Brain maps online: Toward open access atlases and a pan-mammalian nomenclature

Journal of Comparative Neurology

Volumn 523, Issue 15, 2015, Pages 2272-2276

  Swanson, Larry W ^a  

^a UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BRAIN MAPPING; BRAIN REGION; CENTRAL NERVOUS SYSTEM; FUNCTIONAL ANATOMY; HUMAN; INFORMATION PROCESSING; MEDICAL ILLUSTRATION; MEDICAL LITERATURE; MEDICAL SOCIETY; NEUROSCIENCE; NOMENCLATURE; NONHUMAN; NOTE; ONLINE SYSTEM; PRIORITY JOURNAL; PUBLISHING; TAXONOMY; ACCESS TO INFORMATION; ANATOMY AND HISTOLOGY; ANIMAL; BRAIN; MOUSE; OPEN ACCESS PUBLISHING; RAT;

ACCESS TO INFORMATION; ANIMALS; BRAIN; BRAIN MAPPING; HUMANS; MICE; OPEN ACCESS PUBLISHING; PUBLISHING; RATS; TERMINOLOGY AS TOPIC;

EID: 84939269459     PISSN: 00219967     EISSN: 10969861     Source Type: Journal    
DOI: 10.1002/cne.23788     Document Type: Note

References (26)

