A plasmonic nanorod that walks on DNA origami

Nature Communications

Volumn 6, Issue , 2015, Pages

  Zhou, Chao ^a   Duan, Xiaoyang ^a   Liu, Na ^a  

^a MAX PLANCK INSTITUTE FOR INTELLIGENT SYSTEMS   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; NANOROD; PLASMONIC NANOROD; UNCLASSIFIED DRUG; GOLD; NANOTUBE;

ANISOTROPY; CELLS AND CELL COMPONENTS; DIFFRACTION; DNA; GENETIC ENGINEERING; NANOPARTICLE; NANOTECHNOLOGY; ONE-DIMENSIONAL MODELING; TRANSPORT PROCESS; TWO-DIMENSIONAL MODELING; WALKING;

ARTICLE; BINDING SITE; CIRCULAR DICHROISM; CONFORMATIONAL TRANSITION; DIFFRACTION; DNA HYBRIDIZATION; DNA ORIGAMI; DNA STRAND; DNA STRUCTURE; GEOMETRY; OPTICAL RESOLUTION; SURFACE PROPERTY; TRANSMISSION ELECTRON MICROSCOPY; MOVEMENT (PHYSIOLOGY);

CIRCULAR DICHROISM; DNA; GOLD; MICROSCOPY, ELECTRON, TRANSMISSION; MOVEMENT; NANOTUBES;

EID: 84940056354     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms9102     Document Type: Article

References (36)

