The MYB Transcription Factor Family Genes in Sugarcane (Saccharum sp.)

Plant Molecular Biology Reporter

Volumn 33, Issue 3, 2015, Pages 512-531

  Geethalakshmi, Sundararaman ^a   Barathkumar, Sadasivam ^a   Prabu, Gajjeraman ^a  

^a KARPAGAM UNIVERSITY   (India)

Author keywords

Drought; Expression; MYB; Stress; Sugarcane; Transcription factor

Indexed keywords

EID: 84939898183     PISSN: 07359640     EISSN: 15729818     Source Type: Journal    
DOI: 10.1007/s11105-014-0768-3     Document Type: Article

References (31)

1. Ambawat S, Sharma P, Yadav NR, Yadav RC (2013) MYB transcription factor genes as regulators for plant responses: an overview. Physiol Mol Biol Plant 19:307–321
2. Arce AL, Cabello JV, Chan RL (2008) Patents on plant transcription factors. Recent Pat Biotechnol 2:209–217
3. Bradford MM (1976) A rapid and sensitive method for the quantification of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72:248–254
4. Cai H, Tian S, Dong H (2012) Large scale in silico identification of MYB family genes from wheat expressed sequence tags. Mol Biotechnol 52:184–192
5. Casu RE, Dimmock CM, Chapman SC, Grof PL, McIntyre CL, Bonnett GD, Manners JM (2004) Identification of differentially expressed transcripts from maturing stem of sugarcane by in silico analysis of stem expressed sequence tags and gene expression profiling. Plant Mol Biol 54:503–517
6. Cominelli E, Tonelli C (2010) Transgenic crops coping with water scarcity. New Biotech 27:473–477
7. Conesa A, Gotz S (2008) Blast2GO: a comprehensive suite for functional analysis in plant genomics. Int J Plant Genomics 1–12
8. D'Hont A, Grivet L, Feldmann P, Glaszmann JC, Rao S, Berding N (1996) Characterisation of the double genome structure of modern sugarcane cultivars (Saccharum spp.) by molecular cytogenetics. Mol Gen Genet 250:405–413
9. Du H, Feng BR, Yang SS, Huang YB, Tang YX (2012) The R2R3-MYB transcription factor gene family in maize. PLoS ONE 7:1–12
10. Du H, Wang YB, Xie Y, Liang Z, Jiang SJ, Zhang SS, Huang YB, Tang YX (2013) Genome-wide identification and evolutionary and expression analyses of MYB-related genes in land plants. DNA Res 1–12
11. Dubos C, Stracke R, Grotewold E, Weisshaar B, Martin C, Lepiniec L (2010) MYB transcription factors in Arabidopsis. Trends Plant Sci 15:573–581
12. Grotewold E (2008) Transcription factors for predictive plant metabolic engineering: are we there yet? Curr Opin Biotechnol 19:138–144
13. Gupta V, Raghuvanshi S, Gupta A, Saini N, Gaur A, Khan MS, Gupta RS, Singh J, Duttamajumder SK, Srivastava S, Suman A, Khurana JP, Kapur R, Tyagi AK (2010) The water-deficit stress- and red-rot-related genes in sugarcane. Funct Integr Genomics 10:207–214
14. Hotta CT, Lembke CG, Domingues DS, Ochoa EA, Cruz MQ, Melotto-Passarin DM, Marconi TG, Santos MO, Mollinari M, Margarido RA, Crivellari AC, Santos WD, Amanda P, Hoshino AA, Carrer H, Anete P, Garcia AF, Buckeridge MS, Menossi M, Van Sluys MA, Glaucia M (2010) The biotechnology roadmap for sugarcane improvement. Tropical Plant Biol 3:75–87
15. Ito M (2005) Conservation and diversification of three-repeat MYB transcription factors in plants. J Plant Res 118:61–69
16. Jefferson RA, Kavanagh TA, Bevan MW (1987) GUS fusions: β-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J 13:3901–3907
17. Jin H, Martin C (1999) Multifunctionality and diversity within the plant MYB-gene family. Plant Mol Biol 41:577–585
18. Jyothishwaran G, Kotresha D, Selvaraj T, Sridehikan SM, Rajvanshi PK, Jayabaskaran C (2007) A modified freeze–thaw method for efficient transformation of Agrobacterium tumefaciens. Curr Sci 93:770–772
19. Katiyar A, Smita S, Lenka SK, Rajwanshi R, Chinnusamy V, Bansal KC (2012) Genome-wide classification and expression analysis of MYB transcription factor families in rice and Arabidopsis. BMC Genomics 13:544
20. Kyte J, Doolittle RF (1982) A simple method for displaying the hydropathic character of a protein. J Mol Biol 157:105–132
21. Manners JM, Casu RE (2011) Transcriptome analysis and functional genomics of sugarcane. Tropical Plant Biol 4:9–21
22. Menossi M, Silva-Filho MC, Vincentz M, Van-Sluys MA, Souza GM (2008) Sugarcane functional genomics: gene discovery for agronomic trait development. Int J Plant Genomics 2008:1–11
23. Prabu GR, Prasad DT (2011) Functional characterization of sugarcane MYB transcription factor gene promoter (PScMYBAS1) in response to abiotic stresses and hormones. Plant Cell Rep 31:661–669
24. Prabu GR, Kawar PG, Pagariya MC, Prasad DT (2010) Identification of water deficit stress upregulated genes in sugarcane. Plant Mol Biol Rep 29:291–304
25. Prouse MB, Campbell MM (2012) The interaction between MYB proteins and their target DNA binding sites. Biochim Biophys Acta 1819:67–77
26. Rao AQ, Bakhsh A, Kiani S, Shahzad K, Shahid AA, Husnain T, Riazuddin S (2009) The myth of plant transformation. Biotechol Adv 27:753–763
27. Soares-Cavalcanti NM, Wanderley-Nogueira AC, Belarmino LC, Barros PS, Benko-Iseppon AM (2009) Comparative in silico evaluation of MYB transcription factors in eucalyptus, sugarcane and rice transcriptomes. Lect Notes Comp Sci 5488:44–55
28. Stracke R, Werber M, Weisshaar B (2001) The R2R3-MYB gene family in Arabidopsis thaliana. Current Opin Plant Biol 4:447–456
29. Turkan I, Bor M, Zdemir F, Koca H (2005) Differential responses of lipid peroxidation and antioxidants in the leaves of drought-tolerant P. acutifolius and drought-sensitive P. vulgaris subjected to polyethylene glycol mediated water stress. Plant Sci 168:223–231
30. Yang Y, Li R, Qi M (2000) In vivo analysis of plant promoters and transcription factors by agroinfiltration of tobacco leaves. Plant J 22:543–551
31. Yanhui C, Xiaoyuan Y, Kun H, Meihua L, Jigang L, Zhaofeng G, Zhiqiang L, Yunfei Z, Xiaoxiao W, Xiaoming Q, Yunping S, Li Z, Xiaohui D, Jingchu L, Xing-Wang D, Zhang liang C, Hongya G, Li-Jia Q (2006) The MYB transcription factor super family of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family. Plant Mol Biol 60:107–124