A novel NAP member GhNAP is involved in leaf senescence in Gossypium hirsutum

Journal of Experimental Botany

Volumn 66, Issue 15, 2015, Pages 4669-4682

  Fan, Kai ^a   Bibi, Noreen ^a   Gan, Susheng ^b   Li, Feng ^a   Yuan, Shuna ^a   Ni, Mi ^a   Wang, Ming ^a   Shen, Hao ^a   Wang, Xuede ^a  

^a ZHEJIANG UNIVERSITY   (China)

^b Department of Obstetrics Gynecology   (United States)

Author keywords

Abscisic acid; GhNAP; Gossypium hirsutum; leaf senescence; NAP subfamily; transcription factor

Indexed keywords

ARABIDOPSIS; GOSSYPIUM HIRSUTUM;

ABSCISIC ACID; ARABIDOPSIS PROTEIN; NAP PROTEIN, ARABIDOPSIS; PLANT PROTEIN; TRANSCRIPTION FACTOR;

ARABIDOPSIS; GENE EXPRESSION REGULATION; GENETICS; GOSSYPIUM; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MUTATION; PLANT LEAF; TRANSGENIC PLANT;

ABSCISIC ACID; ARABIDOPSIS; ARABIDOPSIS PROTEINS; GENE EXPRESSION REGULATION, PLANT; GOSSYPIUM; MUTATION; PLANT LEAVES; PLANT PROTEINS; PLANTS, GENETICALLY MODIFIED; TRANSCRIPTION FACTORS;

EID: 84940105364     PISSN: 00220957     EISSN: 14602431     Source Type: Journal    
DOI: 10.1093/jxb/erv240     Document Type: Article

References (57)

