-
1
-
-
79958863696
-
Enhancements to the ADMIXTURE algorithm for individual ancestry estimation
-
Alexander DH, Lange K (2011) Enhancements to the ADMIXTURE algorithm for individual ancestry estimation. BMC Bioinformatics, 12, 246.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 246
-
-
Alexander, D.H.1
Lange, K.2
-
2
-
-
69749099417
-
Fast model-based estimation of ancestry in unrelated individuals
-
Alexander DH, Novembre J, Lange K (2009) Fast model-based estimation of ancestry in unrelated individuals. Genome Research, 19, 1655-1664.
-
(2009)
Genome Research
, vol.19
, pp. 1655-1664
-
-
Alexander, D.H.1
Novembre, J.2
Lange, K.3
-
3
-
-
33644781694
-
Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars
-
Breseghello F, Sorrells ME (2006) Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars. Genetics, 172, 1165-1177.
-
(2006)
Genetics
, vol.172
, pp. 1165-1177
-
-
Breseghello, F.1
Sorrells, M.E.2
-
4
-
-
34547883224
-
Bayesian clustering algorithms ascertaining spatial population structure: a new computer program and a comparison study
-
Chen C, Durand E, Forbes F, François O (2007) Bayesian clustering algorithms ascertaining spatial population structure: a new computer program and a comparison study. Molecular Ecology Notes, 7, 747-756.
-
(2007)
Molecular Ecology Notes
, vol.7
, pp. 747-756
-
-
Chen, C.1
Durand, E.2
Forbes, F.3
François, O.4
-
5
-
-
0037274702
-
Bayesian analysis of genetic differentiation between populations
-
Corander J, Waldmann P, Sillanpaa MJ (2003) Bayesian analysis of genetic differentiation between populations. Genetics, 163, 367-374.
-
(2003)
Genetics
, vol.163
, pp. 367-374
-
-
Corander, J.1
Waldmann, P.2
Sillanpaa, M.J.3
-
6
-
-
7244224987
-
BAPS 2: enhanced possibilities for the analysis of genetic population structure
-
Corander J, Waldmann P, Marttinen P, Sillanpaa MJ (2004) BAPS 2: enhanced possibilities for the analysis of genetic population structure. Bioinformatics, 20, 2363-2369.
-
(2004)
Bioinformatics
, vol.20
, pp. 2363-2369
-
-
Corander, J.1
Waldmann, P.2
Marttinen, P.3
Sillanpaa, M.J.4
-
7
-
-
62349132559
-
Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations
-
Corander J, Marttinen P, Siren J, Tang J (2008a) Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations. BMC Bioinformatics, 9, 539.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 539
-
-
Corander, J.1
Marttinen, P.2
Siren, J.3
Tang, J.4
-
8
-
-
38149124743
-
Bayesian spatial modeling of genetic population structure
-
Corander J, Siren J, Arjas E (2008b) Bayesian spatial modeling of genetic population structure. Computational Statistics, 23, 111-129.
-
(2008)
Computational Statistics
, vol.23
, pp. 111-129
-
-
Corander, J.1
Siren, J.2
Arjas, E.3
-
9
-
-
0034879445
-
A Bayesian approach to the identification of panmictic populations and the assignment of individuals
-
Dawson KJ, Belkhir K (2001) A Bayesian approach to the identification of panmictic populations and the assignment of individuals. Genetical Research, 78, 59-77.
-
(2001)
Genetical Research
, vol.78
, pp. 59-77
-
-
Dawson, K.J.1
Belkhir, K.2
-
10
-
-
34547566897
-
The Near Eastern origin of cat domestication
-
Driscoll CA, Menotti-Raymond M, Roca AL et al. (2007) The Near Eastern origin of cat domestication. Science, 317, 519-523.
-
(2007)
Science
, vol.317
, pp. 519-523
-
-
Driscoll, C.A.1
Menotti-Raymond, M.2
Roca, A.L.3
-
11
-
-
67649879347
-
Spatial inference of admixture proportions and secondary contact zones
-
Durand E, Jay F, Gaggiotti OE, François O (2009) Spatial inference of admixture proportions and secondary contact zones. Molecular Biology and Evolution, 26, 1963-1973.
-
(2009)
Molecular Biology and Evolution
, vol.26
, pp. 1963-1973
-
-
Durand, E.1
Jay, F.2
Gaggiotti, O.E.3
François, O.4
-
12
-
-
84882759440
-
Structure Harvester: a website and program for visualizing Structure output and implementing the Evanno method
-
Earl DA, Vonholdt BM (2012) Structure Harvester: a website and program for visualizing Structure output and implementing the Evanno method. Conservation Genetics Resources, 4, 359-361.