1. Allen P. 2004. Allen brain atlas. Seattle, WA: Allen Institute for Brain Science. Available from: http://www.brain-map.org/.
2. Alvarez-Bolado G, Swanson LW. 1996. Developmental brain maps: structure of the embryonic rat brain. Amsterdam: Elsevier.
3. Bota M, Swanson LW. 2008. 1st INCF Workshop on Neuroanatomical Nomenclature and Taxonomy. Nature Precedings. Available from: http://dx.doi.org/10.1038/npre.2008.1780.1.
4. Bota M, Swanson LW. 2010. Collating and curating neuroanatomical nomenclatures: principles and use of the Brain Architecture Knowledge Management System (BAMS). Front Neuroinf 4:1-16.
5. Bota M, Dong H-W, Swanson LW. 2003. From gene networks to brain networks. Nat Neurosci 6:795-799.
6. Bota M, Dong H-W, Swanson LW. 2012. Combining collation and annotation efforts toward completion of the rat and mouse connectomes in BAMS. Front Neuroinf 6:1-10.
7. Bota M, Talpalaru S, Hintiryan H, Dong H-W, Swanson LW. 2014. BAMS2 Workspace: a comprehensive and versatile neuroinformatic platform for collating and processing neuroanatomical connections. J Comp Neurol 522:3160-3176.
8. Bota M, Sporns O, Swanson LW. 2015. Architecture of the cerebral cortical association connectome underlying cognition. Proc Natl Acad Sci U S A, in press. DOI: 10.1073/pnas.1504394112.
9. Burns GAPC, Cheng W-C, Thompson RH, Swanson LW. 2006. The NeuARt II system: a viewing tool for neuroanatomical data based on published neuroanatomical atlases. BMC Bioinformatics 7:531.
10. Dashti AE, Ghandeharizadeh S, Stone J, Swanson LW, Thompson RH. 1997. Database challenges and solutions in neuroscientific applications. Neuroimage 5:97-115.
11. Dashti A, Burns GAPC, Ghandeharizadeh S, Jia S, Shahabi C, Simmons DM, Stone J, Swanson LW. 2001. The 'neuroanatomical rat brain viewer' ('NeuARt'): a system for registering data against brain atlases. In: Arbib MA, Grethe JG, editors. Computing the brain: a guide to neuroinformatics. San Diego, CA: Academic Press. p 189-202.
12. Dong HW. 2007. A digital color brain atlas of the C57Black/6J male mouse. Hoboken, NJ: John Wiley & Sons. With a CD-ROM.
13. Hof PR, Young WG, Bloom FE, Belichenko PV, Celio MR. 2000. Comparative cytoarchitectonic atlas of the C57BL/6 and 129/Sv mouse brains. Amsterdam: Elsevier. With CD-ROMS and Atlas Navigator software.
14. International Commission on Zoological Nomenclature. 1999. International code of zoological nomenclature. London: International Trust for Zoological Nomenclature.
15. Lein ES, Hawrylycz MJ, Ao N, Ayres M, Bensinger A, Bernard A, Boe AF, Boguski MS, Brockway KS, Byrnes EJ, Chen L, Chen L, Chen TM, Chin MC, Chong J, Crook BE, Czaplinska A, Dang CN, Datta S, Dee NR, Desaki AL, Desta T, Diep E, Dolbeare TA, Donelan MJ, Dong HW, Dougherty JG, Duncan BJ, Ebbert AJ, Eichele G, Estin LK, Faber C, Facer BA, Fields R, Fischer SR, Fliss TP, Frensley C, Gates SN, Glattfelder KJ, Halverson KR, Hart MR, Hohmann JG, Howell MP, Jeung DP, Johnson RA, Karr PT, Kawal R, Kidney JM, Knapik RH, Kuan CL, Lake JH, Laramee AR, Larsen KD, Lau C, Lemon TA, Liang AJ, Liu Y, Luong LT, Michaels J, Morgan JJ, Morgan RJ, Mortrud MT, Mosqueda NF, Ng LL, Ng R, Orta GJ, Overly CC, Pak TH, Parry SE, Pathak SD, Pearson OC, Puchalski RB, Riley ZL, Rockett HR, Rowland SA, Royall JJ, Ruiz MJ, Sarno NR, Schaffnit K, Shapovalova NV, Sivisay T, Slaughterbeck CR, Smith SC, Smith KA, Smith BI, Sodt AJ, Stewart NN, Stumpf KR, Sunkin SM, Sutram M, Tam A, Teemer CD, Thaller C, Thompson CL, Varnam LR, Visel A, Whitlock RM, Wohnoutka PE, Wolkey CK, Wong VY, Wood M, Yaylaoglu MB, Young RC, Youngstrom BL, Yuan XF, Zhang B, Zwingman TA, Jones AR. 2007. Genome-wide atlas of gene expression in the adult mouse brain. Nature 445:168-176.
16. Linnaeus C. 1758. Systema natura. Holmiae: Laurentii Salvii.
17. Oh SW, Harris JA, Ng L, Winslow B, Cain N, Mihalas S, Wang Q, Lau C, Kuan L, Henry AM, Mortrud MT, Ouellette B, Nguyen TN, Sorensen SA, Slaughterbeck CR, Wakeman W, Li Y, Feng D, Ho A, Nicholas E, Hirokawa KE, Bohn P, Joines KM, Peng H, Hawrylycz MJ, Phillips JW, Hohmann JG, Wohnoutka P, Gerfen CR, Koch C, Bernard A, Dang C, Jones AR, Zeng H. 2014. A mesoscale connectome of the mouse brain. Nature 508:207-201.
18. Robinson AH, Petchenik BB. 1976. The nature of maps. Essays toward understanding maps and mapping. Chicago: University of Chicago Press.
19. Šimić G, Hoff PR. 2015. In search of the definitive Brodmann's map of cortical areas in human. J Comp Neurol 523:4-15.
20. Swanson LW. 1992. Brain maps: structure of the rat brain. Amsterdam: Elsevier.
21. Swanson LW. 1993. Brain maps: computer graphics files, professional version 1.0. Amsterdam: Elsevier. With four floppy discs.
22. Swanson LW. 1998. Brain maps: structure of the rat brain. A laboratory guide with printed and electronic templates for data, models and schematics, 2nd ed. Amsterdam: Elsevier. With double CD-ROM, computer graphics files 2.0.
23. Swanson LW. 2004. Brain maps: structure of the rat brain. A laboratory guide with printed and electronic templates for data, models and schematics, 3rd ed. Amsterdam: Elsevier. With CD-ROM, computer graphics files 3.0.
24. Swanson LW. 2014. Neuroanatomical terminology: a lexicon of classical origins and historical foundations. New York: Oxford University Press.
25. Swanson LW, Bota M. 2010. Foundational model of nervous system structural connectivity with a schema for wiring diagrams, connectome, and basic plan architecture. Proc Nat Acad Sci USA 107:20610-20617.
26. Zingg B, Hintiryan H, Gou L, Song MY, Bay M, Bienkowski MS, Foster NN, Yamashita S, Bowman I, Toga AW, Dong HW. 2014. Neural networks of the mouse neocortex. Cell 156:1096-1111.