-
1
-
-
0035582244
-
An automated multidimensional protein identification technology for shotgun proteomics
-
Wolters DA, Washburn MP, Yates JR: An automated multidimensional protein identification technology for shotgun proteomics. Anal Chem 2001; 73: 23-5683.
-
(2001)
Anal Chem
, vol.73
, pp. 23-5683
-
-
Wolters, D.A.1
Washburn, M.P.2
Yates, J.R.3
-
3
-
-
0035350894
-
Mass spectrometry allows direct identification of proteins in large genomes
-
Küster B, Mortensen P, Andersen JS, Mann M: Mass spectrometry allows direct identification of proteins in large genomes. Proteomics 2001; 1: 5-641.
-
(2001)
Proteomics
, vol.1
, pp. 5-641
-
-
Küster, B.1
Mortensen, P.2
Andersen, J.S.3
Mann, M.4
-
4
-
-
33745054329
-
Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics
-
Fermin D, Allen BB, Blackwell TW, Menon R, Adamski M, Xu Y, Ulintz P, Omenn GS, States DJ: Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics. Genome Biol 2006, 7(4):R35.
-
(2006)
Genome Biol
, vol.7
, Issue.4
, pp. R35
-
-
Fermin, D.1
Allen, B.B.2
Blackwell, T.W.3
Menon, R.4
Adamski, M.5
Xu, Y.6
Ulintz, P.7
Omenn, G.S.8
States, D.J.9
-
5
-
-
77749282896
-
An integrated massspectrometry pipeline identifies novel protein coding-regions in the human genome
-
Bitton DA, Smith DL, Connolly Y, Scutt PJ, Miller CJ: An integrated massspectrometry pipeline identifies novel protein coding-regions in the human genome. PLoS One 2010, 5(1):e8949.
-
(2010)
PLoS One
, vol.5
, Issue.1
, pp. e8949
-
-
Bitton, D.A.1
Smith, D.L.2
Connolly, Y.3
Scutt, P.J.4
Miller, C.J.5
-
7
-
-
84939533392
-
PGP: parallel prokaryotic proteogenomics pipeline for MPI clusters, high-throughput batch clusters and multicore workstations
-
Tovchigrechko A, Venepally P, Payne SH: PGP: parallel prokaryotic proteogenomics pipeline for MPI clusters, high-throughput batch clusters and multicore workstations. Bioinformatics 2014; 30: 10-1469.
-
(2014)
Bioinformatics
, vol.30
, pp. 10-1469
-
-
Tovchigrechko, A.1
Venepally, P.2
Payne, S.H.3
-
8
-
-
84886054819
-
Proteogenomic analysis of Bradyrhizobium japonicum USDA110 using GenoSuite, an automated multi-algorithmic pipeline
-
Kumar D, Yadav AK, Kadimi PK, Nagaraj SH, Grimmond SM, Dash D:Proteogenomic analysis of Bradyrhizobium japonicum USDA110 using GenoSuite, an automated multi-algorithmic pipeline. Mol Cell Proteomics 2013, 12(11):3388-3397.
-
(2013)
Mol Cell Proteomics
, vol.12
, Issue.11
, pp. 3388-3397
-
-
Kumar, D.1
Yadav, A.K.2
Kadimi, P.K.3
Nagaraj, S.H.4
Grimmond, S.M.5
Dash, D.6
-
9
-
-
84901849815
-
jmzTab: A Java interface to the mzTab data standard
-
Xu QW, Griss J, Wang R, Jones AR, Hermjakob H, Vizcaíno JA: jmzTab: A Java interface to the mzTab data standard. Proteomics 2014.
-
(2014)
Proteomics
-
-
Xu, Q.W.1
Griss, J.2
Wang, R.3
Jones, A.R.4
Hermjakob, H.5
Vizcaíno, J.A.6
-
10
-
-
33847630405
-
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
-
Elias JE, Gygi SP: Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat Methods 2007; 4: 3-207.
-
(2007)
Nat Methods
, vol.4
, pp. 3-207
-
-
Elias, J.E.1
Gygi, S.P.2
-
11
-
-
38649083118
-
Assigning significance to peptides identified by tandem mass spectrometry using decoy databases
-
Käll L, Storey JD, MacCoss MJ, Noble WS: Assigning significance to peptides identified by tandem mass spectrometry using decoy databases. J Proteome Res 2008; 7: 1-29.
-
(2008)
J Proteome Res
, vol.7
, pp. 1-29
-
-
Käll, L.1
Storey, J.D.2
MacCoss, M.J.3
Noble, W.S.4
-
12
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
-
Eng J, McCormack A, Yates J: An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. Journal of the American Society for Mass Spectrometry 1994; 5: 11-976.
-
(1994)
Journal of the American Society for Mass Spectrometry
, vol.5
, pp. 11-976
-
-
Eng, J.1
McCormack, A.2
Yates, J.3
-
13
-
-
50149117169
-
Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy databases
-
Kim S, Gupta N, Pevzner PA: Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy databases. J Proteome Res 2008; 7: 8-3354.
-
(2008)
J Proteome Res
, vol.7
, pp. 8-3354
-
-
Kim, S.1
Gupta, N.2
Pevzner, P.A.3
-
14
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins DN, Pappin DJ, Creasy DM, Cottrell JS: Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 1999; 20: 18-3551.
-
(1999)
Electrophoresis
, vol.20
, pp. 18-3551
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.4
-
15
-
-
3142702204
-
TANDEM: matching proteins with tandem mass spectra
-
Craig R, Beavis RC: TANDEM: matching proteins with tandem mass spectra. Bioinformatics 2004; 20: 9-1466.
-
(2004)
Bioinformatics
, vol.20
, pp. 9-1466
-
-
Craig, R.1
Beavis, R.C.2
-
16
-
-
42249108173
-
OpenMS - an open-source software framework for mass spectrometry
-
Sturm M, Bertsch A, Gröpl C, Hildebrandt A, Hussong R, Lange E, Pfeifer N, Schulz-Trieglaff O, Zerck A, Reinert K, et al: OpenMS - an open-source software framework for mass spectrometry. BMC Bioinformatics 2008, 9:163.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 163
-
-
Sturm, M.1
Bertsch, A.2
Gröpl, C.3
Hildebrandt, A.4
Hussong, R.5
Lange, E.6
Pfeifer, N.7
Schulz-Trieglaff, O.8
Zerck, A.9
Reinert, K.10
-
17
-
-
77952691277
-
Rhizobial adaptation to hosts, a new facet in the legume root-nodule symbiosis
-
Koch M, Delmotte N, Rehrauer H, Vorholt JA, Pessi G, Hennecke H:Rhizobial adaptation to hosts, a new facet in the legume root-nodule symbiosis. Mol Plant Microbe Interact 2010, 23(6):784-790.
-
(2010)
Mol Plant Microbe Interact
, vol.23
, Issue.6
, pp. 784-790
-
-
Koch, M.1
Delmotte, N.2
Rehrauer, H.3
Vorholt, J.A.4
Pessi, G.5
Hennecke, H.6
-
18
-
-
63049120021
-
Improving sensitivity in proteome studies by analysis of false discovery rates for multiple search engines
-
Jones AR, Siepen JA, Hubbard SJ, Paton NW: Improving sensitivity in proteome studies by analysis of false discovery rates for multiple search engines. Proteomics 2009; 9: 5, 1220-1229.
-
(2009)
Proteomics
, vol.9
, Issue.5
, pp. 1220-1229
-
-
Jones, A.R.1
Siepen, J.A.2
Hubbard, S.J.3
Paton, N.W.4
|