-
(2012)
Conservation Genetics Resources
, vol.4
, pp. 359-361
-
-
Earl, D.A.1
Vonholdt, B.M.2
-
13
-
-
0036529479
-
An efficient algorithm for large-scale detection of protein families
-
Enright AJ, Van Dongen S, Ouzounis CA (2002) An efficient algorithm for large-scale detection of protein families. Nucleic Acids Research, 30, 1575-1584.
-
(2002)
Nucleic Acids Research
, vol.30
, pp. 1575-1584
-
-
Enright, A.J.1
Van Dongen, S.2
Ouzounis, C.A.3
-
14
-
-
21244479740
-
Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study
-
Evanno G, Regnaut S, Gould J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology, 14, 2611-2620.
-
(2005)
Molecular Ecology
, vol.14
, pp. 2611-2620
-
-
Evanno, G.1
Regnaut, S.2
Gould, J.3
-
15
-
-
0041817568
-
Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies
-
Falush D, Stephens M, Pritchard JK (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics, 164, 1567-1587.
-
(2003)
Genetics
, vol.164
, pp. 1567-1587
-
-
Falush, D.1
Stephens, M.2
Pritchard, J.K.3
-
16
-
-
34447120219
-
Inference of population structure using multilocus genotype data: dominant markers and null alleles
-
Falush D, Stephens M, Pritchard JK (2007) Inference of population structure using multilocus genotype data: dominant markers and null alleles. Molecular Ecology Notes, 7, 574-578.
-
(2007)
Molecular Ecology Notes
, vol.7
, pp. 574-578
-
-
Falush, D.1
Stephens, M.2
Pritchard, J.K.3
-
18
-
-
33750472670
-
Bayesian clustering using hidden Markov random fields in spatial population genetics
-
François O, Ancelet S, Guillot G (2006) Bayesian clustering using hidden Markov random fields in spatial population genetics. Genetics, 174, 805-816.
-
(2006)
Genetics
, vol.174
, pp. 805-816
-
-
François, O.1
Ancelet, S.2
Guillot, G.3
-
19
-
-
84901292350
-
Fast and efficient estimation of individual ancestry coefficients
-
Frichot E, Mathieu F, Trouillon T, Bouchard G, François O (2014) Fast and efficient estimation of individual ancestry coefficients. Genetics, 196, 973-983.
-
(2014)
Genetics
, vol.196
, pp. 973-983
-
-
Frichot, E.1
Mathieu, F.2
Trouillon, T.3
Bouchard, G.4
François, O.5
-
20
-
-
34547110840
-
A Markov chain Monte Carlo approach for joint inference of population structure and inbreeding rates from multilocus genotype data
-
Gao H, Williamson S, Bustamante CD (2007) A Markov chain Monte Carlo approach for joint inference of population structure and inbreeding rates from multilocus genotype data. Genetics, 176, 1635-1651.
-
(2007)
Genetics
, vol.176
, pp. 1635-1651
-
-
Gao, H.1
Williamson, S.2
Bustamante, C.D.3
-
21
-
-
84867575603
-
Recommendations for utilizing and reporting population genetic analyses: the reproducibility of genetic clustering using the program STRUCTURE
-
Gilbert KJ, Andrew RL, Bock DG et al. (2012) Recommendations for utilizing and reporting population genetic analyses: the reproducibility of genetic clustering using the program STRUCTURE. Molecular Ecology, 21, 4925-4930.
-
(2012)
Molecular Ecology
, vol.21
, pp. 4925-4930
-
-
Gilbert, K.J.1
Andrew, R.L.2
Bock, D.G.3
-
22
-
-
84886086289
-
Analyses of genetic ancestry enable key insights for molecular ecology
-
Gompert Z, Buerkle CA (2013) Analyses of genetic ancestry enable key insights for molecular ecology. Molecular Ecology, 22, 5278-5294.
-
(2013)
Molecular Ecology
, vol.22
, pp. 5278-5294
-
-
Gompert, Z.1
Buerkle, C.A.2
-
23
-
-
52949124869
-
Inference of structure in subdivided populations at low levels of genetic differentiation-the correlated allele frequencies model revisited
-
Guillot G (2008) Inference of structure in subdivided populations at low levels of genetic differentiation-the correlated allele frequencies model revisited. Bioinformatics, 24, 2222-2228.
