Fixed target matrix for femtosecond time-resolved and in situ serial micro-crystallography

Structural Dynamics

Volumn 2, Issue 5, 2015, Pages

  Mueller, C ^a   Marx, A ^b   Epp, S W ^b   Zhong, Y ^b   Kuo, A ^c   Balo, A R ^c   Soman, J ^d   Schotte, F ^e   Lemke, H T ^f   Owen, R L ^g   Pai, E F ^c,h   Pearson, A R ^i,j   Olson, J S ^d   Anfinrud, P A ^e   Ernst, O P ^c   Miller, R J Dwayne ^a,b,i  

^a UNIVERSITY OF TORONTO   (Canada)

^b MAX PLANCK INSTITUTE FOR THE STRUCTURE AND DYNAMICS OF MATTER   (Germany)

^c UNIVERSITY OF TORONTO   (Canada)

^d RICE UNIVERSITY   (United States)

^e NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES   (United States)

^f SLAC NATIONAL ACCELERATOR LABORATORY   (United States)

^g DIAMOND LIGHT SOURCE LTD   (United Kingdom)

^h UNIVERSITY HEALTH NETWORK   (Canada)

ⁱ UNIVERSITY OF HAMBURG   (Germany)

^j UNIVERSITY OF LEEDS   (United Kingdom)

more..

Author keywords

[No Author keywords available]

Indexed keywords

CRYSTALS; DIFFRACTION; ELECTRONS; FREE ELECTRON LASERS; SIGNAL TO NOISE RATIO; SYNCHROTRON RADIATION;

DIFFERENTIAL DETECTION; DIFFRACTION DATA; DIFFRACTION INTENSITY; FEMTOSECOND TIME-RESOLVED; LINAC COHERENT LIGHT SOURCE; SERIAL CRYSTALLOGRAPHY; SYNCHROTRON BEAMLINES; X-RAY FREE ELECTRON LASERS;

X RAY CRYSTALLOGRAPHY;

EID: 84939601631     PISSN: None     EISSN: 23297778     Source Type: Journal    
DOI: 10.1063/1.4928706     Document Type: Article

References (34)

