c   Ginther, Jennifer L ^g   Wagner, David M ^g   Keim, Paul ^g   Bell, Scott C ^f,h,i   Jacobs, Jan A ^a,j   Currie, Bart J ^c   Vandamme, Peter ^b  

^a INSTITUTE OF TROPICAL MEDICINE   (Belgium)

^b GHENT UNIVERSITY   (Belgium)

^c MENZIES SCHOOL OF HEALTH RESEARCH   (Australia)

^d UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^e UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

^f UNIVERSITY OF QUEENSLAND   (Australia)

^g NORTHERN ARIZONA UNIVERSITY   (United States)

^h THE PRINCE CHARLES HOSPITAL   (Australia)

ⁱ QIMR BERGHOFER MEDICAL RESEARCH INSTITUTE   (Australia)

^j UNIVERSITY OF LEUVEN   (Belgium)

more..

Author keywords

[No Author keywords available]

Indexed keywords

DNA BASE; FATTY ACID ESTER; MALTOSE; N ACETYLGLUCOSAMINE; RNA 16S; BACTERIAL DNA; FATTY ACID;

ARTICLE; BACTERIUM ISOLATE; BURKHOLDERIA CEPACIA COMPLEX; BURKHOLDERIA STAGNALIS; BURKHOLDERIA TERRITORII; DNA BASE COMPOSITION; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PRIORITY JOURNAL; RANDOM AMPLIFIED POLYMORPHIC DNA; RECA GENE; SEQUENCE ANALYSIS; TYPE STRAIN; AUSTRALIA; BACTERIAL GENE; BACTERIUM IDENTIFICATION; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; GENETICS; HUMAN; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; MULTILOCUS SEQUENCE TYPING; PHYLOGENY; SPUTUM;

BURKHOLDERIA; BURKHOLDERIA CEPACIA COMPLEX; BURKHOLDERIA PSEUDOMALLEI;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; BURKHOLDERIA CEPACIA COMPLEX; DNA, BACTERIAL; FATTY ACIDS; GENES, BACTERIAL; HUMANS; MOLECULAR SEQUENCE DATA; MULTILOCUS SEQUENCE TYPING; NORTHERN TERRITORY; PHYLOGENY; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SPUTUM; WATER MICROBIOLOGY;

EID: 84940173591     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.000251     Document Type: Article

References (24)

1. Coenye, T. & Vandamme, P. (2003). Diversity and significance of Burkholderia species occupying diverse ecological niches. Environ Microbiol 5, 719-729.
2. Coenye, T., Vandamme, P., Govan, J. R. & LiPuma, J. J. (2001). Taxonomy and identification of the Burkholderia cepacia complex. J Clin Microbiol 39, 3427-3436.
3. Currie, B. J., Ward, L. & Cheng, A. C. (2010). The epidemiology and clinical spectrum of melioidosis: 540 cases from the 20 year Darwin prospective study. PLoS Negl Trop Dis 4, e900.
4. Edgar, R. C. (2004). MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5, 113.
5. Henry, D. A., Mahenthiralingam, E., Vandamme, P., Coenye, T. & Speert, D. P. (2001). Phenotypic methods for determining genomovar status of the Burkholderia cepacia complex. J Clin Microbiol 39, 1073-1078.
6. Jolley, K. A. & Maiden, M. C. (2010). BIGSdb: Scalable analysis of bacterial genome variation at the population level. BMC Bioinformatics 11, 595.
7. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
8. Kaestli, M., Schmid, M., Mayo, M., Rothballer, M., Harrington, G., Richardson, L., Hill, A., Hill, J., Tuanyok, A. & other authors (2012). Out of the ground: aerial and exotic habitats of the melioidosis bacterium Burkholderia pseudomallei in grasses in Australia. Environ Microbiol 14, 2058-2070.
9. Kim, O. S., Cho, Y. J., Lee, K., Yoon, S. H., Kim, M., Na, H., Park, S. C., Jeon, Y. S., Lee, J. H. & other authors (2012). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
10. Librado, P. & Rozas, J. (2009). DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25, 1451-1452.
11. Mahenthiralingam, E., Campbell, M. E., Henry, D. A. & Speert, D. P. (1996). Epidemiology of Burkholderia cepacia infection in patients with cystic fibrosis: analysis by randomly amplified polymorphic DNA fingerprinting. J Clin Microbiol 34, 2914-2920.
12. Mayo, M., Kaesti, M., Harrington, G., Cheng, A. C., Ward, L., Karp, D., Jolly, P., Godoy, D., Spratt, B. G. & Currie, B. J. (2011). Burkholderia pseudomallei in unchlorinated domestic bore water, Tropical Northern Australia. Emerg Infect Dis 17, 1283-1285.
13. Mesbah, M. & Whitman, W. B. (1989). Measurement of deoxyguanosine/thymidine ratios in complex mixtures by highperformance liquid chromatography for determination of the mole percentage guanine + cytosine of DNA. J Chromatogr A 479, 297-306.
14. Peeters, C., Zlosnik, J. E., Spilker, T., Hird, T. J., LiPuma, J. J. & Vandamme, P. (2013). Burkholderia pseudomultivorans sp. nov., a novel Burkholderia cepacia complex species from human respiratory samples and the rhizosphere. Syst Appl Microbiol 36, 483-489.
15. Pitcher, D. G., Saunders, N. A. & Owen, R. J. (1989). Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett Appl Microbiol 8, 151-156.
16. Spilker, T., Baldwin, A., Bumford, A., Dowson, C. G., Mahenthiralingam, E. & LiPuma, J. J. (2009). Expanded multilocus sequence typing for Burkholderia species. J Clin Microbiol 47, 2607-2610.
17. Stead, D. E. (1992). Grouping of planth-pathogenic and some other Pseudomonas spp. by using cellular fatty-acid profiles. Int J Syst Bacteriol 42, 281-295.
18. Storms, V., Van Den Vreken, N., Coenye, T., Mahenthiralingam, E., LiPuma, J. J., Gillis, M., Vandamme, P. & Vandamme, P. (2004). Polyphasic characterisation of Burkholderia cepacia -like isolates leading to the emended description of Burkholderia pyrrocinia. Syst Appl Microbiol 27, 517-526.
19. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
20. Vandamme, P. & Dawyndt, P. (2011). Classification and identification of the Burkholderia cepacia complex: past, present and future. Syst Appl Microbiol 34, 87-95.
21. Vandamme, P. & Peeters, C. (2014). Time to revisit polyphasic taxonomy. Antonie van Leeuwenhoek 106, 57-65.
22. Vandamme, P., Vancanneyt, M., Pot, B., Mels, L., Hoste, B., Dewettinck, D., Vlaes, L., van den Borre, C., Higgins, R. & other authors (1992). Polyphasic taxonomic study of the emended genus Arcobacter with Arcobacter butzleri comb. nov. and Arcobacter skirrowii sp. nov., an aerotolerant bacterium isolated from veterinary specimens. Int J Syst Bacteriol 42, 344-356.
23. Vanlaere, E., Baldwin, A., Gevers, D., Henry, D., De Brandt, E., LiPuma, J. J., Mahenthiralingam, E., Speert, D. P., Dowson, C., Vandamme, P. & Taxon, K. (2009). Taxon K, a complex within the Burkholderia cepacia complex, comprises at least two novel species, Burkholderia contaminans sp. nov. and Burkholderia lata sp. nov. Int J Syst Evol Microbiol 59, 102-111.
24. Vonberg, R. P. & Gastmeier, P. (2007). Hospital-acquired infections related to contaminated substances. J Hosp Infect 65, 15-23.