-
(2008)
Bioinformatics
, vol.24
, pp. 2222-2228
-
-
Guillot, G.1
-
24
-
-
23344443817
-
A spatial statistical model for landscape genetics
-
Guillot G, Estoup A, Mortier F, Cosson JF (2005) A spatial statistical model for landscape genetics. Genetics, 170, 1261-1280.
-
(2005)
Genetics
, vol.170
, pp. 1261-1280
-
-
Guillot, G.1
Estoup, A.2
Mortier, F.3
Cosson, J.F.4
-
27
-
-
68949103876
-
Inferring weak population structure with the assistance of sample group information
-
Hubisz MJ, Falush D, Stephens M, Pritchard JK (2009) Inferring weak population structure with the assistance of sample group information. Molecular Ecology Resources, 9, 1322-1332.
-
(2009)
Molecular Ecology Resources
, vol.9
, pp. 1322-1332
-
-
Hubisz, M.J.1
Falush, D.2
Stephens, M.3
Pritchard, J.K.4
-
28
-
-
34249066206
-
Inference of population structure under a Dirichlet process model
-
Huelsenbeck JP, Andolfatto P (2007) Inference of population structure under a Dirichlet process model. Genetics, 175, 1787-1802.
-
(2007)
Genetics
, vol.175
, pp. 1787-1802
-
-
Huelsenbeck, J.P.1
Andolfatto, P.2
-
31
-
-
34547861256
-
CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
-
Jakobsson M, Rosenberg NA (2007) CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics, 23, 1801-1806.
-
(2007)
Bioinformatics
, vol.23
, pp. 1801-1806
-
-
Jakobsson, M.1
Rosenberg, N.A.2
-
32
-
-
39749197456
-
Genotype, haplotype and copy-number variation in worldwide human populations
-
Jakobsson M, Scholz SW, Scheet P, et al. (2008) Genotype, haplotype and copy-number variation in worldwide human populations. Nature, 451, 998-1003.
-
(2008)
Nature
, vol.451
, pp. 998-1003
-
-
Jakobsson, M.1
Scholz, S.W.2
Scheet, P.3
-
34
-
-
73249132603
-
Genomic microsatellites identify shared Jewish ancestry intermediate between Middle Eastern and European populations
-
Kopelman NM, Stone L, Wang C et al. (2009) Genomic microsatellites identify shared Jewish ancestry intermediate between Middle Eastern and European populations. BMC Genetics, 10, 80.
-
(2009)
BMC Genetics
, vol.10
, pp. 80
-
-
Kopelman, N.M.1
Stone, L.2
Wang, C.3
-
35
-
-
13844320121
-
Assignment methods: matching biological questions with appropriate techniques
-
Manel S, Gaggiotti OE, Waples RS (2005) Assignment methods: matching biological questions with appropriate techniques. Trends in Ecology & Evolution, 20, 136-142.
-
(2005)
Trends in Ecology & Evolution
, vol.20
, pp. 136-142
-
-
Manel, S.1
Gaggiotti, O.E.2
Waples, R.S.3
-
36
-
-
2442653898
-
Genetic structure of the purebred domestic dog
-
Parker HG, Kim LV, Sutter NB et al. (2004) Genetic structure of the purebred domestic dog. Science, 304, 1160-1164.
-
(2004)
Science
, vol.304
, pp. 1160-1164
-
-
Parker, H.G.1
Kim, L.V.2
Sutter, N.B.3
-
37
-
-
33646837193
-
The Gibbs and split-merge sampler for population mixture analysis from genetic data with incomplete baselines
-
Pella J, Masuda M (2006) The Gibbs and split-merge sampler for population mixture analysis from genetic data with incomplete baselines. Canadian Journal of Fisheries and Aquatic Sciences, 63, 576-596.
-
(2006)
Canadian Journal of Fisheries and Aquatic Sciences
, vol.63
, pp. 576-596
-
-
Pella, J.1
Masuda, M.2
-
38
-
-
0035528928
-
Case-control studies of association in structured or admixed populations
-
Pritchard JK, Donnelly P (2001) Case-control studies of association in structured or admixed populations. Theoretical Population Biology, 60, 227-237.
-
(2001)
Theoretical Population Biology
, vol.60
, pp. 227-237
-
-
Pritchard, J.K.1
Donnelly, P.2
-
39
-
-
0034118493
-
Inference of population structure using multilocus genotype data
-
Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945-959.