1. R. J. D. Miller, "Energetics and dynamics of deterministic protein motion," Acc. Chem. Res. 27, 145-150 (1994).
2. R. J. D. Miller, "Mapping atomic motions with ultrabright electrons: The chemists' Gedanken experiment enters the lab frame," Annu. Rev. Phys. Chem. 65, 583-604 (2014).
3. R. Neutze, R. Wouts, D. van der Spoel, E. Weckert, and J. Hajdu, "Potential for biomolecular imaging with femtosecond x-ray pulses," Nature 406, 752-757 (2000).
4. A. Barty, J. Küpper, and H. N. Chapman, "Molecular imaging using x-ray free-electron lasers," Annu. Rev. Phys. Chem. 4, 415-435 (2013).
5. L. Young, E.P. Kanter, B. Krässig, Y. Li, A.M. March et al., "Femtosecond electronic response of atoms to ultra-intense x-rays," Nature 466, 56-61 (2010).
6. H. N. Chapman, P. Fromme, A. Barty, T.A. White, R.A. Kirian et al., "Femtosecond x-ray protein nanocrystallography," Nature 470, 73-77 (2011).
7. V. Marx, "Structural biology: 'Seeing' crystals the XFEL way," Nat. Methods 11, 903-908 (2014).
8. M. Cammarata, M. Levantino, F. Schotte, P.A. Anfinrud, F. Ewald et al., "Tracking the structural dynamics of proteins in solution using time-resolved wide-angle x-ray scattering," Nat. Methods 5, 881-887 (2008).
9. F. Schotte, M. Lim, T.A. Jackson, A.V. Smirnov, J. Soman et al., "Watching a protein as it functions with 150-ps timeresolved x-ray crystallography," Science 300, 1944-1947 (2003).
10. S. Boutet, L. Lomb, G.J. Williams, T.R. M. Barends, A. Aquila et al., "High-resolution protein structure determination by serial femtosecond crystallography," Science 337, 362-365 (2012).
11. J. Tenboer, S. Basu, N. Zatsepin, K. Pande, D. Milathianaki et al., "Time-resolved serial crystallography captures highresolution intermediates of photoactive yellow protein," Science 346, 1242 (2014).
12. F. Schotte, H. Sun, V.R. I. Kaila, H. Kamikubo, N. Dashdorj et al., "Watching a signaling protein function in real time via 100-ps time-resolved Laue crystallography," Proc. Natl. Acad. Sci. U. S. A. 109, 19256-19261 (2012).
13. C. Mueller, Ph. D thesis, University of Toronto, 2014.
14. A. Zarrine-Afsar, T.R. M. Barends, C. Müller, M.R. Fuchs, L. Lomb et al., "Crystallography on a chip," Acta Crystallogr., Sect. D: Biol. Crystallogr. 68, 321-323 (2012).
15. A. Le Maire, M. Gelin, S. Pochet, F. Hoh, M. Pirocchi et al., "In-plate protein crystallization, in situ ligand soaking and x-ray diffraction," Acta Crystallogr., Sect. D: Biol. Crystallogr. 67, 747-755 (2011).
16. G. Winter and K. E. McAuley, "Automated data collection for macromolecular crystallography," Methods 55, 81-93 (2011).
17. J. Foadi, P. Aller, Y. Alguel, A. Cameron, D. Axford et al., "Clustering procedures for the optimal selection of data sets from multiple crystals in macromolecular crystallography," Acta Crystallogr., Sect. D: Biol. Crystallogr. 69, 1617-1632 (2013).
18. P. Coppens, M. Pitak, M. Gembicky, M. Messerschmidt, S. Scheins et al., "The RATIO method for time-resolved Laue crystallography," J. Synchrotron Radiat. 16, 226-230 (2009).
19. W. Brehm and K. Diederichs, "Breaking the indexing ambiguity in serial crystallography," Acta Crystallogr., Sect. D: Biol. Crystallogr. 70, 101-109 (2014).
20. T. E. Carver, R.E. Brantley, E.W. Singleton, R.M. Arduini, M.L. Quillin et al., "A novel site-directed mutant of myoglobin with an unusually high O2 affinity and low autooxidation rate," J. Biol. Chem. 267, 14443-14450 (1992).
21. D. P. DePonte, U. Weierstall, K. Schmidt, J. Warner, D. Starodub et al., "Gas dynamic virtual nozzle for generation of microscopic droplet streams," J. Phys. D: Appl. Phys. 41, 195505 (2008).
22. C. Kupitz, S. Basu, I. Grotjohann, R. Fromme, N.A. Zatsepin et al., "Serial time-resolved crystallography of photosystem II using a femtosecond x-ray laser," Nature 513, 261-265 (2014).
23. J. Hattne, N. Echols, R. Tran, J. Kern, R.J. Gildea et al., "Accurate macromolecular structures using minimal measurements from x-ray free-electron lasers," Nat. Methods 11, 545-548 (2014).
24. B. A. Springer and S. G. Sligar, "High-level expression of sperm whale myoglobin in Escherichia coli," Proc. Natl. Acad. Sci. U. S. A. 84, 8961-8965 (1987).
25. K. D. Egeberg, B.A. Springer, S.G. Sligar, T.E. Carver, R.J. Rohlfs, and J. S. Olson, "The role of Val68(E11) in ligand binding to sperm whale myoglobin. Site-directed mutagenesis of a synthetic gene," J. Biol. Chem. 265, 11788-11795 (1990).
26. G. N. Phillips, R.M. Arduini, B.A. Springer, and S. G. Sligar, "Crystal structure of myoglobin from a synthetic gene," Proteins: Struct., Funct., Genet. 7, 358-365 (1990).
27. A. Zarrine-Afsar, C. Müller, F.O. Talbot, and R. J. D. Miller, "Self-localizing stabilized mega-pixel picoliter arrays with size-exclusion sorting capabilities," Anal. Chem. 83, 767-773 (2011).
28. M. Harmand, R. Coffee, M.R. Bionta, M. Chollet, D. French et al., "Achieving few-femtosecond time-sorting at hard x-ray free-electron lasers," Nat. Photonics 7, 215-218 (2013).
29. G. Winter, "Xia2: An expert system for macromolecular crystallography data reduction," J. Appl. Crystallogr. 43, 186-190 (2010).
30. M. D. Winn, C.C. Ballard, K.D. Cowtan, E.J. Dodson, P. Emsley et al., "Overview of the CCP4 suite and current developments," Acta Crystallogr., Sect. D: Biol. Crystallogr. 67, 235-242 (2011).
31. W. Kabsch, "XDS," Acta Crystallogr., Sect. D: Biol. Crystallogr. 66, 125-132 (2010).
32. P. Evans, "Scaling and assessment of data quality," Acta Crystallogr., Sect. D: Biol. Crystallogr. 62, 72-82 (2006).
33. R Core Team, "R: A language and environment for statistical computing," R Foundation for Statistical Computing, Vienna, Austria 2014, see http://www. R-project.org/.
34. P. Roedig et al., Sci. Rep. 5, 10451 (2015).