1. Abe H, Yamaguchi-Shinozaki K, Urao T, Iwasaki T, Hosokawa D, Shinozaki K. 1997. Role of Arabidopsis MYC and MYB homologs in drought-and abscisic acid-regulated gene expression. The Plant Cell 9, 1859-1868.
2. Aida M, Ishida T, Fukaki H, Fujisawa H, Tasaka M. 1997. Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant. The Plant Cell 9, 841-857.
3. Bailey TL, Williams N, Misleh C, Li WW. 2006. MEME: discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Research 34, W369-W373.
4. Buchanan-Wollaston V, Earl S, Harrison E, Mathas E, Navabpour S, Page T, Pink D. 2003. The molecular analysis of leaf senescence-a genomics approach. Plant Biotechnology Journal 1, 3-22.
5. Buchanan-Wollaston V, Page T, Harrison E, et al. 2005. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvationinduced senescence in Arabidopsis. The Plant Journal 42, 567-585.
6. Chen X, Wang Y, Lv B, Li J, Luo L, Lu S, Zhang X, Ma H, Ming F. 2014. The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway. Plant and Cell Physiology 55, 604-619.
7. Chen Y, Qiu K, Kuai B, Ding Y. 2011. Identification of a NAP-like transcription factor BeNAC1 regulating leaf senescence in bamboo (Bambusa emeiensis 'Viridiflavus'). Physiologia Plantarum 142, 361-371.
8. Chen Z, Wu F, Wang X, Zhang G. 2005. Heterosis in CMS hybrids of cotton for photosynthetic and chlorophyll fluorescence parameters. Euphytica 144, 353-361.
9. Clough SJ, Bent AF. 1998. Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. The Plant Journal 16, 735-743.
10. Crooks GE, Hon G, Chandonia J, Brenner SE. 2004. WebLogo: a sequence logo generator. Genome Research 14, 1188-1190.
11. de Oliveira TM, Cidade LC, Gesteira AS, Coelho Filho MA, Soares Filho WS, Costa MG. 2011. Analysis of the NAC transcription factor gene family in citrus reveals a novel member involved in multiple abiotic stress responses. Tree Genetics and Genomes 7, 1123-1134.
12. de Zélicourt A, Diet A, Marion J, Laffont C, Ariel F, Moison M, Zahaf O, Crespi M, Gruber V, Frugier F. 2012. Dual involvement of a Medicago truncatula NAC transcription factor in root abiotic stress response and symbiotic nodule senescence. The Plant Journal 70, 220-230.
13. Dong H, Li W, Tang W, Li Z, Zhang D, Niu Y. 2006. Yield, quality and leaf senescence of cotton grown at varying planting dates and plant densities in the Yellow River Valley of China. Field Crops Research 98, 106-115.
14. Duval M, Hsieh T, Kim SY, Thomas TL. 2002. Molecular characterization of AtNAM: a member of the Arabidopsis NAC domain superfamily. Plant Molecular Biology 50, 237-248.
15. Fan K, Wang M, Miao Y, Ni M, Bibi N, Yuan S, Li F, Wang X. 2014. Molecular evolution and expansion analysis of the NAC transcription factor in Zea mays. PLoS One 9, e111837.
16. Feibo W, Lianghuan W, Fuhua X. 1998. Chlorophyll meter to predict nitrogen sidedress requirements for short-season cotton (Gossypium hirsutum L.). Field Crops Research 56, 309-314.
17. Fujita M, Fujita Y, Maruyama K, Seki M, Hiratsu K, Ohme-Takagi M, Tran LSP, Yamaguchi-Shinozaki K, Shinozaki K. 2004. A dehydrationinduced NAC protein, RD26, is involved in a novel ABA-dependent stresssignaling pathway. The Plant Journal 39, 863-876.
18. Fukao T, Yeung E, Bailey-Serres J. 2012. The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice. Plant Physiology 160, 1795-1807.
19. Gan S, ed. 2007. Annual Plant Reviews Senescence Processes in Plants. Chichester, UK: Wiley Volume 26. Senescence processes in plants. Chichester, UK: Wiley.
20. Guo Y, Cai Z, Gan S. 2004. Transcriptome of Arabidopsis leaf senescence. Plant, Cell and Environment 27, 521-549.
21. Guo Y, Gan S. 2006. AtNAP, a NAC family transcription factor, has an important role in leaf senescence. The Plant Journal 46, 601-612.
22. Guo Y, Gan S. 2012. Convergence and divergence in gene expression profiles induced by leaf senescence and 27 senescence-promoting hormonal, pathological and environmental stress treatments. Plant, Cell and Environment 35, 644-655.
23. Hua S, Yuan S, Shamsi IH, Zhao X, Zhang X, Liu Y, Wen G, Wang X, Zhang H. 2009. A comparison of three isolines of cotton differing in fiber color for yield, quality, and photosynthesis. Crop Science 49, 983-989.
24. Huang G, Li W, Zhou W, Zhang J, Li D, Gong S, Li X. 2013. Seven cotton genes encoding putative NAC domain proteins are preferentially expressed in roots and in responses to abiotic stress during root development. Plant Growth Regulation 71, 101-112.
25. Huelsenbeck JP, F Ronquist. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754-755.
26. Kalivas A, Pasentsis K, Argiriou A, Tsaftaris AS. 2010. Isolation, characterization, and expression analysis of an NAP-like cDNA from Crocus (Crocus sativus L.). Plant Molecular Biology Reporter 28, 654-663.
27. Kim HJ, Triplett BA. 2001. Cotton fiber growth in planta and in vitro. Models for plant cell elongation and cell wall biogenesis. Plant Physiology 127, 1361-1366.
28. Kong X, Luo Z, Dong H, Eneji AE, Li W, Lu H. 2013. Gene expression profiles deciphering leaf senescence variation between early-and latesenescence cotton lines. PLoS One 8, e69847.
29. Lanoue A, Burlat V, Henkes GJ, Koch I, Schurr U, Röse US. 2010. De novo biosynthesis of defense root exudates in response to Fusarium attack in barley. New Phytologist 185, 577-588.