-
(2000)
Genetics
, vol.155
, pp. 945-959
-
-
Pritchard, J.K.1
Stephens, M.2
Donnelly, P.3
-
40
-
-
84879961088
-
A DNA-based registry for all animal species: the Barcode index number (BIN) system
-
Ratnasingham S, Hebert PD (2013) A DNA-based registry for all animal species: the Barcode index number (BIN) system. PLoS ONE, 8, e66213.
-
(2013)
PLoS ONE
, vol.8
, pp. e66213
-
-
Ratnasingham, S.1
Hebert, P.D.2
-
41
-
-
1342331102
-
DISTRUCT: a program for the graphical display of population structure
-
Rosenberg NA (2004) DISTRUCT: a program for the graphical display of population structure. Molecular Ecology Notes, 4, 137-138.
-
(2004)
Molecular Ecology Notes
, vol.4
, pp. 137-138
-
-
Rosenberg, N.A.1
-
42
-
-
0034759330
-
Empirical evaluation of genetic clustering methods using multilocus genotypes from 20 chicken breeds
-
Rosenberg NA, Burke T, Elo K et al. (2001a) Empirical evaluation of genetic clustering methods using multilocus genotypes from 20 chicken breeds. Genetics, 159, 699-713.
-
(2001)
Genetics
, vol.159
, pp. 699-713
-
-
Rosenberg, N.A.1
Burke, T.2
Elo, K.3
-
45
-
-
68949216310
-
mStruct: inference of population structure in light of both genetic admixing and allele mutations
-
Shringarpure S, Xing EP (2009) mStruct: inference of population structure in light of both genetic admixing and allele mutations. Genetics, 182, 575-593.
-
(2009)
Genetics
, vol.182
, pp. 575-593
-
-
Shringarpure, S.1
Xing, E.P.2
-
46
-
-
17644402806
-
Estimation of individual admixture: analytical and study design considerations
-
Tang H, Peng J, Wang P, Risch NJ (2005) Estimation of individual admixture: analytical and study design considerations. Genetic Epidemiology, 28, 289-301.
-
(2005)
Genetic Epidemiology
, vol.28
, pp. 289-301
-
-
Tang, H.1
Peng, J.2
Wang, P.3
Risch, N.J.4
-
47
-
-
0034931677
-
Dwarf8 polymorphisms associate with variation in flowering time
-
Thornsberry JM, Goodman MM, Doebley J et al. (2001) Dwarf8 polymorphisms associate with variation in flowering time. Nature Genetics, 28, 286-289.
-
(2001)
Nature Genetics
, vol.28
, pp. 286-289
-
-
Thornsberry, J.M.1
Goodman, M.M.2
Doebley, J.3
-
50
-
-
37349025758
-
Genetic variation and population structure in Native Americans
-
Wang S, Lewis CM, Jakobsson M et al. (2007) Genetic variation and population structure in Native Americans. PLoS Genetics, 3, e185.
-
(2007)
PLoS Genetics
, vol.3
, pp. e185
-
-
Wang, S.1
Lewis, C.M.2
Jakobsson, M.3
-
51
-
-
66049096557
-
Non-Darwinian estimation: my ancestors, my genes' ancestors
-
Weiss KM, Long JC (2009) Non-Darwinian estimation: my ancestors, my genes' ancestors. Genome Research, 19, 703-710.
-
(2009)
Genome Research
, vol.19
, pp. 703-710
-
-
Weiss, K.M.1
Long, J.C.2
-
52
-
-
33750481891
-
Thrice out of Africa: ancient and recent expansions of the honey bee, Apis mellifera
-
Whitfield CW, Behura SK, Berlocher SH et al. (2006) Thrice out of Africa: ancient and recent expansions of the honey bee, Apis mellifera. Science, 314, 642-645.
-
(2006)
Science
, vol.314
, pp. 642-645
-
-
Whitfield, C.W.1
Behura, S.K.2
Berlocher, S.H.3
-
53
-
-
84871986062
-
Whole-genome sequencing of giant pandas provides insights into demographic history and local adaptation
-
Zhao S, Zheng P, Dong S et al. (2013) Whole-genome sequencing of giant pandas provides insights into demographic history and local adaptation. Nature Genetics, 45, 67-71.
-
(2013)
Nature Genetics
, vol.45
, pp. 67-71
-
-
Zhao, S.1
Zheng, P.2
Dong, S.3
|