1. Sherman, W. B., Seeman, N. C. A precisely controlled DNA biped walking device. Nano Lett. 4, 1203-1207 (2004).
2. Shin, J. S., Pierce, N. A. A synthetic DNA walker for molecular transport. J. Am. Chem. Soc. 126, 10834-10835 (2004).
3. Yin, P., Yan, H., Daniell, X. G., Turberfield, A. J., Reif, J. H. A unidirectional DNA walker that moves autonomously along a track. Angew. Chem. Int. Ed. Engl. 43, 4906-4911 (2004).
4. Tian, Y., He, Y., Chen, Y., Yin, P., Mao, C. D. A DNAzyme that walks processively and autonomously along a one-dimensional track. Angew. Chem. Int. Ed. Engl. 44, 4355-4358 (2005).
5. Yin, P., Choi, H. M. T., Calvert, C. R., Pierce, N. A. Programming biomolecular self-assembly pathways. Nature 451, 318-322 (2008).
6. Omabegho, T., Sha, R., Seeman, N. C. A bipedal DNA Brownian motor with coordinated legs. Science 324, 67-71 (2009).
7. Gu, H. Z., Chao, J., Xiao, S. J., Seeman, N. C. A proximity-based programmable DNA nanoscale assembly line. Nature 465, 202-205 (2010).
8. Lund, K. et al. Molecular robots guided by prescriptive landscapes. Nature 465, 206-210 (2010).
9. Wang, Z. G., Elbaz, J., Willner, I. DNA machines: Bipedal walker and stepper. Nano Lett. 11, 304-309 (2011).
10. Wickham, S. F. J. et al. A DNA-based molecular motor that can navigate a network of tracks. Nat. Nanotechnol. 7, 169-173 (2012).
11. Cha, T. G. et al. A synthetic DNA motor that transports nanoparticles along carbon nanotubes. Nat. Nanotechnol. 9, 39-43 (2014).
12. Von Delius, M., Geertsema, E. M., Leigh, D. A. A synthetic small molecule that can walk down a track. Nat. Chem. 2, 96-101 (2010).
13. Kay, E. R., Leigh, D. A., Zerbetto, F. Synthetic molecular motors and mechanical machines. Angew. Chem. Int. Ed. Engl. 46, 72-191 (2007).
14. Liu, N., Hentschel, M., Weiss, T., Alivisatos, A. P., Giessen, H. Threedimensional plasmon rulers. Science 332, 1407-1410 (2011).
15. Zhang, S. et al. Photoinduced handedness switching in terahertz chiral metamolecules. Nat. Commun. 3, 942 (2012).
16. Kuzyk, A. et al. DNA-based self-assembly of chiral plasmonic nanostructures with tailored optical response. Nature 483, 311-314 (2012).
17. Lan, X. et al. Bifacial DNA origami-directed discrete, three-dimensional, anisotropic plasmonic nanoarchitectures with tailored optical chirality. J. Am. Chem. Soc. 135, 11441-11444 (2013).
18. Kuzyk, A. et al. Reconfigurable 3d plasmonic metamolecules. Nat. Mater. 13, 862-866 (2014).
19. Pal, S. et al. DNA directed self-assembly of anisotroic plasmonic nanostructures. J. Am. Chem. Soc. 133, 17606-17609 (2011).
20. Rothemund, P. W. K. Folding DNA to create nanoscale shapes and patterns. Nature 440, 297-302 (2006).
21. Douglas, S. M. et al. Self-assembly of DNA into nanoscale three-dimensional shapes. Nature 459, 414-418 (2009).
22. Auguie, B., Alonso-Gomez, J. L., Guerrero-Martinez, A., Liz-Marzan, L. M. Fingers crossed: Optical activity of a chiral dimer of plasmonic nanorods. J. Phys. Chem. Lett. 2, 846-851 (2011).
23. Yin, X. H., Schaferling, M., Metzger, B., Giessen, H. Interpreting chiral nanophotonic spectra: the plasmonic born-kuhn model. Nano Lett. 13, 6238-6243 (2013).
24. Ma, W. et al. Chiral plasmonics of self-assembled nanorod dimers. Sci. Rep. 3, 1934 (2013).
25. Fan, Z. Y., Govorov, A. O. Plasmonic circular dichroism of chiral metal nanoparticle assemblies. Nano Lett. 10, 2580-2587 (2010).
26. Lal, S., Link, S., Halas, N. J. Nano-optics from sensing to waveguiding. Nat. Photonics 1, 641-648 (2007).
27. Halas, N. J., Lal, S., Chang, W. S., Link, S., Nordlander, P. Plasmons in strongly coupled metallic nanostructures. Chem. Rev. 111, 3913-3961 (2011).
28. Ou, J. Y., Plum, E., Zhang, J. F., Zheludev, N. I. An electromechanically reconfigurable plasmonic metamaterial operating in the near-infrared. Nat. Nanotechnol. 8, 252-255 (2013).
29. Han, D. R. et al. DNA origami with complex curvatures in three-dimensional space. Science 332, 342-346 (2011).
30. Iinuma, R. et al. Polyhedra self-assembled from DNA tripods and characterized with 3d DNA-paint. Science 344, 65-69 (2014).
31. Kuhn, S., Hakanson, U., Rogobete, L., Sandoghdar, V. Enhancement of singlemolecule fluorescence using a gold nanoparticle as an optical nanoantenna. Phys. Rev. Lett. 97, 017402 (2006).
32. Kinkhabwala, A. et al. Large single-molecule fluorescence enhancements produced by a bowtie nanoantenna. Nat. Photonics 3, 654-657 (2009).
33. Samanta, A., Zhou, Y., Zou, S., Yan, H., Liu, Y. Fluorescence quenching of quantum dots by gold nanoparticles: a potential long range spectroscopic ruler. Nano Lett. 14, 5052-5057 (2014).
34. Castro, C. E. et al. A primer to scaffolded DNA origami. Nat. Methods 8, 221-229 (2011).
35. Kim, D. N., Kilchherr, F., Dietz, H., Bathe, M. Quantitative prediction of 3d solution shape and flexibility of nucleic acid nanostructures. Nucleic Acids Res. 40, 2862-2868 (2012).
36. Johnson, P. B., Christy, R. W. Optical constants of the noble metals. Phys. Rev. B 6, 4370-4379 (1972).