30. Liang C, Wang Y, Zhu Y, Tang J, Hu B, Liu L, Ou S, Wu H, Sun X, Chu J. 2014. OsNAP connects abscisic acid and leaf senescence by fine-tuning abscisic acid biosynthesis and directly targeting senescenceassociated genes in rice. Proceedings of the National Academy of Sciences, USA 111, 10013-10018.
31. Lim PO, Kim HJ, Nam HG. 2007. Leaf senescence. Annual Reviews in Plant Biology 58, 115-136.
32. Lin JF, Wu SH. 2004. Molecular events in senescing Arabidopsis leaves. The Plant Journal 39, 612-628.
33. Luo Z, Wu R. 1988. A simple method for the transformation of rice via the pollen-tube pathway. Plant Molecular Biology Reporter 6, 165-174.
34. Meng C, Cai C, Zhang T, Guo W. 2009. Characterization of six novel NAC genes and their responses to abiotic stresses in Gossypium hirsutum L. Plant Science 176, 352-359.
35. Meng Q, Zhang C, Gai J, Yu D. 2007. Molecular cloning, sequence characterization and tissue-specific expression of six NAC-like genes in soybean (Glycine max(L.) Merr. ). Journal of Plant Physiology 164, 1002-1012.
36. Olsen AN, Ernst HA, Leggio LL, Skriver K. 2005. NAC transcription factors: structurally distinct, functionally diverse. Trends in Plant Science 10, 79-87.
37. Ooka H, Satoh K, Doi K, Nagata T, Otomo Y, Murakami K, Matsubara K, Osato N, Kawai J, Carninci P. 2003. Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana. DNA Research 10, 239-247.
38. Peng H, Cheng H, Chen C, Yu X, Yang J, Gao W, Shi Q, Zhang H, Li J, Ma H. 2009. A NAC transcription factor gene of Chickpea (Cicer arietinum), CarNAC3, is involved in drought stress response and various developmental processes. Journal of Plant Physiology 166, 1934-1945.
39. Pinheiro GL, Marques CS, Costa MD, Reis PA, Alves MS, Carvalho CM, Fietto LG, Fontes EP. 2009. Complete inventory of soybean NAC transcription factors: sequence conservation and expression analysis uncover their distinct roles in stress response. Gene 444, 10-23.
40. Sablowski RW, Meyerowitz EM. 1998. A homolog of NO APICAL MERISTEM is an immediate target of the floral homeotic genes APETALA3/PISTILLATA. Cell 92, 93-103.
41. Schmittgen TD, Livak KJ. 2008. Analyzing real-time PCR data by the comparative CT method. Nature Protocols 3, 1101-1108.
42. Shah ST, Pang C, Fan S, Song M, Arain S, Yu S. 2013. Isolation and expression profiling of GhNAC transcription factor genes in cotton (Gossypium hirsutum L.) during leaf senescence and in response to stresses. Gene 531, 220-234.
43. Shah ST, Pang C, Hussain A, Fan S, Song M, Zamir R, Yu S. 2014. Molecular cloning and functional analysis of NAC family genes associated with leaf senescence and stresses in Gossypium hirsutum L. Plant Cell, Tissue and Organ Culture 117, 167-186.
44. Shang H, Li W, Zou C, Yuan Y. 2013. Analyses of the NAC transcription factor gene family in Gossypium raimondii Ulbr. : chromosomal location, structure, phylogeny, and expression patterns. Journal of Integrative Plant Biology 55, 663-676.
45. Sun X, Gong SY, Nie XY, Li Y, Li W, Huang GQ, Li XB. 2015. A R2R3-MYB transcription factor that is specifically expressed in cotton (Gossypium hirsutum) fibers affects secondary cell wall biosynthesis and deposition in transgenic Arabidopsis. Physiologia Plantarum 154, 420-432.
46. Thomas H, Stoddart JL. 1980. Leaf senescence. Annual Review of Plant Physiology 31, 83-111.
47. Tran LP, Nakashima K, Sakuma Y, Simpson SD, Fujita Y, Maruyama K, Fujita M, Seki M, Shinozaki K, Yamaguchi-Shinozaki K. 2004. Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter. The Plant Cell 16, 2481-2498.
48. Uauy C, Distelfeld A, Fahima T, Blechl A, Dubcovsky J. 2006. A NAC gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science 314, 1298-1301.
49. Walford SA, Wu Y, Llewellyn DJ, Dennis ES. 2011. GhMYB25-like: a key factor in early cotton fibre development. The Plant Journal 65, 785-797.
50. Wang F, Chen F, Cai Y, Zhang G, Wu F. 2011. Modulation of exogenous glutathione in ultrastructure and photosynthetic performance against Cd stress in the two barley genotypes differing in Cd tolerance. Biological Trace Element Research 144, 1275-1288.
51. Woo HR, Chung KM, Park J, Oh SA, Ahn T, Hong SH, Jang SK, Nam HG. 2001. ORE9, an F-box protein that regulates leaf senescence in Arabidopsis. The Plant Cell 13, 1779-1790.
52. Zhao Y, Zhou Y, Jiang H, Li X, Gan D, Peng X, Zhu S, Cheng B. 2011. Systematic analysis of sequences and expression patterns of droughtresponsive members of the HD-Zip gene family in maize. PloS One 6, e28488
53. Zhang D. 2014. Abscisic acid: metabolism, transport and signaling. Berlin: Springer.
54. Zhang H, Jin J, Tang L, Zhao Y, Gu X, Gao G, Luo J. 2011. PlantTFDB 2. 0: update and improvement of the comprehensive plant transcription factor database. Nucleic Acids Research 39, D1114-D1117.
55. Zhang K, Gan S. 2012. An abscisic acid-AtNAP transcription factor-SAG113 protein phosphatase 2C regulatory chain for controlling dehydration in senescing Arabidopsis leaves. Plant Physiology 158, 961-969.
56. Zhong R, Demura T, Ye Z. 2006. SND1, a NAC domain transcription factor, is a key regulator of secondary wall synthesis in fibers of Arabidopsis. The Plant Cell 18, 3158-3170.
57. Zhong R, Richardson EA, Ye Z. 2007. The MYB46 transcription factor is a direct target of SND1 and regulates secondary wall biosynthesis in Arabidopsis. The Plant Cell 19, 2776-2792.